Wall clock time and date at job start Tue Mar 31 2020 23:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.58904 * 2 1 4 4 C 1.53185 * 109.58578 * 120.43067 * 2 1 3 5 5 C 1.53037 * 109.31322 * 174.42079 * 4 2 1 6 6 C 1.53036 * 109.53885 * 298.63362 * 5 4 2 7 7 H 1.09003 * 109.50169 * 301.40859 * 6 5 4 8 8 N 1.46501 * 109.52694 * 181.33195 * 6 5 4 9 9 C 1.34773 * 120.00276 * 155.14579 * 8 6 5 10 10 O 1.21589 * 120.00302 * 359.97438 * 9 8 6 11 11 C 1.47524 * 120.00079 * 179.97438 * 9 8 6 12 12 C 1.36600 * 125.77306 * 179.71478 * 11 9 8 13 13 N 1.34814 * 106.83988 * 179.89968 * 12 11 9 14 14 C 1.46501 * 126.59371 * 180.13198 * 13 12 11 15 15 C 1.52992 * 109.47092 * 75.29198 * 14 13 12 16 16 C 1.53001 * 109.47051 * 195.29507 * 14 13 12 17 17 C 1.53004 * 109.47002 * 315.29619 * 14 13 12 18 18 N 1.40212 * 106.80939 * 0.36309 * 13 12 11 19 19 N 1.28752 * 108.36954 * 359.76495 * 18 13 12 20 20 C 1.53191 * 109.31401 * 61.36385 * 6 5 4 21 21 N 1.46923 * 108.77672 * 305.36978 * 20 6 5 22 22 C 1.36936 * 120.62934 * 233.59047 * 21 20 6 23 23 H 1.07995 * 120.00547 * 149.22205 * 22 21 20 24 24 C 1.38822 * 119.99709 * 329.21595 * 22 21 20 25 25 N 1.31620 * 119.99894 * 346.00001 * 24 22 21 26 26 Si 1.86801 * 119.99668 * 165.99941 * 24 22 21 27 27 H 1.48494 * 109.47391 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.46889 * 120.00367 * 26 24 22 29 29 H 1.48491 * 109.47167 * 239.99841 * 26 24 22 30 30 H 1.09000 * 109.46870 * 180.28025 * 1 2 3 31 31 H 1.08992 * 109.47013 * 300.28332 * 1 2 3 32 32 H 1.08997 * 109.46833 * 60.28132 * 1 2 3 33 33 H 1.09004 * 109.49961 * 294.37500 * 4 2 1 34 34 H 1.09005 * 109.50106 * 54.46724 * 4 2 1 35 35 H 1.09005 * 109.45981 * 178.61036 * 5 4 2 36 36 H 1.08999 * 109.46060 * 58.65346 * 5 4 2 37 37 H 0.97008 * 120.00080 * 335.14842 * 8 6 5 38 38 H 1.07996 * 126.57800 * 0.04006 * 12 11 9 39 39 H 1.08999 * 109.46929 * 60.00093 * 15 14 13 40 40 H 1.09004 * 109.47594 * 179.97438 * 15 14 13 41 41 H 1.09002 * 109.47518 * 300.00547 * 15 14 13 42 42 H 1.09000 * 109.47022 * 60.00488 * 16 14 13 43 43 H 1.09001 * 109.46669 * 179.97438 * 16 14 13 44 44 H 1.08999 * 109.47079 * 299.99973 * 16 14 13 45 45 H 1.08999 * 109.47373 * 59.99781 * 17 14 13 46 46 H 1.08994 * 109.47217 * 180.02562 * 17 14 13 47 47 H 1.09007 * 109.47170 * 299.99904 * 17 14 13 48 48 H 1.08998 * 109.58839 * 185.57402 * 20 6 5 49 49 H 1.09005 * 109.58192 * 65.15315 * 20 6 5 50 50 H 0.96997 * 119.99522 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7310 1.2444 5 6 3.5675 -0.8495 1.1690 6 6 3.9569 -1.6657 -0.0656 7 1 3.4983 -2.6529 -0.0087 8 7 5.4141 -1.8060 -0.1202 9 6 5.9669 -2.8465 -0.7745 10 8 5.2563 -3.6692 -1.3190 11 6 7.4344 -2.9874 -0.8299 12 6 8.1170 -3.9937 -1.4524 13 7 9.4296 -3.7472 -1.2684 14 6 10.5475 -4.5564 -1.7602 15 6 10.7244 -4.3228 -3.2617 16 6 11.8290 -4.1549 -1.0270 17 6 10.2564 -6.0367 -1.5052 18 7 9.5190 -2.5704 -0.5114 19 7 8.3257 -2.1507 -0.2714 20 6 3.4650 -0.9453 -1.3250 21 7 2.0226 -0.6980 -1.1954 22 6 1.1538 -1.1099 -2.1704 23 1 0.1443 -1.3920 -1.9102 24 6 1.5706 -1.1649 -3.4934 25 7 2.6879 -0.5715 -3.8566 26 14 0.5458 -2.0812 -4.7582 27 1 -0.6549 -2.6559 -4.1000 28 1 0.1218 -1.1411 -5.8267 29 1 1.3555 -3.1744 -5.3534 30 1 -0.3633 -1.0277 0.0050 31 1 -0.3633 0.5182 0.8874 32 1 -0.3633 0.5095 -0.8925 33 1 1.7660 -0.1696 2.1366 34 1 1.6029 -1.7270 1.2891 35 1 3.9378 -1.3475 2.0652 36 1 4.0061 0.1459 1.0994 37 1 5.9812 -1.1499 0.3145 38 1 7.6876 -4.8256 -1.9908 39 1 10.9317 -3.2683 -3.4434 40 1 11.5564 -4.9246 -3.6276 41 1 9.8114 -4.6088 -3.7841 42 1 11.7029 -4.3215 0.0428 43 1 12.6606 -4.7574 -1.3926 44 1 12.0363 -3.1004 -1.2087 45 1 9.3434 -6.3228 -2.0274 46 1 11.0882 -6.6388 -1.8706 47 1 10.1303 -6.2032 -0.4353 48 1 3.6519 -1.5690 -2.1992 49 1 3.9904 0.0038 -1.4317 50 1 2.9793 -0.6103 -4.7809 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071556909.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:38 Heat of formation + Delta-G solvation = 71.863509 kcal Electronic energy + Delta-G solvation = -29810.115398 eV Core-core repulsion = 25874.903745 eV Total energy + Delta-G solvation = -3935.211653 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 8.95 seconds Orbital eigenvalues (eV) -42.25831 -39.21223 -37.72473 -37.34025 -34.32718 -32.75074 -32.11181 -31.19908 -30.15581 -29.70857 -28.00152 -27.92745 -26.03427 -24.98295 -23.81372 -23.12597 -22.13809 -20.81605 -20.43158 -19.64925 -19.12965 -17.58523 -16.39554 -16.29133 -16.10948 -15.56408 -15.08261 -14.69896 -14.60862 -14.56568 -13.96634 -13.87524 -13.69310 -13.45281 -13.28498 -13.08388 -12.92191 -12.75656 -12.65575 -12.35309 -12.30676 -12.23300 -11.86850 -11.78885 -11.54023 -11.38416 -11.17813 -11.04652 -10.82699 -10.68064 -10.44257 -10.38371 -10.33319 -10.18334 -9.90401 -9.78490 -9.42610 -9.37308 -9.21667 -8.43171 -8.34897 -6.51678 -5.67395 -3.13603 1.16607 1.88159 1.89045 3.44639 3.52363 3.53514 3.54744 3.69919 3.92217 4.15845 4.25721 4.28793 4.58383 4.77803 4.87835 4.94240 5.04473 5.12752 5.13976 5.16498 5.25679 5.32325 5.43582 5.45293 5.48968 5.55656 5.63804 5.64983 5.71605 5.78153 5.93729 6.05419 6.21031 6.35084 6.36762 6.38989 6.46962 6.52724 6.58976 6.71141 6.83629 7.03239 7.12147 7.20503 7.40823 7.82773 7.86968 7.93176 8.12897 8.57613 8.68247 9.31572 9.95477 10.52063 11.40500 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014383 B = 0.002998 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.339381 B = 9336.221881 C =10705.855531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.164 3.836 3 H 0.025 0.975 4 C -0.125 4.125 5 C -0.117 4.117 6 C 0.117 3.883 7 H 0.083 0.917 8 N -0.703 5.703 9 C 0.599 3.401 10 O -0.533 6.533 11 C -0.091 4.091 12 C 0.090 3.910 13 N -0.354 5.354 14 C 0.170 3.830 15 C -0.162 4.162 16 C -0.148 4.148 17 C -0.163 4.163 18 N -0.069 5.069 19 N -0.208 5.208 20 C 0.169 3.831 21 N -0.583 5.583 22 C -0.251 4.251 23 H 0.070 0.930 24 C 0.006 3.994 25 N -0.900 5.900 26 Si 0.900 3.100 27 H -0.277 1.277 28 H -0.291 1.291 29 H -0.289 1.289 30 H 0.053 0.947 31 H 0.037 0.963 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.400 0.600 38 H 0.200 0.800 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.086 0.914 47 H 0.069 0.931 48 H 0.093 0.907 49 H 0.018 0.982 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.148 -8.354 6.978 20.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.165 4.165 5 C -0.155 4.155 6 C 0.012 3.988 7 H 0.101 0.899 8 N -0.353 5.353 9 C 0.382 3.618 10 O -0.408 6.408 11 C -0.231 4.231 12 C -0.067 4.067 13 N -0.141 5.141 14 C 0.088 3.912 15 C -0.220 4.220 16 C -0.205 4.205 17 C -0.221 4.221 18 N -0.049 5.049 19 N -0.081 5.081 20 C 0.042 3.958 21 N -0.307 5.307 22 C -0.381 4.381 23 H 0.087 0.913 24 C -0.193 4.193 25 N -0.544 5.544 26 Si 0.730 3.270 27 H -0.202 1.202 28 H -0.219 1.219 29 H -0.216 1.216 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.234 0.766 38 H 0.217 0.783 39 H 0.088 0.912 40 H 0.103 0.897 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.105 0.895 47 H 0.088 0.912 48 H 0.111 0.889 49 H 0.036 0.964 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 17.635 -7.939 7.067 20.591 hybrid contribution -0.624 -0.883 -1.120 1.557 sum 17.012 -8.822 5.947 20.065 Atomic orbital electron populations 1.21797 0.96042 1.01330 1.00170 1.20500 0.93023 0.93610 0.87096 0.95719 1.22039 0.94308 1.01273 0.98882 1.21679 0.97315 0.99799 0.96694 1.22032 0.77385 1.00963 0.98406 0.89896 1.45866 1.08678 1.26383 1.54355 1.16724 0.83964 0.82081 0.79075 1.90840 1.61461 1.42788 1.45746 1.21667 0.95941 0.96921 1.08553 1.23244 0.83618 1.00674 0.99142 1.50764 1.05817 1.20010 1.37462 1.21055 0.84809 0.90062 0.95323 1.22296 1.03701 1.03793 0.92249 1.21984 0.94196 1.03455 1.00897 1.22301 1.03823 0.92429 1.03574 1.81893 1.14761 0.96201 1.12015 1.74619 0.96511 1.21871 1.15132 1.21070 0.83551 0.96937 0.94220 1.44019 1.02620 1.64851 1.19198 1.19165 0.95414 1.37697 0.85775 0.91277 1.25126 0.97715 0.99286 0.97147 1.70013 1.23641 1.44204 1.16514 0.86264 0.79719 0.79416 0.81632 1.20220 1.21859 1.21582 0.92842 0.94396 0.92010 0.92691 0.92083 0.93003 0.92155 0.76580 0.78325 0.91164 0.89740 0.91211 0.91288 0.90254 0.90617 0.91016 0.89491 0.91177 0.88901 0.96386 0.93850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 7.96 37.16 0.30 -2.31 16 2 C 0.16 3.45 3.50 -67.60 -0.24 3.21 16 3 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.13 -2.20 5.37 -26.62 -0.14 -2.34 16 5 C -0.12 -1.99 5.36 -26.69 -0.14 -2.13 16 6 C 0.12 2.38 2.60 -67.81 -0.18 2.20 16 7 H 0.08 1.87 7.58 -51.93 -0.39 1.47 16 8 N -0.70 -12.82 5.08 -54.74 -0.28 -13.10 16 9 C 0.60 11.41 7.78 -12.48 -0.10 11.31 16 10 O -0.53 -11.90 16.53 5.29 0.09 -11.82 16 11 C -0.09 -1.46 6.99 -83.55 -0.58 -2.05 16 12 C 0.09 1.15 10.43 -16.83 -0.18 0.98 16 13 N -0.35 -3.99 3.44 -48.36 -0.17 -4.15 16 14 C 0.17 1.23 1.25 -131.82 -0.16 1.07 16 15 C -0.16 -1.02 8.74 37.15 0.32 -0.70 16 16 C -0.15 -0.93 8.11 37.16 0.30 -0.62 16 17 C -0.16 -0.87 8.30 37.16 0.31 -0.56 16 18 N -0.07 -0.97 12.91 60.35 0.78 -0.19 16 19 N -0.21 -3.28 12.04 32.85 0.40 -2.89 16 20 C 0.17 4.22 4.84 -3.71 -0.02 4.20 16 21 N -0.58 -14.80 2.98 -164.78 -0.49 -15.30 16 22 C -0.25 -6.95 8.54 -15.06 -0.13 -7.08 16 23 H 0.07 1.87 6.27 -52.49 -0.33 1.54 16 24 C 0.01 0.18 4.97 -17.43 -0.09 0.09 16 25 N -0.90 -27.04 11.21 55.49 0.62 -26.41 16 26 Si 0.90 22.51 29.58 -169.99 -5.03 17.48 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 29 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 30 H 0.05 1.04 7.44 -51.93 -0.39 0.65 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 1.27 7.63 -51.93 -0.40 0.88 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.40 6.45 8.29 -40.82 -0.34 6.11 16 38 H 0.20 2.08 7.62 -52.49 -0.40 1.68 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.07 0.56 8.06 -51.93 -0.42 0.14 16 45 H 0.07 0.38 7.43 -51.93 -0.39 -0.01 16 46 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 47 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.09 2.71 6.17 -51.93 -0.32 2.39 16 49 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 50 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 398.62 15.07 6.01 6.01 Total: -1.00 -33.99 398.62 -7.22 -41.21 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -8.42 Total: 3.89 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -0.72 Total: 5.27 kcal Atomic # 7 Polarization: -62.91 SS G_CDS: 0.86 Total: -62.04 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.82 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.03 Total: 17.48 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.99 -7.22 -41.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071556909.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.075 kcal (2) G-P(sol) polarization free energy of solvation -33.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.95 seconds