Wall clock time and date at job start Tue Mar 31 2020 23:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.57978 * 2 1 4 4 C 1.53188 * 109.58752 * 120.27897 * 2 1 3 5 5 C 1.53034 * 109.31155 * 174.56546 * 4 2 1 6 6 C 1.53041 * 109.54075 * 298.63528 * 5 4 2 7 7 H 1.08999 * 109.49653 * 181.34896 * 6 5 4 8 8 N 1.46502 * 109.49814 * 301.41630 * 6 5 4 9 9 C 1.34778 * 119.99672 * 204.99814 * 8 6 5 10 10 O 1.21545 * 120.00222 * 359.97438 * 9 8 6 11 11 C 1.47871 * 119.99529 * 179.97438 * 9 8 6 12 12 N 1.34544 * 126.05116 * 359.69164 * 11 9 8 13 13 C 1.30877 * 107.27032 * 179.86892 * 12 11 9 14 14 N 1.34579 * 107.62024 * 0.38844 * 13 12 11 15 15 C 1.46500 * 125.74273 * 179.77137 * 14 13 12 16 16 C 1.52998 * 109.46962 * 75.00239 * 15 14 13 17 17 C 1.53001 * 109.46936 * 194.99975 * 15 14 13 18 18 C 1.52997 * 109.47620 * 315.00364 * 15 14 13 19 19 N 1.28849 * 108.50776 * 359.74930 * 14 13 12 20 20 C 1.53185 * 109.31022 * 61.36607 * 6 5 4 21 21 N 1.46927 * 109.58725 * 239.71926 * 2 1 3 22 22 C 1.36939 * 120.63151 * 6.45878 * 21 2 1 23 23 H 1.07996 * 119.99791 * 331.08811 * 22 21 2 24 24 C 1.38811 * 120.00019 * 151.08320 * 22 21 2 25 25 N 1.31611 * 120.00137 * 160.80976 * 24 22 21 26 26 Si 1.86806 * 119.99802 * 340.80966 * 24 22 21 27 27 H 1.48500 * 109.47035 * 92.34745 * 26 24 22 28 28 H 1.48496 * 109.46873 * 212.34993 * 26 24 22 29 29 H 1.48507 * 109.47127 * 332.35232 * 26 24 22 30 30 H 1.08996 * 109.47006 * 300.00152 * 1 2 3 31 31 H 1.08998 * 109.46738 * 59.99998 * 1 2 3 32 32 H 1.08999 * 109.46893 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.50007 * 294.51938 * 4 2 1 34 34 H 1.09003 * 109.49609 * 54.61418 * 4 2 1 35 35 H 1.08999 * 109.46019 * 58.66208 * 5 4 2 36 36 H 1.09001 * 109.45944 * 178.61823 * 5 4 2 37 37 H 0.97002 * 120.00009 * 24.99517 * 8 6 5 38 38 H 1.07997 * 126.18287 * 180.15839 * 13 12 11 39 39 H 1.08995 * 109.47427 * 59.99897 * 16 15 14 40 40 H 1.09011 * 109.47348 * 179.97438 * 16 15 14 41 41 H 1.08999 * 109.47618 * 299.99422 * 16 15 14 42 42 H 1.08998 * 109.47200 * 60.00163 * 17 15 14 43 43 H 1.09003 * 109.46991 * 180.02562 * 17 15 14 44 44 H 1.08995 * 109.47194 * 299.99944 * 17 15 14 45 45 H 1.08995 * 109.47143 * 59.99495 * 18 15 14 46 46 H 1.08998 * 109.47423 * 180.02562 * 18 15 14 47 47 H 1.09005 * 109.46872 * 300.00245 * 18 15 14 48 48 H 1.09001 * 109.58962 * 65.15353 * 20 6 5 49 49 H 1.09005 * 109.59137 * 185.43311 * 20 6 5 50 50 H 0.97003 * 119.99830 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7277 1.2463 5 6 3.5678 -0.8432 1.1729 6 6 3.9604 -1.6607 -0.0599 7 1 5.0449 -1.7628 -0.0984 8 7 3.3466 -2.9887 0.0183 9 6 3.9061 -4.0289 -0.6310 10 8 4.9196 -3.8651 -1.2816 11 6 3.2869 -5.3693 -0.5516 12 7 2.1743 -5.6882 0.1343 13 6 1.9564 -6.9654 -0.0507 14 7 2.9378 -7.4355 -0.8425 15 6 3.0813 -8.8210 -1.2964 16 6 2.0529 -9.1079 -2.3922 17 6 4.4911 -9.0321 -1.8522 18 6 2.8500 -9.7701 -0.1188 19 7 3.7295 -6.4619 -1.1345 20 6 3.4686 -0.9436 -1.3210 21 7 2.0226 -0.6980 -1.1954 22 6 1.1535 -1.1129 -2.1688 23 1 0.1361 -1.3680 -1.9113 24 6 1.5800 -1.2055 -3.4866 25 7 0.9062 -1.9397 -4.3463 26 14 3.1103 -0.2880 -4.0396 27 1 4.2941 -1.1748 -3.9071 28 1 2.9557 0.1226 -5.4582 29 1 3.2978 0.9175 -3.1928 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7639 -0.1653 2.1371 34 1 1.6050 -1.7245 1.2922 35 1 4.0045 0.1530 1.1022 36 1 3.9381 -1.3389 2.0703 37 1 2.5376 -3.1193 0.5373 38 1 1.1391 -7.5389 0.3609 39 1 2.2176 -8.4318 -3.2311 40 1 2.1599 -10.1387 -2.7303 41 1 1.0485 -8.9576 -1.9963 42 1 5.2238 -8.8278 -1.0715 43 1 4.5978 -10.0629 -2.1903 44 1 4.6559 -8.3561 -2.6911 45 1 1.8457 -9.6197 0.2771 46 1 2.9572 -10.8009 -0.4565 47 1 3.5827 -9.5657 0.6619 48 1 3.9920 0.0064 -1.4288 49 1 3.6600 -1.5672 -2.1942 50 1 1.2041 -2.0041 -5.2672 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071821108.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:41 Heat of formation + Delta-G solvation = 79.833052 kcal Electronic energy + Delta-G solvation = -30863.964486 eV Core-core repulsion = 26929.098419 eV Total energy + Delta-G solvation = -3934.866068 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 3.77 seconds Orbital eigenvalues (eV) -43.32021 -39.46323 -37.77665 -37.24213 -34.18816 -32.72424 -32.43905 -31.14991 -30.60113 -30.33384 -27.89965 -27.75575 -26.46606 -24.97363 -24.19370 -22.90196 -22.58101 -20.79703 -20.19209 -20.05971 -18.80615 -17.79870 -16.55924 -16.45419 -16.40282 -15.45337 -15.34802 -14.77056 -14.53269 -14.48722 -14.31765 -13.98402 -13.63494 -13.44406 -13.33501 -13.04756 -12.86906 -12.78715 -12.66629 -12.45744 -12.17094 -12.02154 -11.95600 -11.72640 -11.63383 -11.42508 -11.27491 -11.19186 -10.87504 -10.45798 -10.34440 -10.23639 -10.19841 -10.17933 -9.88279 -9.73086 -9.54834 -9.33013 -9.27257 -8.62264 -8.31079 -6.80039 -5.82234 -3.18675 1.69000 2.19022 2.37226 3.47216 3.51100 3.59331 3.60889 3.89435 4.06229 4.29537 4.34698 4.40870 4.67224 4.79120 4.96314 5.00579 5.02506 5.17453 5.23789 5.25626 5.33645 5.35015 5.39102 5.40371 5.43550 5.55457 5.58243 5.80074 5.85139 5.94173 6.03416 6.06023 6.19392 6.23508 6.31280 6.33586 6.39501 6.46748 6.52841 6.57539 6.60586 6.67626 6.80187 7.03734 7.08321 7.14469 7.96300 8.09421 8.32287 8.46972 8.73920 9.05561 9.85978 10.22972 11.33455 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013101 B = 0.003918 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.808395 B = 7144.123603 C = 7790.328074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.170 3.830 3 H 0.029 0.971 4 C -0.134 4.134 5 C -0.118 4.118 6 C 0.129 3.871 7 H 0.082 0.918 8 N -0.680 5.680 9 C 0.616 3.384 10 O -0.531 6.531 11 C 0.152 3.848 12 N -0.478 5.478 13 C 0.185 3.815 14 N -0.296 5.296 15 C 0.168 3.832 16 C -0.161 4.161 17 C -0.148 4.148 18 C -0.158 4.158 19 N -0.251 5.251 20 C 0.113 3.887 21 N -0.598 5.598 22 C -0.253 4.253 23 H 0.090 0.910 24 C 0.027 3.973 25 N -0.910 5.910 26 Si 0.874 3.126 27 H -0.284 1.284 28 H -0.305 1.305 29 H -0.270 1.270 30 H 0.039 0.961 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.408 0.592 38 H 0.219 0.781 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.086 0.914 47 H 0.068 0.932 48 H 0.034 0.966 49 H 0.080 0.920 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.373 -14.387 12.414 19.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.047 0.953 4 C -0.173 4.173 5 C -0.156 4.156 6 C 0.023 3.977 7 H 0.100 0.900 8 N -0.331 5.331 9 C 0.398 3.602 10 O -0.405 6.405 11 C -0.128 4.128 12 N -0.203 5.203 13 C -0.111 4.111 14 N -0.093 5.093 15 C 0.086 3.914 16 C -0.220 4.220 17 C -0.206 4.206 18 C -0.216 4.216 19 N -0.089 5.089 20 C -0.014 4.014 21 N -0.322 5.322 22 C -0.381 4.381 23 H 0.107 0.893 24 C -0.172 4.172 25 N -0.553 5.553 26 Si 0.704 3.296 27 H -0.212 1.212 28 H -0.234 1.234 29 H -0.196 1.196 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.245 0.755 38 H 0.235 0.765 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.089 0.911 46 H 0.105 0.895 47 H 0.087 0.913 48 H 0.052 0.948 49 H 0.098 0.902 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.455 -14.061 11.567 18.532 hybrid contribution 0.140 0.060 -0.307 0.343 sum 3.595 -14.001 11.259 18.323 Atomic orbital electron populations 1.21804 0.95372 1.01871 1.00301 1.20470 0.93549 0.93364 0.86230 0.95301 1.22082 0.94885 1.01337 0.98991 1.21690 0.97340 0.99985 0.96589 1.21541 0.97230 0.81614 0.97322 0.89963 1.45501 1.29621 1.07333 1.50681 1.16214 0.83199 0.81112 0.79691 1.90782 1.24740 1.83960 1.41000 1.23790 0.94118 0.95253 0.99616 1.71270 1.15108 1.11141 1.22827 1.26238 0.96607 0.91542 0.96705 1.47711 1.18012 1.09102 1.34453 1.21100 0.99218 0.75215 0.95900 1.22276 0.98142 1.03443 0.98096 1.21986 0.92927 1.02838 1.02833 1.22242 1.03243 0.99245 0.96908 1.74271 1.18127 0.95797 1.20701 1.21835 0.85823 0.97146 0.96565 1.44436 1.01598 1.65581 1.20594 1.18839 0.95472 1.38175 0.85593 0.89279 1.25259 0.97279 0.98733 0.95899 1.69815 1.41316 1.39667 1.04549 0.87057 0.84222 0.81448 0.76860 1.21175 1.23388 1.19554 0.94223 0.91840 0.92442 0.92315 0.91947 0.90832 0.92259 0.75475 0.76517 0.90979 0.89782 0.91267 0.91380 0.90502 0.90414 0.91137 0.89500 0.91271 0.94835 0.90199 0.93056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 7.95 37.16 0.30 -2.20 16 2 C 0.17 3.27 3.49 -67.60 -0.24 3.04 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -2.10 5.21 -26.62 -0.14 -2.24 16 5 C -0.12 -1.80 5.59 -26.69 -0.15 -1.95 16 6 C 0.13 2.47 2.81 -67.81 -0.19 2.28 16 7 H 0.08 1.55 7.58 -51.93 -0.39 1.16 16 8 N -0.68 -13.47 4.92 -54.63 -0.27 -13.73 16 9 C 0.62 13.54 7.80 -12.32 -0.10 13.44 16 10 O -0.53 -13.15 16.75 5.33 0.09 -13.06 16 11 C 0.15 3.04 7.96 -156.36 -1.24 1.79 16 12 N -0.48 -8.29 11.09 -12.37 -0.14 -8.43 16 13 C 0.18 2.42 11.71 -90.48 -1.06 1.36 16 14 N -0.30 -4.01 3.17 -49.84 -0.16 -4.17 16 15 C 0.17 1.52 1.23 -131.82 -0.16 1.35 16 16 C -0.16 -1.29 8.72 37.16 0.32 -0.97 16 17 C -0.15 -1.36 8.04 37.16 0.30 -1.06 16 18 C -0.16 -0.89 8.28 37.16 0.31 -0.58 16 19 N -0.25 -4.60 11.09 32.07 0.36 -4.24 16 20 C 0.11 2.61 3.81 -3.56 -0.01 2.60 16 21 N -0.60 -14.17 2.68 -164.55 -0.44 -14.61 16 22 C -0.25 -7.07 9.05 -15.06 -0.14 -7.20 16 23 H 0.09 2.63 6.38 -52.49 -0.34 2.29 16 24 C 0.03 0.81 5.25 -17.43 -0.09 0.72 16 25 N -0.91 -28.99 13.97 55.49 0.78 -28.22 16 26 Si 0.87 23.85 24.35 -169.99 -4.14 19.71 16 27 H -0.28 -7.93 6.62 56.52 0.37 -7.56 16 28 H -0.31 -8.44 7.11 56.52 0.40 -8.04 16 29 H -0.27 -7.10 6.62 56.52 0.37 -6.73 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 1.28 7.64 -51.93 -0.40 0.88 16 32 H 0.06 1.11 7.42 -51.93 -0.39 0.73 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 1.02 6.40 -51.93 -0.33 0.69 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.41 7.67 6.48 -40.82 -0.26 7.40 16 38 H 0.22 1.71 7.53 -52.49 -0.40 1.31 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.45 8.14 -51.92 -0.42 0.02 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.90 8.02 -51.93 -0.42 0.49 16 45 H 0.07 0.31 7.34 -51.93 -0.38 -0.07 16 46 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 47 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.03 0.76 7.04 -51.93 -0.37 0.40 16 49 H 0.08 2.17 4.62 -51.93 -0.24 1.93 16 50 H 0.26 7.99 8.31 -40.82 -0.34 7.65 16 LS Contribution 387.73 15.07 5.84 5.84 Total: -1.00 -37.17 387.73 -8.54 -45.71 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -8.17 Total: 4.83 kcal Atomic # 6 Polarization: 12.67 SS G_CDS: -2.29 Total: 10.37 kcal Atomic # 7 Polarization: -73.53 SS G_CDS: 0.13 Total: -73.41 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.09 Total: -13.06 kcal Atomic # 14 Polarization: 23.85 SS G_CDS: -4.14 Total: 19.71 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.17 -8.54 -45.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071821108.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.546 kcal (2) G-P(sol) polarization free energy of solvation -37.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.77 seconds