Wall clock time and date at job start Tue Mar 31 2020 23:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.58489 * 2 1 4 4 C 1.53195 * 109.58280 * 120.42533 * 2 1 3 5 5 C 1.53039 * 109.31344 * 174.42084 * 4 2 1 6 6 C 1.53039 * 109.53914 * 298.63611 * 5 4 2 7 7 H 1.08996 * 109.49562 * 301.41179 * 6 5 4 8 8 N 1.46499 * 109.52455 * 181.33205 * 6 5 4 9 9 C 1.34769 * 119.99933 * 155.14536 * 8 6 5 10 10 O 1.21560 * 120.00303 * 0.02562 * 9 8 6 11 11 C 1.47873 * 120.00174 * 179.97438 * 9 8 6 12 12 N 1.34550 * 126.04514 * 359.69086 * 11 9 8 13 13 C 1.30875 * 107.26871 * 179.86558 * 12 11 9 14 14 N 1.34580 * 107.62297 * 0.39126 * 13 12 11 15 15 C 1.46501 * 125.74774 * 179.72779 * 14 13 12 16 16 C 1.53000 * 109.47239 * 74.99896 * 15 14 13 17 17 C 1.53000 * 109.47356 * 194.99902 * 15 14 13 18 18 C 1.52999 * 109.47115 * 315.00209 * 15 14 13 19 19 N 1.28856 * 108.50864 * 359.74993 * 14 13 12 20 20 C 1.53192 * 109.31156 * 61.36127 * 6 5 4 21 21 N 1.46927 * 108.77872 * 305.36275 * 20 6 5 22 22 C 1.36928 * 120.63300 * 233.58728 * 21 20 6 23 23 H 1.08004 * 120.00160 * 150.86664 * 22 21 20 24 24 C 1.38809 * 120.00407 * 330.86657 * 22 21 20 25 25 N 1.31620 * 119.99787 * 343.81676 * 24 22 21 26 26 Si 1.86793 * 120.00361 * 163.81680 * 24 22 21 27 27 H 1.48504 * 109.47031 * 94.31122 * 26 24 22 28 28 H 1.48496 * 109.47382 * 214.30849 * 26 24 22 29 29 H 1.48497 * 109.47172 * 334.31467 * 26 24 22 30 30 H 1.08999 * 109.47361 * 180.28384 * 1 2 3 31 31 H 1.08999 * 109.47438 * 300.28980 * 1 2 3 32 32 H 1.09003 * 109.46782 * 60.28949 * 1 2 3 33 33 H 1.09002 * 109.49960 * 294.37559 * 4 2 1 34 34 H 1.09004 * 109.49605 * 54.46855 * 4 2 1 35 35 H 1.09001 * 109.46114 * 178.61333 * 5 4 2 36 36 H 1.09000 * 109.44758 * 58.64526 * 5 4 2 37 37 H 0.96994 * 119.99830 * 335.13859 * 8 6 5 38 38 H 1.08000 * 126.18602 * 180.15874 * 13 12 11 39 39 H 1.09003 * 109.46753 * 60.00164 * 16 15 14 40 40 H 1.09001 * 109.47433 * 179.97438 * 16 15 14 41 41 H 1.09006 * 109.46972 * 300.00404 * 16 15 14 42 42 H 1.09009 * 109.46797 * 59.99949 * 17 15 14 43 43 H 1.08995 * 109.47239 * 179.97438 * 17 15 14 44 44 H 1.08998 * 109.47198 * 300.00720 * 17 15 14 45 45 H 1.08998 * 109.47416 * 59.99510 * 18 15 14 46 46 H 1.08995 * 109.47334 * 179.97438 * 18 15 14 47 47 H 1.09002 * 109.46856 * 299.99680 * 18 15 14 48 48 H 1.09007 * 109.58736 * 185.57656 * 20 6 5 49 49 H 1.09002 * 109.70476 * 65.22585 * 20 6 5 50 50 H 0.96998 * 120.00378 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0434 -0.7309 1.2446 5 6 3.5674 -0.8495 1.1692 6 6 3.9568 -1.6657 -0.0653 7 1 3.4982 -2.6529 -0.0083 8 7 5.4141 -1.8060 -0.1198 9 6 5.9669 -2.8467 -0.7739 10 8 5.2563 -3.6686 -1.3191 11 6 7.4378 -2.9880 -0.8294 12 7 8.3350 -2.1506 -0.2779 13 6 9.5250 -2.6242 -0.5470 14 7 9.3626 -3.7472 -1.2707 15 6 10.4393 -4.5946 -1.7890 16 6 11.0402 -5.4130 -0.6445 17 6 9.8771 -5.5406 -2.8520 18 6 11.5254 -3.7152 -2.4120 19 7 8.1005 -3.9513 -1.4313 20 6 3.4650 -0.9454 -1.3247 21 7 2.0225 -0.6982 -1.1953 22 6 1.1538 -1.1101 -2.1703 23 1 0.1365 -1.3668 -1.9139 24 6 1.5805 -1.1978 -3.4883 25 7 2.6908 -0.5978 -3.8618 26 14 0.5790 -2.1674 -4.7317 27 1 -0.3431 -1.2499 -5.4480 28 1 1.4929 -2.8124 -5.7084 29 1 -0.2090 -3.2105 -4.0274 30 1 -0.3634 -1.0276 0.0051 31 1 -0.3634 0.5183 0.8873 32 1 -0.3633 0.5094 -0.8926 33 1 1.7659 -0.1695 2.1367 34 1 1.6028 -1.7269 1.2892 35 1 3.9376 -1.3475 2.0654 36 1 4.0058 0.1460 1.0995 37 1 5.9810 -1.1499 0.3148 38 1 10.4670 -2.1900 -0.2462 39 1 10.2664 -6.0395 -0.2006 40 1 11.8410 -6.0438 -1.0302 41 1 11.4407 -4.7390 0.1129 42 1 9.4490 -4.9574 -3.6675 43 1 10.6783 -6.1707 -3.2380 44 1 9.1033 -6.1670 -2.4082 45 1 11.9259 -3.0412 -1.6548 46 1 12.3267 -4.3456 -2.7973 47 1 11.0973 -3.1322 -3.2275 48 1 3.6518 -1.5692 -2.1990 49 1 3.9901 0.0035 -1.4341 50 1 2.9892 -0.6593 -4.7827 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071821109.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:22 Heat of formation + Delta-G solvation = 72.401244 kcal Electronic energy + Delta-G solvation = -29898.580726 eV Core-core repulsion = 25963.392391 eV Total energy + Delta-G solvation = -3935.188335 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 27.20 seconds Orbital eigenvalues (eV) -43.49009 -39.25004 -37.71510 -37.27408 -34.33968 -32.82001 -32.56803 -31.19111 -30.35963 -29.73495 -28.02823 -27.87563 -26.21441 -25.10187 -23.95792 -23.03818 -22.15966 -20.74613 -20.21713 -19.90558 -19.20466 -17.70526 -16.61227 -16.53147 -16.31675 -15.66279 -15.18141 -14.76249 -14.59682 -14.45554 -13.95569 -13.84124 -13.69234 -13.41459 -13.27296 -13.16883 -12.93500 -12.76358 -12.63557 -12.30310 -12.28900 -12.13372 -11.79260 -11.76507 -11.40922 -11.37544 -11.04094 -10.82416 -10.62152 -10.44675 -10.41175 -10.36334 -10.31863 -10.17867 -9.90865 -9.79321 -9.49485 -9.44137 -9.35385 -8.42987 -8.32840 -6.52344 -5.65358 -3.09134 1.54082 2.03981 2.20694 3.38688 3.48476 3.56090 3.58289 3.76959 3.92673 4.16324 4.19142 4.28254 4.60813 4.64501 4.87898 4.90968 5.06033 5.08696 5.19549 5.25200 5.34791 5.43591 5.44137 5.46309 5.57530 5.62415 5.66526 5.78118 5.86714 6.04781 6.07802 6.21039 6.34116 6.35734 6.38832 6.47385 6.50194 6.53595 6.58952 6.71599 6.83500 7.02055 7.12570 7.21004 7.41281 7.83786 7.87927 7.95437 8.19398 8.58427 8.69024 9.33132 9.98048 10.53484 11.42778 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014348 B = 0.003049 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.993283 B = 9181.438276 C =10556.916105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.164 3.836 3 H 0.025 0.975 4 C -0.125 4.125 5 C -0.116 4.116 6 C 0.119 3.881 7 H 0.084 0.916 8 N -0.699 5.699 9 C 0.609 3.391 10 O -0.512 6.512 11 C 0.148 3.852 12 N -0.484 5.484 13 C 0.184 3.816 14 N -0.296 5.296 15 C 0.167 3.833 16 C -0.159 4.159 17 C -0.150 4.150 18 C -0.160 4.160 19 N -0.249 5.249 20 C 0.168 3.832 21 N -0.583 5.583 22 C -0.252 4.252 23 H 0.070 0.930 24 C 0.006 3.994 25 N -0.899 5.899 26 Si 0.899 3.101 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.278 1.278 30 H 0.053 0.947 31 H 0.037 0.963 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.402 0.598 38 H 0.219 0.781 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.087 0.913 47 H 0.071 0.929 48 H 0.093 0.907 49 H 0.019 0.981 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.130 -5.190 8.978 22.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.165 4.165 5 C -0.154 4.154 6 C 0.014 3.986 7 H 0.102 0.898 8 N -0.350 5.350 9 C 0.390 3.610 10 O -0.384 6.384 11 C -0.132 4.132 12 N -0.210 5.210 13 C -0.112 4.112 14 N -0.093 5.093 15 C 0.085 3.915 16 C -0.217 4.217 17 C -0.207 4.207 18 C -0.218 4.218 19 N -0.087 5.087 20 C 0.041 3.959 21 N -0.306 5.306 22 C -0.382 4.382 23 H 0.088 0.912 24 C -0.193 4.193 25 N -0.543 5.543 26 Si 0.729 3.271 27 H -0.216 1.216 28 H -0.216 1.216 29 H -0.203 1.203 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.236 0.764 38 H 0.235 0.765 39 H 0.088 0.912 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.088 0.912 46 H 0.106 0.894 47 H 0.090 0.910 48 H 0.112 0.888 49 H 0.037 0.963 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 19.219 -6.018 8.230 21.756 hybrid contribution 0.435 -0.035 -0.494 0.659 sum 19.653 -6.053 7.736 21.971 Atomic orbital electron populations 1.21803 0.96039 1.01362 1.00175 1.20495 0.93038 0.93597 0.87086 0.95710 1.22046 0.94261 1.01325 0.98892 1.21675 0.97345 0.99768 0.96614 1.22054 0.76999 1.01084 0.98499 0.89823 1.45765 1.08690 1.26145 1.54383 1.16272 0.82585 0.82448 0.79727 1.90866 1.60799 1.42307 1.44395 1.24002 0.96665 0.91523 1.00986 1.71275 0.98427 1.27877 1.23391 1.26256 0.99433 0.88339 0.97141 1.47761 1.04806 1.19720 1.36992 1.21126 0.84132 0.90606 0.95619 1.22259 1.01855 1.00367 0.97223 1.22004 1.02041 0.98988 0.97705 1.22260 0.97534 1.00193 1.01832 1.74330 0.90118 1.23880 1.20323 1.21082 0.83560 0.97014 0.94281 1.44021 1.02604 1.64846 1.19175 1.19124 0.94754 1.38237 0.86067 0.91225 1.25065 0.97796 0.99414 0.97018 1.70013 1.24055 1.43573 1.16669 0.86335 0.79300 0.80066 0.81405 1.21618 1.21624 1.20347 0.92809 0.94380 0.92007 0.92640 0.92040 0.92946 0.92104 0.76384 0.76455 0.91239 0.89681 0.91404 0.91111 0.90419 0.90459 0.91177 0.89414 0.91032 0.88847 0.96309 0.93802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 7.94 37.16 0.30 -2.33 16 2 C 0.16 3.47 3.50 -67.60 -0.24 3.23 16 3 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.13 -2.21 5.37 -26.61 -0.14 -2.36 16 5 C -0.12 -1.99 5.36 -26.69 -0.14 -2.13 16 6 C 0.12 2.46 2.60 -67.81 -0.18 2.29 16 7 H 0.08 1.94 7.58 -51.93 -0.39 1.54 16 8 N -0.70 -13.18 5.08 -54.63 -0.28 -13.45 16 9 C 0.61 12.69 7.80 -12.32 -0.10 12.60 16 10 O -0.51 -12.74 16.75 5.31 0.09 -12.66 16 11 C 0.15 2.66 7.96 -156.35 -1.24 1.42 16 12 N -0.48 -7.19 11.09 -12.36 -0.14 -7.33 16 13 C 0.18 1.99 11.71 -90.48 -1.06 0.93 16 14 N -0.30 -3.45 3.17 -49.84 -0.16 -3.61 16 15 C 0.17 1.25 1.23 -131.82 -0.16 1.08 16 16 C -0.16 -0.85 8.72 37.16 0.32 -0.53 16 17 C -0.15 -1.24 8.04 37.16 0.30 -0.94 16 18 C -0.16 -0.76 8.28 37.16 0.31 -0.46 16 19 N -0.25 -4.12 11.09 32.08 0.36 -3.76 16 20 C 0.17 4.25 4.87 -3.71 -0.02 4.23 16 21 N -0.58 -14.99 2.99 -164.77 -0.49 -15.48 16 22 C -0.25 -7.09 8.59 -15.06 -0.13 -7.22 16 23 H 0.07 1.90 6.22 -52.48 -0.33 1.57 16 24 C 0.01 0.18 4.93 -17.43 -0.09 0.09 16 25 N -0.90 -27.50 11.22 55.49 0.62 -26.88 16 26 Si 0.90 23.03 29.58 -169.99 -5.03 18.00 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 28 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 29 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 30 H 0.05 1.05 7.45 -51.93 -0.39 0.67 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 1.28 7.62 -51.93 -0.40 0.89 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.40 6.55 8.31 -40.82 -0.34 6.21 16 38 H 0.22 1.21 7.53 -52.49 -0.40 0.82 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 42 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16 43 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.78 8.02 -51.93 -0.42 0.37 16 45 H 0.07 0.23 7.34 -51.93 -0.38 -0.15 16 46 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.09 2.79 6.11 -51.93 -0.32 2.47 16 49 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 397.67 15.07 5.99 5.99 Total: -1.00 -36.30 397.67 -9.71 -46.01 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -8.41 Total: 3.26 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: -2.27 Total: 9.92 kcal Atomic # 7 Polarization: -70.43 SS G_CDS: -0.09 Total: -70.52 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.09 Total: -12.66 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.03 Total: 18.00 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.30 -9.71 -46.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071821109.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.408 kcal (2) G-P(sol) polarization free energy of solvation -36.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 27.20 seconds