Wall clock time and date at job start Tue Mar 31 2020 23:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.58723 * 2 1 4 4 C 1.53191 * 109.70031 * 120.35689 * 2 1 3 5 5 C 1.53050 * 109.30739 * 174.49002 * 4 2 1 6 6 C 1.53036 * 109.53676 * 298.63419 * 5 4 2 7 7 H 1.09006 * 109.51992 * 181.33098 * 6 5 4 8 8 N 1.46496 * 109.49871 * 301.41344 * 6 5 4 9 9 C 1.34779 * 119.99836 * 204.84231 * 8 6 5 10 10 O 1.21589 * 120.00234 * 359.97438 * 9 8 6 11 11 C 1.47531 * 119.99757 * 179.97438 * 9 8 6 12 12 C 1.36597 * 125.76945 * 179.97438 * 11 9 8 13 13 N 1.34807 * 106.83812 * 180.02562 * 12 11 9 14 14 C 1.46504 * 126.59248 * 179.97438 * 13 12 11 15 15 C 1.52995 * 109.47380 * 74.99811 * 14 13 12 16 16 C 1.53003 * 109.46964 * 314.99831 * 14 13 12 17 17 C 1.53005 * 109.47017 * 195.00021 * 14 13 12 18 18 N 1.40213 * 106.81239 * 0.22835 * 13 12 11 19 19 N 1.28756 * 108.36387 * 359.61273 * 18 13 12 20 20 C 1.53193 * 109.31570 * 61.36795 * 6 5 4 21 21 N 1.46924 * 109.58444 * 239.71677 * 2 1 3 22 22 C 1.36939 * 120.63381 * 6.44274 * 21 2 1 23 23 H 1.08004 * 119.99589 * 330.18177 * 22 21 2 24 24 C 1.38809 * 120.00609 * 150.18617 * 22 21 2 25 25 N 1.31624 * 119.99263 * 344.49418 * 24 22 21 26 26 Si 1.86795 * 120.00393 * 164.49546 * 24 22 21 27 27 H 1.48500 * 109.46922 * 60.00174 * 26 24 22 28 28 H 1.48501 * 109.47304 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.47075 * 300.00253 * 26 24 22 30 30 H 1.08995 * 109.47181 * 180.28109 * 1 2 3 31 31 H 1.08997 * 109.47037 * 300.28525 * 1 2 3 32 32 H 1.09004 * 109.47086 * 60.28034 * 1 2 3 33 33 H 1.08994 * 109.49663 * 294.44106 * 4 2 1 34 34 H 1.08998 * 109.50181 * 54.54412 * 4 2 1 35 35 H 1.09000 * 109.45540 * 178.61594 * 5 4 2 36 36 H 1.08999 * 109.46017 * 58.65798 * 5 4 2 37 37 H 0.97005 * 120.00210 * 24.84146 * 8 6 5 38 38 H 1.08002 * 126.57840 * 0.04435 * 12 11 9 39 39 H 1.09002 * 109.47142 * 59.99935 * 15 14 13 40 40 H 1.09000 * 109.47400 * 300.00400 * 15 14 13 41 41 H 1.08993 * 109.47331 * 179.97438 * 15 14 13 42 42 H 1.08997 * 109.47125 * 180.02562 * 16 14 13 43 43 H 1.09003 * 109.47049 * 299.99871 * 16 14 13 44 44 H 1.08991 * 109.46905 * 60.00424 * 16 14 13 45 45 H 1.09002 * 109.46940 * 299.99719 * 17 14 13 46 46 H 1.09001 * 109.47003 * 59.99609 * 17 14 13 47 47 H 1.08997 * 109.47116 * 179.97438 * 17 14 13 48 48 H 1.09001 * 109.58414 * 65.14953 * 20 6 5 49 49 H 1.08991 * 109.58893 * 185.43343 * 20 6 5 50 50 H 0.97001 * 119.99293 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0465 -0.7289 1.2445 5 6 3.5707 -0.8444 1.1673 6 6 3.9601 -1.6608 -0.0671 7 1 5.0446 -1.7630 -0.1089 8 7 3.3465 -2.9888 0.0113 9 6 3.9026 -4.0277 -0.6428 10 8 4.9133 -3.8628 -1.2984 11 6 3.2850 -5.3652 -0.5633 12 6 3.7463 -6.4954 -1.1762 13 7 2.8982 -7.4909 -0.8491 14 6 2.9875 -8.8897 -1.2755 15 6 4.1029 -9.5900 -0.4970 16 6 3.2966 -8.9477 -2.7729 17 6 1.6560 -9.5922 -1.0020 18 7 1.9109 -6.9289 -0.0272 19 7 2.1730 -5.6774 0.1239 20 6 3.4654 -0.9425 -1.3265 21 7 2.0225 -0.6980 -1.1954 22 6 1.1533 -1.1133 -2.1686 23 1 0.1402 -1.3826 -1.9087 24 6 1.5742 -1.1882 -3.4893 25 7 2.6832 -0.5849 -3.8616 26 14 0.5669 -2.1450 -4.7378 27 1 -0.7950 -1.5598 -4.8280 28 1 1.2258 -2.0712 -6.0666 29 1 0.4686 -3.5641 -4.3116 30 1 -0.3633 -1.0276 0.0050 31 1 -0.3633 0.5182 0.8874 32 1 -0.3633 0.5095 -0.8925 33 1 1.7689 -0.1673 2.1364 34 1 1.6080 -1.7257 1.2905 35 1 3.9430 -1.3409 2.0634 36 1 4.0072 0.1518 1.0964 37 1 2.5400 -3.1203 0.5341 38 1 4.6225 -6.5760 -1.8024 39 1 3.8827 -9.5486 0.5697 40 1 5.0515 -9.0895 -0.6918 41 1 4.1690 -10.6307 -0.8139 42 1 3.3625 -9.9883 -3.0902 43 1 2.5018 -8.4488 -3.3275 44 1 4.2450 -8.4473 -2.9676 45 1 1.4358 -9.5508 0.0647 46 1 0.8613 -9.0932 -1.5567 47 1 1.7223 -10.6327 -1.3196 48 1 3.9886 0.0075 -1.4346 49 1 3.6546 -1.5654 -2.2006 50 1 2.9776 -0.6376 -4.7844 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071556908.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:30 Heat of formation + Delta-G solvation = 74.670806 kcal Electronic energy + Delta-G solvation = -30742.702094 eV Core-core repulsion = 26807.612175 eV Total energy + Delta-G solvation = -3935.089919 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.10969 -39.22590 -37.65787 -37.23006 -34.02836 -32.65165 -31.98401 -31.11810 -30.04944 -29.71357 -27.91638 -27.83688 -26.15494 -24.92913 -23.75154 -23.16076 -22.07709 -20.72276 -20.41189 -19.78558 -18.59105 -17.59366 -16.36654 -16.17571 -15.99597 -15.31777 -14.97201 -14.67296 -14.54427 -14.35754 -14.01092 -13.93545 -13.66483 -13.41950 -13.06951 -12.98898 -12.87018 -12.68280 -12.64037 -12.38936 -12.24489 -12.13232 -11.83930 -11.74250 -11.43140 -11.14439 -11.07628 -11.02018 -10.89092 -10.77776 -10.64123 -10.30706 -10.25324 -10.24258 -9.87819 -9.57844 -9.39445 -9.33922 -9.07385 -8.36350 -8.24361 -6.49867 -5.66768 -3.09997 1.30529 2.01271 2.06211 3.43154 3.48689 3.50524 3.68868 3.89210 4.04911 4.25150 4.35758 4.41643 4.57716 4.91662 4.97878 5.01991 5.14352 5.19524 5.26099 5.27587 5.34623 5.40641 5.44923 5.45301 5.53573 5.56392 5.61252 5.69908 5.71284 5.83403 6.06173 6.11460 6.21893 6.25397 6.43036 6.45098 6.49884 6.54355 6.61974 6.72073 6.78603 6.99647 7.14781 7.23371 7.46921 7.76762 7.92783 8.04662 8.30776 8.58337 8.84621 9.32650 9.97076 10.53560 11.41429 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011664 B = 0.004074 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.891393 B = 6870.700500 C = 7888.897771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.166 3.834 3 H 0.024 0.976 4 C -0.132 4.132 5 C -0.118 4.118 6 C 0.118 3.882 7 H 0.077 0.923 8 N -0.682 5.682 9 C 0.601 3.399 10 O -0.548 6.548 11 C -0.087 4.087 12 C 0.086 3.914 13 N -0.355 5.355 14 C 0.171 3.829 15 C -0.160 4.160 16 C -0.164 4.164 17 C -0.148 4.148 18 N -0.070 5.070 19 N -0.204 5.204 20 C 0.163 3.837 21 N -0.582 5.582 22 C -0.245 4.245 23 H 0.066 0.934 24 C 0.007 3.993 25 N -0.900 5.900 26 Si 0.894 3.106 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.287 1.287 30 H 0.052 0.948 31 H 0.036 0.964 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.403 0.597 38 H 0.198 0.802 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.069 0.931 47 H 0.078 0.922 48 H 0.026 0.974 49 H 0.095 0.905 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.850 -16.246 8.071 18.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.060 3.940 3 H 0.042 0.958 4 C -0.172 4.172 5 C -0.156 4.156 6 C 0.012 3.988 7 H 0.095 0.905 8 N -0.332 5.332 9 C 0.384 3.616 10 O -0.426 6.426 11 C -0.226 4.226 12 C -0.070 4.070 13 N -0.142 5.142 14 C 0.088 3.912 15 C -0.218 4.218 16 C -0.223 4.223 17 C -0.206 4.206 18 N -0.050 5.050 19 N -0.077 5.077 20 C 0.036 3.964 21 N -0.305 5.305 22 C -0.375 4.375 23 H 0.084 0.916 24 C -0.192 4.192 25 N -0.544 5.544 26 Si 0.725 3.275 27 H -0.210 1.210 28 H -0.217 1.217 29 H -0.214 1.214 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.239 0.761 38 H 0.215 0.785 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.088 0.912 47 H 0.097 0.903 48 H 0.044 0.956 49 H 0.113 0.887 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.349 -16.376 8.230 18.478 hybrid contribution 0.018 -0.488 -1.229 1.323 sum 2.367 -16.864 7.000 18.412 Atomic orbital electron populations 1.21795 0.96151 1.01285 1.00098 1.20453 0.92882 0.93554 0.87133 0.95811 1.22079 0.95140 1.00918 0.99015 1.21684 0.97092 1.00059 0.96763 1.21837 0.96972 0.81588 0.98407 0.90522 1.45647 1.29490 1.08049 1.49965 1.16663 0.83374 0.81951 0.79584 1.90768 1.25410 1.84403 1.42012 1.21651 0.97894 0.96688 1.06401 1.23189 0.97195 0.87289 0.99322 1.50739 1.19164 1.09203 1.35116 1.21023 0.98766 0.75820 0.95597 1.22271 0.97357 1.01174 1.00975 1.22311 1.03445 1.04132 0.92377 1.21984 0.94376 1.00174 1.04039 1.81892 1.09801 1.01832 1.11459 1.74628 1.11546 1.06125 1.15420 1.21161 0.83813 0.97005 0.94387 1.44016 1.02621 1.64850 1.19030 1.19031 0.95043 1.37418 0.85995 0.91621 1.25016 0.97784 0.99522 0.96893 1.69986 1.24104 1.43738 1.16607 0.86496 0.79680 0.80366 0.80983 1.20980 1.21736 1.21408 0.92889 0.94464 0.92095 0.92866 0.92415 0.92987 0.91075 0.76094 0.78491 0.91303 0.91374 0.89828 0.89576 0.91017 0.91070 0.90678 0.91163 0.90335 0.95609 0.88695 0.93755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 7.96 37.16 0.30 -2.29 16 2 C 0.17 3.41 3.49 -67.60 -0.24 3.18 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.25 5.21 -26.61 -0.14 -2.39 16 5 C -0.12 -1.95 5.59 -26.69 -0.15 -2.10 16 6 C 0.12 2.33 2.81 -67.81 -0.19 2.14 16 7 H 0.08 1.52 7.58 -51.93 -0.39 1.13 16 8 N -0.68 -13.41 4.91 -54.73 -0.27 -13.68 16 9 C 0.60 12.24 7.78 -12.47 -0.10 12.14 16 10 O -0.55 -12.36 16.53 5.29 0.09 -12.28 16 11 C -0.09 -1.56 6.99 -83.55 -0.58 -2.14 16 12 C 0.09 1.25 10.43 -16.84 -0.18 1.07 16 13 N -0.36 -4.58 3.44 -48.35 -0.17 -4.75 16 14 C 0.17 1.46 1.25 -131.82 -0.16 1.30 16 15 C -0.16 -1.04 8.74 37.15 0.32 -0.72 16 16 C -0.16 -1.19 8.30 37.16 0.31 -0.88 16 17 C -0.15 -1.16 8.11 37.16 0.30 -0.85 16 18 N -0.07 -1.12 12.91 60.35 0.78 -0.34 16 19 N -0.20 -3.67 12.04 32.85 0.40 -3.27 16 20 C 0.16 3.97 4.88 -3.71 -0.02 3.95 16 21 N -0.58 -14.30 2.90 -164.78 -0.48 -14.77 16 22 C -0.25 -6.69 8.57 -15.06 -0.13 -6.82 16 23 H 0.07 1.78 6.24 -52.48 -0.33 1.45 16 24 C 0.01 0.19 4.94 -17.43 -0.09 0.10 16 25 N -0.90 -26.81 11.23 55.49 0.62 -26.18 16 26 Si 0.89 22.69 29.58 -169.99 -5.03 17.67 16 27 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 29 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 30 H 0.05 1.03 7.43 -51.93 -0.39 0.65 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 1.26 7.63 -51.93 -0.40 0.87 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 1.01 6.40 -51.93 -0.33 0.67 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.40 7.65 6.46 -40.82 -0.26 7.39 16 38 H 0.20 2.31 7.63 -52.49 -0.40 1.91 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.50 7.44 -51.93 -0.39 0.11 16 45 H 0.07 0.64 8.07 -51.93 -0.42 0.22 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.09 2.71 6.15 -51.93 -0.32 2.39 16 50 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 395.09 15.07 5.95 5.95 Total: -1.00 -33.37 395.09 -7.10 -40.47 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -8.26 Total: 5.50 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: -0.74 Total: 5.69 kcal Atomic # 7 Polarization: -63.88 SS G_CDS: 0.88 Total: -63.00 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.09 Total: -12.28 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.03 Total: 17.67 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.37 -7.10 -40.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071556908.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.142 kcal (2) G-P(sol) polarization free energy of solvation -33.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds