Wall clock time and date at job start Tue Mar 31 2020 23:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.58723 * 2 1 4 4 C 1.53191 * 109.70031 * 120.35689 * 2 1 3 5 5 C 1.53050 * 109.30739 * 174.49002 * 4 2 1 6 6 C 1.53036 * 109.53676 * 298.63419 * 5 4 2 7 7 H 1.09006 * 109.51992 * 181.33098 * 6 5 4 8 8 N 1.46496 * 109.49871 * 301.41344 * 6 5 4 9 9 C 1.34779 * 119.99836 * 204.84231 * 8 6 5 10 10 O 1.21589 * 120.00234 * 359.97438 * 9 8 6 11 11 C 1.47531 * 119.99757 * 179.97438 * 9 8 6 12 12 C 1.36597 * 125.76945 * 179.97438 * 11 9 8 13 13 N 1.34807 * 106.83812 * 180.02562 * 12 11 9 14 14 C 1.46504 * 126.59248 * 179.97438 * 13 12 11 15 15 C 1.52995 * 109.47380 * 74.99811 * 14 13 12 16 16 C 1.53003 * 109.46964 * 314.99831 * 14 13 12 17 17 C 1.53005 * 109.47017 * 195.00021 * 14 13 12 18 18 N 1.40213 * 106.81239 * 0.22835 * 13 12 11 19 19 N 1.28756 * 108.36387 * 359.61273 * 18 13 12 20 20 C 1.53193 * 109.31570 * 61.36795 * 6 5 4 21 21 N 1.46924 * 109.58444 * 239.71677 * 2 1 3 22 22 C 1.36939 * 120.63381 * 6.44274 * 21 2 1 23 23 H 1.08004 * 119.99589 * 330.18177 * 22 21 2 24 24 C 1.38809 * 120.00609 * 150.18617 * 22 21 2 25 25 N 1.31624 * 119.99263 * 344.49418 * 24 22 21 26 26 Si 1.86795 * 120.00393 * 164.49546 * 24 22 21 27 27 H 1.48500 * 109.46922 * 60.00174 * 26 24 22 28 28 H 1.48501 * 109.47304 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.47075 * 300.00253 * 26 24 22 30 30 H 1.08995 * 109.47181 * 180.28109 * 1 2 3 31 31 H 1.08997 * 109.47037 * 300.28525 * 1 2 3 32 32 H 1.09004 * 109.47086 * 60.28034 * 1 2 3 33 33 H 1.08994 * 109.49663 * 294.44106 * 4 2 1 34 34 H 1.08998 * 109.50181 * 54.54412 * 4 2 1 35 35 H 1.09000 * 109.45540 * 178.61594 * 5 4 2 36 36 H 1.08999 * 109.46017 * 58.65798 * 5 4 2 37 37 H 0.97005 * 120.00210 * 24.84146 * 8 6 5 38 38 H 1.08002 * 126.57840 * 0.04435 * 12 11 9 39 39 H 1.09002 * 109.47142 * 59.99935 * 15 14 13 40 40 H 1.09000 * 109.47400 * 300.00400 * 15 14 13 41 41 H 1.08993 * 109.47331 * 179.97438 * 15 14 13 42 42 H 1.08997 * 109.47125 * 180.02562 * 16 14 13 43 43 H 1.09003 * 109.47049 * 299.99871 * 16 14 13 44 44 H 1.08991 * 109.46905 * 60.00424 * 16 14 13 45 45 H 1.09002 * 109.46940 * 299.99719 * 17 14 13 46 46 H 1.09001 * 109.47003 * 59.99609 * 17 14 13 47 47 H 1.08997 * 109.47116 * 179.97438 * 17 14 13 48 48 H 1.09001 * 109.58414 * 65.14953 * 20 6 5 49 49 H 1.08991 * 109.58893 * 185.43343 * 20 6 5 50 50 H 0.97001 * 119.99293 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0465 -0.7289 1.2445 5 6 3.5707 -0.8444 1.1673 6 6 3.9601 -1.6608 -0.0671 7 1 5.0446 -1.7630 -0.1089 8 7 3.3465 -2.9888 0.0113 9 6 3.9026 -4.0277 -0.6428 10 8 4.9133 -3.8628 -1.2984 11 6 3.2850 -5.3652 -0.5633 12 6 3.7463 -6.4954 -1.1762 13 7 2.8982 -7.4909 -0.8491 14 6 2.9875 -8.8897 -1.2755 15 6 4.1029 -9.5900 -0.4970 16 6 3.2966 -8.9477 -2.7729 17 6 1.6560 -9.5922 -1.0020 18 7 1.9109 -6.9289 -0.0272 19 7 2.1730 -5.6774 0.1239 20 6 3.4654 -0.9425 -1.3265 21 7 2.0225 -0.6980 -1.1954 22 6 1.1533 -1.1133 -2.1686 23 1 0.1402 -1.3826 -1.9087 24 6 1.5742 -1.1882 -3.4893 25 7 2.6832 -0.5849 -3.8616 26 14 0.5669 -2.1450 -4.7378 27 1 -0.7950 -1.5598 -4.8280 28 1 1.2258 -2.0712 -6.0666 29 1 0.4686 -3.5641 -4.3116 30 1 -0.3633 -1.0276 0.0050 31 1 -0.3633 0.5182 0.8874 32 1 -0.3633 0.5095 -0.8925 33 1 1.7689 -0.1673 2.1364 34 1 1.6080 -1.7257 1.2905 35 1 3.9430 -1.3409 2.0634 36 1 4.0072 0.1518 1.0964 37 1 2.5400 -3.1203 0.5341 38 1 4.6225 -6.5760 -1.8024 39 1 3.8827 -9.5486 0.5697 40 1 5.0515 -9.0895 -0.6918 41 1 4.1690 -10.6307 -0.8139 42 1 3.3625 -9.9883 -3.0902 43 1 2.5018 -8.4488 -3.3275 44 1 4.2450 -8.4473 -2.9676 45 1 1.4358 -9.5508 0.0647 46 1 0.8613 -9.0932 -1.5567 47 1 1.7223 -10.6327 -1.3196 48 1 3.9886 0.0075 -1.4346 49 1 3.6546 -1.5654 -2.2006 50 1 2.9776 -0.6376 -4.7844 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071556908.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:29 Heat of formation + Delta-G solvation = 51.986237 kcal Electronic energy + Delta-G solvation = -30743.685771 eV Core-core repulsion = 26807.612175 eV Total energy + Delta-G solvation = -3936.073596 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.29991 -40.82010 -39.08865 -38.28406 -35.77275 -34.49836 -33.08443 -32.56967 -31.76214 -31.27625 -28.51272 -28.43284 -27.85466 -26.79299 -24.87746 -24.52443 -23.83750 -22.13661 -21.85599 -21.02047 -20.30745 -18.70044 -18.19667 -17.46526 -17.12036 -17.05886 -16.60470 -15.94383 -15.77046 -15.65473 -15.51021 -15.18871 -14.99278 -14.97080 -14.63310 -14.37490 -14.03197 -13.71060 -13.59063 -13.39338 -13.32768 -13.20125 -12.97783 -12.86849 -12.80717 -12.61593 -12.57915 -12.47401 -12.41381 -12.34324 -12.12834 -12.09239 -11.98044 -11.56543 -11.27150 -11.23698 -11.09581 -11.02582 -10.51145 -10.37803 -9.88941 -8.53802 -7.80942 -5.25314 0.14802 0.67202 1.04028 1.37266 1.40003 1.45369 2.20498 2.42392 2.49911 3.20631 3.24583 3.33970 3.62928 3.66084 3.73876 3.75404 3.94163 4.05644 4.12506 4.18012 4.21015 4.51190 4.52011 4.54034 4.58057 4.64698 4.66097 4.73124 4.76895 4.76948 4.80611 4.83759 4.98014 5.03979 5.05752 5.10773 5.12813 5.17019 5.24319 5.27812 5.34958 5.54513 5.56686 5.63377 5.69389 5.75724 5.76386 6.46542 6.57547 6.94786 7.20982 7.28421 7.95081 8.45621 9.24106 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011664 B = 0.004074 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.891393 B = 6870.700500 C = 7888.897771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.156 3.844 3 H 0.019 0.981 4 C -0.121 4.121 5 C -0.110 4.110 6 C 0.126 3.874 7 H 0.074 0.926 8 N -0.679 5.679 9 C 0.596 3.404 10 O -0.579 6.579 11 C -0.118 4.118 12 C 0.100 3.900 13 N -0.338 5.338 14 C 0.157 3.843 15 C -0.155 4.155 16 C -0.163 4.163 17 C -0.147 4.147 18 N -0.082 5.082 19 N -0.226 5.226 20 C 0.173 3.827 21 N -0.595 5.595 22 C -0.236 4.236 23 H 0.068 0.932 24 C -0.049 4.049 25 N -0.932 5.932 26 Si 0.946 3.054 27 H -0.272 1.272 28 H -0.296 1.296 29 H -0.292 1.292 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.036 0.964 33 H 0.091 0.909 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.407 0.593 38 H 0.223 0.777 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.116 0.884 42 H 0.120 0.880 43 H 0.051 0.949 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.051 0.949 47 H 0.113 0.887 48 H 0.003 0.997 49 H 0.048 0.952 50 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.506 -18.370 9.750 20.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.050 3.950 3 H 0.037 0.963 4 C -0.160 4.160 5 C -0.148 4.148 6 C 0.020 3.980 7 H 0.092 0.908 8 N -0.328 5.328 9 C 0.381 3.619 10 O -0.459 6.459 11 C -0.258 4.258 12 C -0.058 4.058 13 N -0.125 5.125 14 C 0.076 3.924 15 C -0.213 4.213 16 C -0.221 4.221 17 C -0.204 4.204 18 N -0.061 5.061 19 N -0.099 5.099 20 C 0.046 3.954 21 N -0.319 5.319 22 C -0.367 4.367 23 H 0.085 0.915 24 C -0.244 4.244 25 N -0.579 5.579 26 Si 0.776 3.224 27 H -0.198 1.198 28 H -0.222 1.222 29 H -0.220 1.220 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.055 0.945 33 H 0.109 0.891 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.244 0.756 38 H 0.240 0.760 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.135 0.865 42 H 0.138 0.862 43 H 0.070 0.930 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.070 0.930 47 H 0.132 0.868 48 H 0.021 0.979 49 H 0.066 0.934 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.957 -18.522 9.955 21.118 hybrid contribution 0.108 0.090 -1.737 1.743 sum 2.065 -18.432 8.218 20.286 Atomic orbital electron populations 1.21717 0.94995 1.01015 1.00820 1.20753 0.93976 0.93342 0.86903 0.96317 1.21967 0.95051 1.00737 0.98285 1.21667 0.97029 1.00129 0.95950 1.21623 0.96680 0.81837 0.97880 0.90784 1.45623 1.29563 1.07815 1.49819 1.17043 0.83050 0.82991 0.78821 1.90735 1.26802 1.85139 1.43255 1.21500 0.99043 0.96527 1.08750 1.23518 0.97503 0.86572 0.98246 1.51163 1.17505 1.10515 1.33298 1.21633 1.00238 0.73540 0.96958 1.22289 0.96190 1.02756 1.00020 1.22368 1.02803 1.06194 0.90774 1.22024 0.93245 1.01917 1.03215 1.81787 1.10780 1.01290 1.12281 1.74586 1.11902 1.07111 1.16282 1.20855 0.84041 0.95482 0.95027 1.44226 1.02308 1.65534 1.19809 1.19297 0.95296 1.35610 0.86521 0.91474 1.25642 0.98993 1.01126 0.98673 1.70142 1.25821 1.45778 1.16198 0.85647 0.78958 0.78837 0.78917 1.19754 1.22210 1.21965 0.93606 0.90557 0.94528 0.89094 0.92683 0.89805 0.90191 0.75619 0.76044 0.92272 0.91203 0.86549 0.86201 0.92958 0.90701 0.91635 0.92998 0.86812 0.97868 0.93399 0.94702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.69 7.96 71.98 0.57 -4.11 16 2 C 0.16 6.21 3.49 44.98 0.16 6.36 16 3 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 4 C -0.12 -3.79 5.21 30.67 0.16 -3.63 16 5 C -0.11 -3.39 5.59 30.62 0.17 -3.22 16 6 C 0.13 5.01 2.81 45.07 0.13 5.13 16 7 H 0.07 2.99 7.58 -2.38 -0.02 2.97 16 8 N -0.68 -26.90 4.91 -445.34 -2.19 -29.09 16 9 C 0.60 24.82 7.78 86.69 0.67 25.50 16 10 O -0.58 -26.98 16.53 -4.00 -0.07 -27.04 16 11 C -0.12 -4.28 6.99 40.82 0.29 -4.00 16 12 C 0.10 2.81 10.43 83.85 0.87 3.69 16 13 N -0.34 -8.37 3.44 -306.89 -1.06 -9.43 16 14 C 0.16 2.34 1.25 3.60 0.00 2.34 16 15 C -0.15 -1.54 8.74 71.98 0.63 -0.91 16 16 C -0.16 -1.94 8.30 71.98 0.60 -1.34 16 17 C -0.15 -1.98 8.11 71.98 0.58 -1.39 16 18 N -0.08 -2.58 12.91 37.02 0.48 -2.10 16 19 N -0.23 -8.16 12.04 -49.99 -0.60 -8.76 16 20 C 0.17 8.74 4.88 86.36 0.42 9.16 16 21 N -0.60 -29.72 2.90 -675.23 -1.96 -31.68 16 22 C -0.24 -13.17 8.57 84.03 0.72 -12.46 16 23 H 0.07 3.67 6.24 -2.91 -0.02 3.65 16 24 C -0.05 -2.89 4.94 84.86 0.42 -2.47 16 25 N -0.93 -58.05 11.23 21.65 0.24 -57.81 16 26 Si 0.95 47.97 29.58 68.60 2.03 50.00 16 27 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 28 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 29 H -0.29 -14.90 7.11 99.48 0.71 -14.19 16 30 H 0.04 1.72 7.43 -2.39 -0.02 1.70 16 31 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.04 1.49 7.63 -2.38 -0.02 1.47 16 33 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.05 1.78 6.40 -2.39 -0.02 1.76 16 35 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.41 15.35 6.46 -92.70 -0.60 14.75 16 38 H 0.22 4.95 7.63 -2.91 -0.02 4.93 16 39 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.07 0.85 7.44 -2.39 -0.02 0.83 16 45 H 0.06 1.02 8.07 -2.39 -0.02 1.00 16 46 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 49 H 0.05 2.88 6.15 -2.39 -0.01 2.86 16 50 H 0.24 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -77.08 395.09 3.61 -73.47 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: 0.34 Total: 23.79 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: 6.40 Total: 18.66 kcal Atomic # 7 Polarization: -133.78 SS G_CDS: -5.09 Total: -138.87 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.07 Total: -27.04 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 50.00 kcal Total: -77.08 3.61 -73.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071556908.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.457 kcal (2) G-P(sol) polarization free energy of solvation -77.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds