Wall clock time and date at job start Tue Mar 31 2020 23:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.58489 * 2 1 4 4 C 1.53195 * 109.58280 * 120.42533 * 2 1 3 5 5 C 1.53039 * 109.31344 * 174.42084 * 4 2 1 6 6 C 1.53039 * 109.53914 * 298.63611 * 5 4 2 7 7 H 1.08996 * 109.49562 * 301.41179 * 6 5 4 8 8 N 1.46499 * 109.52455 * 181.33205 * 6 5 4 9 9 C 1.34769 * 119.99933 * 155.14536 * 8 6 5 10 10 O 1.21560 * 120.00303 * 0.02562 * 9 8 6 11 11 C 1.47873 * 120.00174 * 179.97438 * 9 8 6 12 12 N 1.34550 * 126.04514 * 359.69086 * 11 9 8 13 13 C 1.30875 * 107.26871 * 179.86558 * 12 11 9 14 14 N 1.34580 * 107.62297 * 0.39126 * 13 12 11 15 15 C 1.46501 * 125.74774 * 179.72779 * 14 13 12 16 16 C 1.53000 * 109.47239 * 74.99896 * 15 14 13 17 17 C 1.53000 * 109.47356 * 194.99902 * 15 14 13 18 18 C 1.52999 * 109.47115 * 315.00209 * 15 14 13 19 19 N 1.28856 * 108.50864 * 359.74993 * 14 13 12 20 20 C 1.53192 * 109.31156 * 61.36127 * 6 5 4 21 21 N 1.46927 * 108.77872 * 305.36275 * 20 6 5 22 22 C 1.36928 * 120.63300 * 233.58728 * 21 20 6 23 23 H 1.08004 * 120.00160 * 150.86664 * 22 21 20 24 24 C 1.38809 * 120.00407 * 330.86657 * 22 21 20 25 25 N 1.31620 * 119.99787 * 343.81676 * 24 22 21 26 26 Si 1.86793 * 120.00361 * 163.81680 * 24 22 21 27 27 H 1.48504 * 109.47031 * 94.31122 * 26 24 22 28 28 H 1.48496 * 109.47382 * 214.30849 * 26 24 22 29 29 H 1.48497 * 109.47172 * 334.31467 * 26 24 22 30 30 H 1.08999 * 109.47361 * 180.28384 * 1 2 3 31 31 H 1.08999 * 109.47438 * 300.28980 * 1 2 3 32 32 H 1.09003 * 109.46782 * 60.28949 * 1 2 3 33 33 H 1.09002 * 109.49960 * 294.37559 * 4 2 1 34 34 H 1.09004 * 109.49605 * 54.46855 * 4 2 1 35 35 H 1.09001 * 109.46114 * 178.61333 * 5 4 2 36 36 H 1.09000 * 109.44758 * 58.64526 * 5 4 2 37 37 H 0.96994 * 119.99830 * 335.13859 * 8 6 5 38 38 H 1.08000 * 126.18602 * 180.15874 * 13 12 11 39 39 H 1.09003 * 109.46753 * 60.00164 * 16 15 14 40 40 H 1.09001 * 109.47433 * 179.97438 * 16 15 14 41 41 H 1.09006 * 109.46972 * 300.00404 * 16 15 14 42 42 H 1.09009 * 109.46797 * 59.99949 * 17 15 14 43 43 H 1.08995 * 109.47239 * 179.97438 * 17 15 14 44 44 H 1.08998 * 109.47198 * 300.00720 * 17 15 14 45 45 H 1.08998 * 109.47416 * 59.99510 * 18 15 14 46 46 H 1.08995 * 109.47334 * 179.97438 * 18 15 14 47 47 H 1.09002 * 109.46856 * 299.99680 * 18 15 14 48 48 H 1.09007 * 109.58736 * 185.57656 * 20 6 5 49 49 H 1.09002 * 109.70476 * 65.22585 * 20 6 5 50 50 H 0.96998 * 120.00378 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0434 -0.7309 1.2446 5 6 3.5674 -0.8495 1.1692 6 6 3.9568 -1.6657 -0.0653 7 1 3.4982 -2.6529 -0.0083 8 7 5.4141 -1.8060 -0.1198 9 6 5.9669 -2.8467 -0.7739 10 8 5.2563 -3.6686 -1.3191 11 6 7.4378 -2.9880 -0.8294 12 7 8.3350 -2.1506 -0.2779 13 6 9.5250 -2.6242 -0.5470 14 7 9.3626 -3.7472 -1.2707 15 6 10.4393 -4.5946 -1.7890 16 6 11.0402 -5.4130 -0.6445 17 6 9.8771 -5.5406 -2.8520 18 6 11.5254 -3.7152 -2.4120 19 7 8.1005 -3.9513 -1.4313 20 6 3.4650 -0.9454 -1.3247 21 7 2.0225 -0.6982 -1.1953 22 6 1.1538 -1.1101 -2.1703 23 1 0.1365 -1.3668 -1.9139 24 6 1.5805 -1.1978 -3.4883 25 7 2.6908 -0.5978 -3.8618 26 14 0.5790 -2.1674 -4.7317 27 1 -0.3431 -1.2499 -5.4480 28 1 1.4929 -2.8124 -5.7084 29 1 -0.2090 -3.2105 -4.0274 30 1 -0.3634 -1.0276 0.0051 31 1 -0.3634 0.5183 0.8873 32 1 -0.3633 0.5094 -0.8926 33 1 1.7659 -0.1695 2.1367 34 1 1.6028 -1.7269 1.2892 35 1 3.9376 -1.3475 2.0654 36 1 4.0058 0.1460 1.0995 37 1 5.9810 -1.1499 0.3148 38 1 10.4670 -2.1900 -0.2462 39 1 10.2664 -6.0395 -0.2006 40 1 11.8410 -6.0438 -1.0302 41 1 11.4407 -4.7390 0.1129 42 1 9.4490 -4.9574 -3.6675 43 1 10.6783 -6.1707 -3.2380 44 1 9.1033 -6.1670 -2.4082 45 1 11.9259 -3.0412 -1.6548 46 1 12.3267 -4.3456 -2.7973 47 1 11.0973 -3.1322 -3.2275 48 1 3.6518 -1.5692 -2.1990 49 1 3.9901 0.0035 -1.4341 50 1 2.9892 -0.6593 -4.7827 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071821109.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:00 Heat of formation + Delta-G solvation = 47.520309 kcal Electronic energy + Delta-G solvation = -29899.659644 eV Core-core repulsion = 25963.392391 eV Total energy + Delta-G solvation = -3936.267253 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 20.17 seconds Orbital eigenvalues (eV) -44.54677 -40.90573 -39.23500 -38.21305 -36.09725 -34.68274 -33.70143 -32.53444 -31.85442 -31.56476 -28.52307 -28.40265 -27.87340 -27.00479 -25.33798 -24.03370 -23.93891 -22.27684 -21.53739 -21.09869 -20.91662 -18.89588 -18.35038 -17.61895 -17.52504 -17.36434 -16.88119 -16.01617 -15.93374 -15.58723 -15.42793 -15.16592 -15.05271 -15.00625 -14.80627 -14.45676 -14.14285 -13.81007 -13.52094 -13.30829 -13.25857 -13.09814 -13.02297 -12.79257 -12.78314 -12.69569 -12.54489 -12.40348 -12.29502 -12.14505 -12.01868 -12.00575 -11.70312 -11.51011 -11.49037 -11.42891 -11.22084 -11.12375 -10.61326 -10.53235 -10.13536 -8.63311 -7.85687 -5.31183 0.32040 1.10531 1.17097 1.39054 1.44182 1.51811 2.00808 2.28111 2.50077 3.06776 3.25465 3.32359 3.65168 3.66935 3.75930 3.79208 3.88155 3.96843 4.09484 4.25707 4.38539 4.52517 4.57172 4.58083 4.60007 4.67809 4.72014 4.76818 4.79148 4.80682 4.89528 4.90482 5.02033 5.07833 5.09037 5.14777 5.18368 5.21623 5.27029 5.31517 5.35659 5.40842 5.56435 5.61485 5.69837 5.70751 5.77718 6.36932 6.44953 6.98483 7.12741 7.17573 7.89602 8.39470 9.19815 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014348 B = 0.003049 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.993283 B = 9181.438276 C =10556.916105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.152 3.848 3 H 0.023 0.977 4 C -0.116 4.116 5 C -0.107 4.107 6 C 0.132 3.868 7 H 0.056 0.944 8 N -0.685 5.685 9 C 0.604 3.396 10 O -0.568 6.568 11 C 0.117 3.883 12 N -0.501 5.501 13 C 0.202 3.798 14 N -0.288 5.288 15 C 0.155 3.845 16 C -0.153 4.153 17 C -0.151 4.151 18 C -0.156 4.156 19 N -0.277 5.277 20 C 0.181 3.819 21 N -0.602 5.602 22 C -0.249 4.249 23 H 0.077 0.923 24 C -0.056 4.056 25 N -0.935 5.935 26 Si 0.956 3.044 27 H -0.278 1.278 28 H -0.303 1.303 29 H -0.269 1.269 30 H 0.046 0.954 31 H 0.080 0.920 32 H 0.038 0.962 33 H 0.099 0.901 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.417 0.583 38 H 0.277 0.723 39 H 0.045 0.955 40 H 0.115 0.885 41 H 0.086 0.914 42 H 0.044 0.956 43 H 0.113 0.887 44 H 0.049 0.951 45 H 0.095 0.905 46 H 0.116 0.884 47 H 0.052 0.948 48 H 0.039 0.961 49 H -0.002 1.002 50 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.523 -4.787 11.712 25.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.047 3.953 3 H 0.041 0.959 4 C -0.156 4.156 5 C -0.145 4.145 6 C 0.026 3.974 7 H 0.074 0.926 8 N -0.336 5.336 9 C 0.387 3.613 10 O -0.444 6.444 11 C -0.162 4.162 12 N -0.227 5.227 13 C -0.092 4.092 14 N -0.085 5.085 15 C 0.075 3.925 16 C -0.211 4.211 17 C -0.208 4.208 18 C -0.213 4.213 19 N -0.117 5.117 20 C 0.054 3.946 21 N -0.326 5.326 22 C -0.379 4.379 23 H 0.095 0.905 24 C -0.251 4.251 25 N -0.581 5.581 26 Si 0.785 3.215 27 H -0.204 1.204 28 H -0.230 1.230 29 H -0.193 1.193 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.057 0.943 33 H 0.118 0.882 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.254 0.746 38 H 0.292 0.708 39 H 0.064 0.936 40 H 0.133 0.867 41 H 0.105 0.895 42 H 0.063 0.937 43 H 0.131 0.869 44 H 0.068 0.932 45 H 0.113 0.887 46 H 0.134 0.866 47 H 0.071 0.929 48 H 0.058 0.942 49 H 0.016 0.984 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 21.623 -5.587 11.020 24.904 hybrid contribution -0.173 -0.177 -1.332 1.355 sum 21.450 -5.764 9.688 24.232 Atomic orbital electron populations 1.21733 0.94564 1.01205 1.01130 1.20841 0.94440 0.93431 0.86603 0.95919 1.21956 0.94110 1.01043 0.98454 1.21657 0.97396 0.99948 0.95473 1.21669 0.77836 0.99600 0.98262 0.92571 1.45590 1.08138 1.26048 1.53834 1.16750 0.84072 0.81884 0.78595 1.90816 1.62639 1.44289 1.46659 1.23373 0.95530 0.93521 1.03746 1.71194 0.99313 1.28053 1.24124 1.27284 1.00035 0.87078 0.94801 1.48223 1.03868 1.20259 1.36116 1.21696 0.83512 0.90924 0.96321 1.22277 1.01759 1.00408 0.96667 1.22032 1.02496 0.99076 0.97241 1.22312 0.96836 1.00402 1.01782 1.74242 0.92534 1.24252 1.20678 1.20722 0.84036 0.95216 0.94656 1.44316 1.02302 1.65757 1.20238 1.19495 0.95262 1.36584 0.86607 0.90504 1.25821 0.99118 1.01072 0.99066 1.70182 1.25983 1.45682 1.16296 0.85412 0.77909 0.79023 0.79150 1.20418 1.22991 1.19338 0.93493 0.90124 0.94305 0.88229 0.92727 0.89537 0.90745 0.74618 0.70783 0.93611 0.86686 0.89527 0.93674 0.86885 0.93206 0.88665 0.86575 0.92911 0.94229 0.98396 0.94799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.76 7.94 71.98 0.57 -4.19 16 2 C 0.15 6.26 3.50 44.97 0.16 6.42 16 3 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 4 C -0.12 -3.79 5.37 30.67 0.16 -3.62 16 5 C -0.11 -3.44 5.36 30.62 0.16 -3.27 16 6 C 0.13 5.65 2.60 45.07 0.12 5.77 16 7 H 0.06 2.73 7.58 -2.39 -0.02 2.71 16 8 N -0.68 -26.77 5.08 -445.02 -2.26 -29.03 16 9 C 0.60 26.83 7.80 86.80 0.68 27.51 16 10 O -0.57 -30.74 16.75 -3.90 -0.07 -30.81 16 11 C 0.12 4.36 7.96 137.13 1.09 5.45 16 12 N -0.50 -14.49 11.09 -193.03 -2.14 -16.63 16 13 C 0.20 3.87 11.71 180.30 2.11 5.98 16 14 N -0.29 -6.43 3.17 -311.59 -0.99 -7.42 16 15 C 0.16 2.00 1.23 3.60 0.00 2.00 16 16 C -0.15 -1.16 8.72 71.98 0.63 -0.53 16 17 C -0.15 -2.47 8.04 71.98 0.58 -1.89 16 18 C -0.16 -0.92 8.28 71.98 0.60 -0.32 16 19 N -0.28 -9.55 11.09 -52.43 -0.58 -10.13 16 20 C 0.18 9.70 4.87 86.36 0.42 10.12 16 21 N -0.60 -31.86 2.99 -675.22 -2.02 -33.87 16 22 C -0.25 -14.46 8.59 84.03 0.72 -13.74 16 23 H 0.08 4.26 6.22 -2.91 -0.02 4.25 16 24 C -0.06 -3.40 4.93 84.86 0.42 -2.99 16 25 N -0.93 -60.66 11.22 21.65 0.24 -60.42 16 26 Si 0.96 49.37 29.58 68.60 2.03 51.40 16 27 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 28 H -0.30 -16.12 7.11 99.48 0.71 -15.41 16 29 H -0.27 -13.27 7.11 99.48 0.71 -12.56 16 30 H 0.05 1.77 7.45 -2.39 -0.02 1.76 16 31 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.04 1.58 7.62 -2.39 -0.02 1.56 16 33 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 35 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.42 13.62 8.31 -92.71 -0.77 12.85 16 38 H 0.28 1.58 7.53 -2.91 -0.02 1.56 16 39 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 41 H 0.09 0.36 8.14 -2.38 -0.02 0.34 16 42 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 43 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.05 1.08 8.02 -2.39 -0.02 1.06 16 45 H 0.09 0.11 7.34 -2.39 -0.02 0.09 16 46 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 47 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 48 H 0.04 2.54 6.11 -2.38 -0.01 2.53 16 49 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 50 H 0.24 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -89.43 397.67 2.80 -86.62 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.16 Total: 17.59 kcal Atomic # 6 Polarization: 24.27 SS G_CDS: 8.42 Total: 32.69 kcal Atomic # 7 Polarization: -149.75 SS G_CDS: -7.74 Total: -157.50 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -0.07 Total: -30.81 kcal Atomic # 14 Polarization: 49.37 SS G_CDS: 2.03 Total: 51.40 kcal Total: -89.43 2.80 -86.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071821109.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.142 kcal (2) G-P(sol) polarization free energy of solvation -89.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 20.17 seconds