Wall clock time and date at job start Tue Mar 31 2020 23:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.69907 * 2 1 4 4 C 1.53188 * 109.59004 * 239.64566 * 2 1 3 5 5 C 1.53036 * 109.31430 * 185.57816 * 4 2 1 6 6 C 1.53039 * 109.54168 * 61.36040 * 5 4 2 7 7 H 1.08999 * 109.49629 * 58.58811 * 6 5 4 8 8 N 1.46505 * 109.52535 * 178.66792 * 6 5 4 9 9 C 1.34778 * 119.99687 * 204.91815 * 8 6 5 10 10 O 1.21549 * 120.00031 * 0.02562 * 9 8 6 11 11 C 1.47872 * 119.99913 * 179.97438 * 9 8 6 12 12 N 1.34556 * 126.04515 * 359.69134 * 11 9 8 13 13 C 1.30863 * 107.26926 * 179.87062 * 12 11 9 14 14 N 1.34588 * 107.62375 * 0.38967 * 13 12 11 15 15 C 1.46500 * 125.74874 * 179.73056 * 14 13 12 16 16 C 1.53007 * 109.46917 * 75.00140 * 15 14 13 17 17 C 1.52997 * 109.47011 * 194.99849 * 15 14 13 18 18 C 1.52994 * 109.47181 * 315.00305 * 15 14 13 19 19 N 1.28847 * 108.50493 * 359.75226 * 14 13 12 20 20 C 1.53189 * 109.31201 * 298.63674 * 6 5 4 21 21 N 1.46921 * 108.77680 * 54.63464 * 20 6 5 22 22 C 1.36941 * 120.63463 * 126.36730 * 21 20 6 23 23 H 1.08003 * 120.00087 * 209.03032 * 22 21 20 24 24 C 1.38812 * 119.99488 * 29.02901 * 22 21 20 25 25 N 1.31614 * 120.00311 * 15.01771 * 24 22 21 26 26 Si 1.86810 * 119.99778 * 195.02001 * 24 22 21 27 27 H 1.48500 * 109.47016 * 60.00020 * 26 24 22 28 28 H 1.48491 * 109.47071 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47062 * 300.00184 * 26 24 22 30 30 H 1.08998 * 109.47082 * 299.64193 * 1 2 3 31 31 H 1.08994 * 109.47384 * 59.64754 * 1 2 3 32 32 H 1.09005 * 109.46686 * 179.64940 * 1 2 3 33 33 H 1.09005 * 109.49439 * 305.52865 * 4 2 1 34 34 H 1.08992 * 109.50068 * 65.58781 * 4 2 1 35 35 H 1.09001 * 109.46012 * 301.34030 * 5 4 2 36 36 H 1.09004 * 109.46183 * 181.38592 * 5 4 2 37 37 H 0.96993 * 119.99727 * 24.92142 * 8 6 5 38 38 H 1.07998 * 126.19007 * 180.16828 * 13 12 11 39 39 H 1.09003 * 109.47097 * 60.00160 * 16 15 14 40 40 H 1.09001 * 109.46706 * 179.97438 * 16 15 14 41 41 H 1.08996 * 109.46811 * 299.99845 * 16 15 14 42 42 H 1.08998 * 109.47148 * 60.00610 * 17 15 14 43 43 H 1.09010 * 109.47295 * 180.02562 * 17 15 14 44 44 H 1.08993 * 109.47516 * 300.00279 * 17 15 14 45 45 H 1.08996 * 109.47622 * 60.00109 * 18 15 14 46 46 H 1.08998 * 109.47524 * 179.97438 * 18 15 14 47 47 H 1.08998 * 109.47205 * 299.99529 * 18 15 14 48 48 H 1.09007 * 109.58506 * 174.41795 * 20 6 5 49 49 H 1.08992 * 109.58640 * 294.69947 * 20 6 5 50 50 H 0.97008 * 119.99860 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0436 -0.7293 -1.2454 5 6 3.5675 -0.8479 -1.1701 6 6 3.9570 -1.6655 0.0636 7 1 3.4984 -2.6527 0.0054 8 7 5.4143 -1.8058 0.1180 9 6 5.9671 -2.8479 0.7699 10 8 5.2565 -3.6716 1.3122 11 6 7.4380 -2.9898 0.8243 12 7 8.3349 -2.1579 0.2640 13 6 9.5251 -2.6268 0.5402 14 7 9.3627 -3.7508 1.2623 15 6 10.4395 -4.6002 1.7775 16 6 11.0972 -3.9176 2.9786 17 6 9.8620 -5.9492 2.2107 18 6 11.4838 -4.8208 0.6814 19 7 8.1007 -3.9544 1.4239 20 6 3.4651 -0.9467 1.3238 21 7 2.0226 -0.6994 1.1945 22 6 1.1537 -1.1134 2.1686 23 1 0.1360 -1.3681 1.9117 24 6 1.5809 -1.2056 3.4861 25 7 2.7039 -0.6274 3.8559 26 14 0.5618 -2.1507 4.7344 27 1 0.4327 -3.5646 4.2993 28 1 1.2299 -2.0992 6.0595 29 1 -0.7875 -1.5391 4.8367 30 1 -0.3633 0.5083 0.8932 31 1 -0.3634 0.5193 -0.8867 32 1 -0.3633 -1.0277 -0.0063 33 1 1.6030 -1.7253 -1.2913 34 1 1.7656 -0.1672 -2.1368 35 1 4.0061 0.1475 -1.0993 36 1 3.9379 -1.3447 -2.0668 37 1 5.9812 -1.1486 -0.3151 38 1 10.4671 -2.1924 0.2397 39 1 10.3531 -3.7604 3.7595 40 1 11.8980 -4.5498 3.3621 41 1 11.5085 -2.9566 2.6699 42 1 9.3935 -6.4355 1.3551 43 1 10.6631 -6.5810 2.5945 44 1 9.1180 -5.7920 2.9916 45 1 11.8952 -3.8598 0.3727 46 1 12.2851 -5.4524 1.0647 47 1 11.0153 -5.3071 -0.1743 48 1 3.6519 -1.5716 2.1972 49 1 3.9921 0.0010 1.4331 50 1 3.0022 -0.6916 4.7767 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071821110.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:04 Heat of formation + Delta-G solvation = 72.619847 kcal Electronic energy + Delta-G solvation = -29899.069118 eV Core-core repulsion = 25963.890263 eV Total energy + Delta-G solvation = -3935.178856 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 4.31 seconds Orbital eigenvalues (eV) -43.48873 -39.24488 -37.71315 -37.27201 -34.33477 -32.82012 -32.56827 -31.18841 -30.35687 -29.72408 -28.02570 -27.87487 -26.21210 -25.10196 -23.95538 -23.03636 -22.15142 -20.74337 -20.21542 -19.90007 -19.20266 -17.70209 -16.60239 -16.53190 -16.32047 -15.65180 -15.20517 -14.66508 -14.60061 -14.54005 -13.96423 -13.79729 -13.68919 -13.42641 -13.27354 -13.16828 -12.91382 -12.77920 -12.62205 -12.29632 -12.28908 -12.12668 -11.79599 -11.76496 -11.40797 -11.36932 -11.03844 -10.81059 -10.62112 -10.44474 -10.40469 -10.36351 -10.32455 -10.18729 -9.90262 -9.78872 -9.49249 -9.43485 -9.35858 -8.42857 -8.32035 -6.52233 -5.64584 -3.09192 1.54453 2.04266 2.21017 3.39349 3.49442 3.55178 3.57351 3.77349 3.92777 4.16397 4.19447 4.28355 4.60898 4.64903 4.88777 4.90593 5.05538 5.10407 5.20502 5.24483 5.33446 5.43711 5.44473 5.46738 5.57991 5.64505 5.66806 5.78472 5.85676 6.05020 6.08066 6.21358 6.34398 6.35948 6.39266 6.47463 6.50433 6.53784 6.59536 6.71826 6.84008 7.02647 7.12595 7.21067 7.42138 7.85519 7.88398 7.95272 8.19854 8.59062 8.69641 9.33663 9.98277 10.53467 11.43287 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014367 B = 0.003046 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.410189 B = 9190.208126 C =10567.618044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.118 3.882 7 H 0.083 0.917 8 N -0.699 5.699 9 C 0.609 3.391 10 O -0.512 6.512 11 C 0.149 3.851 12 N -0.484 5.484 13 C 0.184 3.816 14 N -0.296 5.296 15 C 0.167 3.833 16 C -0.160 4.160 17 C -0.149 4.149 18 C -0.159 4.159 19 N -0.249 5.249 20 C 0.167 3.833 21 N -0.583 5.583 22 C -0.253 4.253 23 H 0.070 0.930 24 C 0.006 3.994 25 N -0.900 5.900 26 Si 0.901 3.099 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.284 1.284 30 H 0.061 0.939 31 H 0.037 0.963 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.402 0.598 38 H 0.219 0.781 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.069 0.931 46 H 0.087 0.913 47 H 0.069 0.931 48 H 0.095 0.905 49 H 0.018 0.982 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.088 -5.134 -8.958 22.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.165 4.165 5 C -0.154 4.154 6 C 0.013 3.987 7 H 0.102 0.898 8 N -0.350 5.350 9 C 0.390 3.610 10 O -0.383 6.383 11 C -0.132 4.132 12 N -0.210 5.210 13 C -0.112 4.112 14 N -0.093 5.093 15 C 0.085 3.915 16 C -0.219 4.219 17 C -0.207 4.207 18 C -0.217 4.217 19 N -0.087 5.087 20 C 0.040 3.960 21 N -0.306 5.306 22 C -0.382 4.382 23 H 0.088 0.912 24 C -0.193 4.193 25 N -0.544 5.544 26 Si 0.730 3.270 27 H -0.209 1.209 28 H -0.217 1.217 29 H -0.210 1.210 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.236 0.764 38 H 0.235 0.765 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.088 0.912 46 H 0.106 0.894 47 H 0.088 0.912 48 H 0.114 0.886 49 H 0.036 0.964 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 19.178 -5.964 -8.217 21.700 hybrid contribution 0.417 -0.020 0.499 0.651 sum 19.595 -5.985 -7.717 21.893 Atomic orbital electron populations 1.21800 0.96028 1.01357 1.00182 1.20496 0.93023 0.93601 0.87086 0.95710 1.22047 0.94272 1.01326 0.98903 1.21674 0.97331 0.99761 0.96633 1.22065 0.76997 1.01077 0.98534 0.89845 1.45767 1.08690 1.26022 1.54505 1.16269 0.82578 0.82466 0.79717 1.90864 1.60786 1.42246 1.44453 1.24003 0.96673 0.91659 1.00831 1.71272 0.98429 1.28073 1.23201 1.26253 0.99428 0.88436 0.97055 1.47762 1.04802 1.19580 1.37143 1.21126 0.84128 0.91099 0.95130 1.22272 1.01542 1.01320 0.96728 1.21998 1.01976 0.93251 1.03464 1.22249 0.98019 1.03506 0.97928 1.74323 0.90123 1.23756 1.20450 1.21098 0.83500 0.97057 0.94326 1.44014 1.02603 1.64734 1.19288 1.19097 0.94680 1.38319 0.86138 0.91240 1.25071 0.97708 0.99476 0.97028 1.69988 1.23271 1.44313 1.16851 0.86401 0.79408 0.80440 0.80701 1.20908 1.21744 1.20998 0.92007 0.94375 0.92808 0.92056 0.92647 0.92116 0.92964 0.76396 0.76460 0.91077 0.89683 0.91356 0.91270 0.90421 0.90367 0.91172 0.89422 0.91180 0.88640 0.96361 0.93727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 7.94 37.16 0.30 -2.33 16 2 C 0.16 3.47 3.50 -67.60 -0.24 3.24 16 3 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.13 -2.22 5.37 -26.62 -0.14 -2.36 16 5 C -0.12 -1.99 5.36 -26.69 -0.14 -2.13 16 6 C 0.12 2.46 2.60 -67.81 -0.18 2.29 16 7 H 0.08 1.94 7.58 -51.93 -0.39 1.54 16 8 N -0.70 -13.21 5.08 -54.62 -0.28 -13.49 16 9 C 0.61 12.72 7.80 -12.32 -0.10 12.62 16 10 O -0.51 -12.77 16.75 5.32 0.09 -12.68 16 11 C 0.15 2.67 7.96 -156.35 -1.24 1.42 16 12 N -0.48 -7.20 11.09 -12.36 -0.14 -7.34 16 13 C 0.18 1.99 11.71 -90.49 -1.06 0.93 16 14 N -0.30 -3.45 3.17 -49.84 -0.16 -3.61 16 15 C 0.17 1.25 1.23 -131.82 -0.16 1.09 16 16 C -0.16 -0.96 8.72 37.16 0.32 -0.64 16 17 C -0.15 -1.20 8.04 37.16 0.30 -0.90 16 18 C -0.16 -0.69 8.28 37.15 0.31 -0.38 16 19 N -0.25 -4.12 11.09 32.08 0.36 -3.77 16 20 C 0.17 4.25 4.86 -3.71 -0.02 4.23 16 21 N -0.58 -14.99 2.99 -164.78 -0.49 -15.49 16 22 C -0.25 -7.11 8.60 -15.06 -0.13 -7.24 16 23 H 0.07 1.89 6.21 -52.48 -0.33 1.57 16 24 C 0.01 0.18 4.96 -17.43 -0.09 0.09 16 25 N -0.90 -27.52 11.14 55.49 0.62 -26.90 16 26 Si 0.90 23.03 29.58 -169.99 -5.03 18.00 16 27 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 28 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 29 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 30 H 0.06 1.28 7.62 -51.93 -0.40 0.89 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 1.05 7.44 -51.93 -0.39 0.66 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.40 6.57 8.31 -40.82 -0.34 6.23 16 38 H 0.22 1.22 7.53 -52.49 -0.40 0.82 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.08 0.40 8.14 -51.92 -0.42 -0.03 16 44 H 0.08 0.81 8.02 -51.93 -0.42 0.40 16 45 H 0.07 0.21 7.34 -51.93 -0.38 -0.17 16 46 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 47 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.10 2.86 6.06 -51.93 -0.31 2.54 16 49 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 50 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 397.55 15.07 5.99 5.99 Total: -1.00 -36.24 397.55 -9.71 -45.96 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -8.40 Total: 3.41 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: -2.27 Total: 9.92 kcal Atomic # 7 Polarization: -70.50 SS G_CDS: -0.09 Total: -70.59 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.09 Total: -12.68 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.03 Total: 18.00 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.24 -9.71 -45.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071821110.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.575 kcal (2) G-P(sol) polarization free energy of solvation -36.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.32 seconds