Wall clock time and date at job start Tue Mar 31 2020 23:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.70216 * 2 1 4 4 C 1.53197 * 109.58496 * 239.64781 * 2 1 3 5 5 C 1.53034 * 109.33823 * 185.58870 * 4 2 1 6 6 C 1.53046 * 109.53651 * 61.31991 * 5 4 2 7 7 H 1.08995 * 109.49641 * 58.64860 * 6 5 4 8 8 N 1.46500 * 109.49438 * 178.71440 * 6 5 4 9 9 C 1.34777 * 119.99733 * 204.93332 * 8 6 5 10 10 O 1.21597 * 119.99965 * 0.27639 * 9 8 6 11 11 C 1.47523 * 120.00004 * 180.02562 * 9 8 6 12 12 C 1.36601 * 125.77156 * 179.71585 * 11 9 8 13 13 N 1.34814 * 106.84136 * 179.83947 * 12 11 9 14 14 C 1.46499 * 126.59502 * 180.13086 * 13 12 11 15 15 C 1.52996 * 109.47154 * 75.31864 * 14 13 12 16 16 C 1.53002 * 109.46811 * 195.31438 * 14 13 12 17 17 C 1.52995 * 109.47046 * 315.31597 * 14 13 12 18 18 N 1.40209 * 106.80895 * 0.41646 * 13 12 11 19 19 N 1.28767 * 108.36832 * 359.73445 * 18 13 12 20 20 C 1.53186 * 109.33872 * 298.67664 * 6 5 4 21 21 N 1.46920 * 109.59200 * 120.35740 * 2 1 3 22 22 C 1.36940 * 120.62753 * 353.41787 * 21 2 1 23 23 H 1.07997 * 120.00336 * 29.00069 * 22 21 2 24 24 C 1.38813 * 119.99984 * 208.99910 * 22 21 2 25 25 N 1.31619 * 120.00172 * 15.03018 * 24 22 21 26 26 Si 1.86797 * 120.00001 * 195.02844 * 24 22 21 27 27 H 1.48498 * 109.47221 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.47073 * 120.00149 * 26 24 22 29 29 H 1.48506 * 109.47426 * 240.00059 * 26 24 22 30 30 H 1.08999 * 109.46613 * 299.64212 * 1 2 3 31 31 H 1.08998 * 109.47596 * 59.64028 * 1 2 3 32 32 H 1.09002 * 109.47149 * 179.64363 * 1 2 3 33 33 H 1.08998 * 109.49685 * 305.52695 * 4 2 1 34 34 H 1.09002 * 109.49596 * 65.59303 * 4 2 1 35 35 H 1.09002 * 109.43887 * 301.31427 * 5 4 2 36 36 H 1.09006 * 109.48864 * 181.35187 * 5 4 2 37 37 H 0.96998 * 120.00442 * 24.93523 * 8 6 5 38 38 H 1.08000 * 126.57716 * 359.97438 * 12 11 9 39 39 H 1.08998 * 109.47929 * 59.99748 * 15 14 13 40 40 H 1.09001 * 109.47264 * 180.02562 * 15 14 13 41 41 H 1.09007 * 109.46780 * 299.99573 * 15 14 13 42 42 H 1.09004 * 109.47287 * 60.00136 * 16 14 13 43 43 H 1.09002 * 109.47133 * 179.97438 * 16 14 13 44 44 H 1.08998 * 109.47321 * 300.00203 * 16 14 13 45 45 H 1.08994 * 109.47260 * 59.99924 * 17 14 13 46 46 H 1.09002 * 109.46894 * 180.02562 * 17 14 13 47 47 H 1.09004 * 109.47059 * 299.99868 * 17 14 13 48 48 H 1.08998 * 109.58741 * 174.40767 * 20 6 5 49 49 H 1.08997 * 109.59068 * 294.69456 * 20 6 5 50 50 H 0.96991 * 120.00302 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2455 5 6 3.5674 -0.8485 -1.1707 6 6 3.9569 -1.6657 0.0633 7 1 3.4988 -2.6530 0.0053 8 7 5.4142 -1.8052 0.1172 9 6 5.9677 -2.8470 0.7690 10 8 5.2574 -3.6738 1.3079 11 6 7.4353 -2.9873 0.8238 12 6 8.1188 -3.9886 1.4532 13 7 9.4310 -3.7467 1.2609 14 6 10.5493 -4.5561 1.7510 15 6 10.6701 -5.8249 0.9046 16 6 11.8456 -3.7498 1.6490 17 6 10.3003 -4.9389 3.2112 18 7 9.5197 -2.5677 0.5071 19 7 8.3260 -2.1483 0.2679 20 6 3.4652 -0.9470 1.3235 21 7 2.0227 -0.6995 1.1944 22 6 1.1538 -1.1135 2.1685 23 1 0.1361 -1.3681 1.9117 24 6 1.5810 -1.2061 3.4860 25 7 2.7040 -0.6277 3.8558 26 14 0.5622 -2.1513 4.7341 27 1 -0.6460 -2.7037 4.0704 28 1 1.3716 -3.2639 5.2930 29 1 0.1513 -1.2385 5.8310 30 1 -0.3632 0.5083 0.8932 31 1 -0.3634 0.5194 -0.8867 32 1 -0.3633 -1.0277 -0.0064 33 1 1.6030 -1.7253 -1.2914 34 1 1.7654 -0.1670 -2.1369 35 1 4.0061 0.1468 -1.1005 36 1 3.9377 -1.3459 -2.0673 37 1 5.9808 -1.1479 -0.3161 38 1 7.6901 -4.8166 1.9982 39 1 10.8474 -5.5523 -0.1357 40 1 11.5019 -6.4274 1.2696 41 1 9.7465 -6.3993 0.9773 42 1 11.7597 -2.8458 2.2520 43 1 12.6777 -4.3518 2.0141 44 1 12.0230 -3.4770 0.6087 45 1 9.3768 -5.5132 3.2839 46 1 11.1327 -5.5408 3.5760 47 1 10.2144 -4.0349 3.8142 48 1 3.6520 -1.5718 2.1969 49 1 3.9922 0.0008 1.4329 50 1 3.0024 -0.6920 4.7765 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071556910.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:56 Heat of formation + Delta-G solvation = 72.568281 kcal Electronic energy + Delta-G solvation = -29819.639440 eV Core-core repulsion = 25884.458348 eV Total energy + Delta-G solvation = -3935.181092 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.25571 -39.20969 -37.72497 -37.34090 -34.32759 -32.75912 -32.11045 -31.19924 -30.15772 -29.69768 -27.99563 -27.93196 -26.03746 -24.99062 -23.81311 -23.12472 -22.13776 -20.81344 -20.43162 -19.64799 -19.12709 -17.58304 -16.39946 -16.29483 -16.10025 -15.57172 -15.06520 -14.75302 -14.62574 -14.49929 -13.95592 -13.89205 -13.69570 -13.44386 -13.29304 -13.07602 -12.92462 -12.75876 -12.65309 -12.34109 -12.30293 -12.24268 -11.86649 -11.79326 -11.53688 -11.38900 -11.17682 -11.05270 -10.82819 -10.67409 -10.43943 -10.38270 -10.32896 -10.18391 -9.90186 -9.77825 -9.42067 -9.37718 -9.21568 -8.42587 -8.35032 -6.54155 -5.67102 -3.11586 1.16740 1.88334 1.89228 3.44931 3.52804 3.53901 3.55034 3.69979 3.92513 4.16137 4.25935 4.28825 4.58647 4.77709 4.88037 4.94662 5.04061 5.11870 5.14321 5.17055 5.26047 5.33563 5.43170 5.45469 5.49038 5.55468 5.62739 5.64972 5.72125 5.78384 5.93920 6.05098 6.20876 6.34663 6.36906 6.38919 6.46458 6.52326 6.58870 6.70863 6.83645 7.03347 7.11127 7.19804 7.41152 7.83891 7.87134 7.93180 8.13087 8.56758 8.68510 9.31414 9.95926 10.51357 11.40773 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014380 B = 0.003007 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.658002 B = 9309.172669 C =10681.645558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.164 3.836 3 H 0.025 0.975 4 C -0.125 4.125 5 C -0.117 4.117 6 C 0.117 3.883 7 H 0.083 0.917 8 N -0.703 5.703 9 C 0.599 3.401 10 O -0.533 6.533 11 C -0.091 4.091 12 C 0.090 3.910 13 N -0.354 5.354 14 C 0.170 3.830 15 C -0.161 4.161 16 C -0.148 4.148 17 C -0.164 4.164 18 N -0.069 5.069 19 N -0.208 5.208 20 C 0.168 3.832 21 N -0.584 5.584 22 C -0.250 4.250 23 H 0.071 0.929 24 C 0.005 3.995 25 N -0.900 5.900 26 Si 0.899 3.101 27 H -0.277 1.277 28 H -0.289 1.289 29 H -0.292 1.292 30 H 0.061 0.939 31 H 0.037 0.963 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.400 0.600 38 H 0.200 0.800 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.086 0.914 47 H 0.071 0.929 48 H 0.096 0.904 49 H 0.018 0.982 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.115 -8.188 -6.933 20.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.165 4.165 5 C -0.155 4.155 6 C 0.012 3.988 7 H 0.101 0.899 8 N -0.353 5.353 9 C 0.382 3.618 10 O -0.408 6.408 11 C -0.231 4.231 12 C -0.067 4.067 13 N -0.141 5.141 14 C 0.088 3.912 15 C -0.219 4.219 16 C -0.206 4.206 17 C -0.223 4.223 18 N -0.049 5.049 19 N -0.081 5.081 20 C 0.041 3.959 21 N -0.307 5.307 22 C -0.380 4.380 23 H 0.088 0.912 24 C -0.194 4.194 25 N -0.545 5.545 26 Si 0.730 3.270 27 H -0.202 1.202 28 H -0.216 1.216 29 H -0.219 1.219 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.234 0.766 38 H 0.217 0.783 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.093 0.907 45 H 0.090 0.910 46 H 0.105 0.895 47 H 0.090 0.910 48 H 0.114 0.886 49 H 0.036 0.964 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 17.602 -7.781 -7.028 20.488 hybrid contribution -0.621 -0.910 1.090 1.550 sum 16.981 -8.691 -5.938 19.979 Atomic orbital electron populations 1.21800 0.96031 1.01348 1.00187 1.20496 0.93012 0.93610 0.87102 0.95720 1.22042 0.94319 1.01281 0.98881 1.21682 0.97306 0.99793 0.96719 1.22028 0.77386 1.00966 0.98391 0.89890 1.45862 1.08672 1.26280 1.54464 1.16727 0.83962 0.82111 0.79042 1.90842 1.61490 1.42572 1.45927 1.21665 0.95941 0.97080 1.08392 1.23246 0.83618 1.00786 0.99023 1.50762 1.05830 1.19931 1.37526 1.21054 0.84836 0.90428 0.94929 1.22283 1.03722 0.95410 1.00465 1.21987 0.93946 1.00314 1.04323 1.22311 1.03882 1.03245 0.92813 1.81897 1.14744 0.95924 1.12317 1.74622 0.96512 1.21829 1.15170 1.21093 0.83446 0.97048 0.94349 1.44037 1.02655 1.64748 1.19271 1.19190 0.94683 1.37947 0.86144 0.91155 1.25074 0.97722 0.99588 0.97013 1.70012 1.23295 1.44495 1.16650 0.86267 0.79656 0.79618 0.81496 1.20244 1.21586 1.21883 0.92019 0.94370 0.92810 0.92085 0.92690 0.92167 0.92998 0.76584 0.78324 0.91272 0.89740 0.91320 0.91183 0.90253 0.90674 0.91012 0.89493 0.91013 0.88631 0.96435 0.93855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 7.94 37.16 0.30 -2.30 16 2 C 0.16 3.44 3.50 -67.60 -0.24 3.21 16 3 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.13 -2.20 5.37 -26.61 -0.14 -2.34 16 5 C -0.12 -1.99 5.36 -26.69 -0.14 -2.14 16 6 C 0.12 2.39 2.61 -67.81 -0.18 2.21 16 7 H 0.08 1.87 7.57 -51.93 -0.39 1.48 16 8 N -0.70 -12.85 5.08 -54.74 -0.28 -13.12 16 9 C 0.60 11.43 7.78 -12.48 -0.10 11.33 16 10 O -0.53 -11.93 16.52 5.28 0.09 -11.84 16 11 C -0.09 -1.47 6.99 -83.55 -0.58 -2.05 16 12 C 0.09 1.16 10.43 -16.83 -0.18 0.98 16 13 N -0.35 -3.99 3.44 -48.36 -0.17 -4.16 16 14 C 0.17 1.24 1.25 -131.82 -0.16 1.07 16 15 C -0.16 -0.91 8.74 37.16 0.32 -0.58 16 16 C -0.15 -0.95 8.11 37.16 0.30 -0.65 16 17 C -0.16 -0.97 8.30 37.15 0.31 -0.66 16 18 N -0.07 -0.98 12.91 60.35 0.78 -0.20 16 19 N -0.21 -3.29 12.04 32.85 0.40 -2.89 16 20 C 0.17 4.18 4.86 -3.71 -0.02 4.16 16 21 N -0.58 -14.81 2.99 -164.78 -0.49 -15.30 16 22 C -0.25 -6.92 8.60 -15.06 -0.13 -7.05 16 23 H 0.07 1.90 6.21 -52.49 -0.33 1.57 16 24 C 0.00 0.14 4.96 -17.43 -0.09 0.05 16 25 N -0.90 -27.04 11.14 55.49 0.62 -26.42 16 26 Si 0.90 22.52 29.58 -169.99 -5.03 17.49 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 28 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 29 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 30 H 0.06 1.27 7.62 -51.93 -0.40 0.87 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 1.04 7.45 -51.93 -0.39 0.65 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.40 6.45 8.29 -40.82 -0.34 6.12 16 38 H 0.20 2.09 7.62 -52.49 -0.40 1.69 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.07 0.55 8.06 -51.93 -0.42 0.13 16 45 H 0.07 0.42 7.43 -51.93 -0.39 0.03 16 46 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.10 2.79 6.06 -51.93 -0.31 2.47 16 49 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 398.43 15.07 6.00 6.00 Total: -1.00 -33.98 398.43 -7.22 -41.20 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -8.41 Total: 4.00 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -0.72 Total: 5.23 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: 0.86 Total: -62.09 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.84 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.03 Total: 17.49 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.98 -7.22 -41.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071556910.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.769 kcal (2) G-P(sol) polarization free energy of solvation -33.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds