Wall clock time and date at job start Tue Mar 31 2020 23:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.69907 * 2 1 4 4 C 1.53188 * 109.59004 * 239.64566 * 2 1 3 5 5 C 1.53036 * 109.31430 * 185.57816 * 4 2 1 6 6 C 1.53039 * 109.54168 * 61.36040 * 5 4 2 7 7 H 1.08999 * 109.49629 * 58.58811 * 6 5 4 8 8 N 1.46505 * 109.52535 * 178.66792 * 6 5 4 9 9 C 1.34778 * 119.99687 * 204.91815 * 8 6 5 10 10 O 1.21549 * 120.00031 * 0.02562 * 9 8 6 11 11 C 1.47872 * 119.99913 * 179.97438 * 9 8 6 12 12 N 1.34556 * 126.04515 * 359.69134 * 11 9 8 13 13 C 1.30863 * 107.26926 * 179.87062 * 12 11 9 14 14 N 1.34588 * 107.62375 * 0.38967 * 13 12 11 15 15 C 1.46500 * 125.74874 * 179.73056 * 14 13 12 16 16 C 1.53007 * 109.46917 * 75.00140 * 15 14 13 17 17 C 1.52997 * 109.47011 * 194.99849 * 15 14 13 18 18 C 1.52994 * 109.47181 * 315.00305 * 15 14 13 19 19 N 1.28847 * 108.50493 * 359.75226 * 14 13 12 20 20 C 1.53189 * 109.31201 * 298.63674 * 6 5 4 21 21 N 1.46921 * 108.77680 * 54.63464 * 20 6 5 22 22 C 1.36941 * 120.63463 * 126.36730 * 21 20 6 23 23 H 1.08003 * 120.00087 * 209.03032 * 22 21 20 24 24 C 1.38812 * 119.99488 * 29.02901 * 22 21 20 25 25 N 1.31614 * 120.00311 * 15.01771 * 24 22 21 26 26 Si 1.86810 * 119.99778 * 195.02001 * 24 22 21 27 27 H 1.48500 * 109.47016 * 60.00020 * 26 24 22 28 28 H 1.48491 * 109.47071 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47062 * 300.00184 * 26 24 22 30 30 H 1.08998 * 109.47082 * 299.64193 * 1 2 3 31 31 H 1.08994 * 109.47384 * 59.64754 * 1 2 3 32 32 H 1.09005 * 109.46686 * 179.64940 * 1 2 3 33 33 H 1.09005 * 109.49439 * 305.52865 * 4 2 1 34 34 H 1.08992 * 109.50068 * 65.58781 * 4 2 1 35 35 H 1.09001 * 109.46012 * 301.34030 * 5 4 2 36 36 H 1.09004 * 109.46183 * 181.38592 * 5 4 2 37 37 H 0.96993 * 119.99727 * 24.92142 * 8 6 5 38 38 H 1.07998 * 126.19007 * 180.16828 * 13 12 11 39 39 H 1.09003 * 109.47097 * 60.00160 * 16 15 14 40 40 H 1.09001 * 109.46706 * 179.97438 * 16 15 14 41 41 H 1.08996 * 109.46811 * 299.99845 * 16 15 14 42 42 H 1.08998 * 109.47148 * 60.00610 * 17 15 14 43 43 H 1.09010 * 109.47295 * 180.02562 * 17 15 14 44 44 H 1.08993 * 109.47516 * 300.00279 * 17 15 14 45 45 H 1.08996 * 109.47622 * 60.00109 * 18 15 14 46 46 H 1.08998 * 109.47524 * 179.97438 * 18 15 14 47 47 H 1.08998 * 109.47205 * 299.99529 * 18 15 14 48 48 H 1.09007 * 109.58506 * 174.41795 * 20 6 5 49 49 H 1.08992 * 109.58640 * 294.69947 * 20 6 5 50 50 H 0.97008 * 119.99860 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0436 -0.7293 -1.2454 5 6 3.5675 -0.8479 -1.1701 6 6 3.9570 -1.6655 0.0636 7 1 3.4984 -2.6527 0.0054 8 7 5.4143 -1.8058 0.1180 9 6 5.9671 -2.8479 0.7699 10 8 5.2565 -3.6716 1.3122 11 6 7.4380 -2.9898 0.8243 12 7 8.3349 -2.1579 0.2640 13 6 9.5251 -2.6268 0.5402 14 7 9.3627 -3.7508 1.2623 15 6 10.4395 -4.6002 1.7775 16 6 11.0972 -3.9176 2.9786 17 6 9.8620 -5.9492 2.2107 18 6 11.4838 -4.8208 0.6814 19 7 8.1007 -3.9544 1.4239 20 6 3.4651 -0.9467 1.3238 21 7 2.0226 -0.6994 1.1945 22 6 1.1537 -1.1134 2.1686 23 1 0.1360 -1.3681 1.9117 24 6 1.5809 -1.2056 3.4861 25 7 2.7039 -0.6274 3.8559 26 14 0.5618 -2.1507 4.7344 27 1 0.4327 -3.5646 4.2993 28 1 1.2299 -2.0992 6.0595 29 1 -0.7875 -1.5391 4.8367 30 1 -0.3633 0.5083 0.8932 31 1 -0.3634 0.5193 -0.8867 32 1 -0.3633 -1.0277 -0.0063 33 1 1.6030 -1.7253 -1.2913 34 1 1.7656 -0.1672 -2.1368 35 1 4.0061 0.1475 -1.0993 36 1 3.9379 -1.3447 -2.0668 37 1 5.9812 -1.1486 -0.3151 38 1 10.4671 -2.1924 0.2397 39 1 10.3531 -3.7604 3.7595 40 1 11.8980 -4.5498 3.3621 41 1 11.5085 -2.9566 2.6699 42 1 9.3935 -6.4355 1.3551 43 1 10.6631 -6.5810 2.5945 44 1 9.1180 -5.7920 2.9916 45 1 11.8952 -3.8598 0.3727 46 1 12.2851 -5.4524 1.0647 47 1 11.0153 -5.3071 -0.1743 48 1 3.6519 -1.5716 2.1972 49 1 3.9921 0.0010 1.4331 50 1 3.0022 -0.6916 4.7767 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071821110.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:58 Heat of formation + Delta-G solvation = 47.789736 kcal Electronic energy + Delta-G solvation = -29900.145833 eV Core-core repulsion = 25963.890263 eV Total energy + Delta-G solvation = -3936.255570 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 12.28 seconds Orbital eigenvalues (eV) -44.54711 -40.90399 -39.23448 -38.21215 -36.09493 -34.68454 -33.70169 -32.53355 -31.84842 -31.55876 -28.51606 -28.40942 -27.87205 -27.00477 -25.33585 -24.03084 -23.93366 -22.27596 -21.53531 -21.09784 -20.91592 -18.89464 -18.34793 -17.62222 -17.52198 -17.35742 -16.89302 -15.96266 -15.95134 -15.64112 -15.40651 -15.16480 -15.05118 -14.94938 -14.85170 -14.44294 -14.13412 -13.81037 -13.52572 -13.31494 -13.24804 -13.07858 -13.02259 -12.78413 -12.76995 -12.70170 -12.56510 -12.40107 -12.29838 -12.13774 -12.01859 -12.00526 -11.69700 -11.50890 -11.48484 -11.43351 -11.22132 -11.12707 -10.61330 -10.52742 -10.13335 -8.62943 -7.84790 -5.31118 0.32179 1.10898 1.16975 1.39606 1.46145 1.49893 2.01233 2.28138 2.50381 3.06925 3.26071 3.32910 3.64993 3.67150 3.76100 3.79355 3.88246 3.97026 4.09459 4.25992 4.38535 4.53160 4.56320 4.58721 4.60231 4.67489 4.72039 4.77203 4.79256 4.80868 4.89587 4.90600 5.02044 5.07811 5.08994 5.15264 5.18514 5.21372 5.27201 5.31606 5.36101 5.41412 5.56529 5.62055 5.69815 5.70685 5.78660 6.37177 6.45346 6.98684 7.13066 7.17923 7.89960 8.39541 9.20299 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014367 B = 0.003046 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.410189 B = 9190.208126 C =10567.618044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.152 3.848 3 H 0.023 0.977 4 C -0.117 4.117 5 C -0.107 4.107 6 C 0.132 3.868 7 H 0.055 0.945 8 N -0.685 5.685 9 C 0.604 3.396 10 O -0.568 6.568 11 C 0.117 3.883 12 N -0.501 5.501 13 C 0.202 3.798 14 N -0.288 5.288 15 C 0.155 3.845 16 C -0.157 4.157 17 C -0.150 4.150 18 C -0.153 4.153 19 N -0.276 5.276 20 C 0.180 3.820 21 N -0.602 5.602 22 C -0.250 4.250 23 H 0.078 0.922 24 C -0.056 4.056 25 N -0.935 5.935 26 Si 0.958 3.042 27 H -0.286 1.286 28 H -0.298 1.298 29 H -0.265 1.265 30 H 0.038 0.962 31 H 0.080 0.920 32 H 0.046 0.954 33 H 0.054 0.946 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.416 0.584 38 H 0.277 0.723 39 H 0.039 0.961 40 H 0.116 0.884 41 H 0.084 0.916 42 H 0.052 0.948 43 H 0.112 0.888 44 H 0.044 0.956 45 H 0.093 0.907 46 H 0.115 0.885 47 H 0.058 0.942 48 H 0.042 0.958 49 H -0.002 1.002 50 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.468 -4.659 -11.626 25.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.047 3.953 3 H 0.041 0.959 4 C -0.156 4.156 5 C -0.145 4.145 6 C 0.026 3.974 7 H 0.074 0.926 8 N -0.336 5.336 9 C 0.387 3.613 10 O -0.444 6.444 11 C -0.162 4.162 12 N -0.227 5.227 13 C -0.092 4.092 14 N -0.085 5.085 15 C 0.075 3.925 16 C -0.215 4.215 17 C -0.207 4.207 18 C -0.211 4.211 19 N -0.117 5.117 20 C 0.053 3.947 21 N -0.326 5.326 22 C -0.381 4.381 23 H 0.095 0.905 24 C -0.251 4.251 25 N -0.582 5.582 26 Si 0.786 3.214 27 H -0.212 1.212 28 H -0.225 1.225 29 H -0.190 1.190 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.118 0.882 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.254 0.746 38 H 0.292 0.708 39 H 0.058 0.942 40 H 0.134 0.866 41 H 0.103 0.897 42 H 0.071 0.929 43 H 0.131 0.869 44 H 0.063 0.937 45 H 0.112 0.888 46 H 0.134 0.866 47 H 0.077 0.923 48 H 0.060 0.940 49 H 0.016 0.984 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 21.571 -5.459 -10.939 24.794 hybrid contribution -0.187 -0.187 1.316 1.342 sum 21.384 -5.647 -9.623 24.119 Atomic orbital electron populations 1.21730 0.94544 1.01214 1.01134 1.20840 0.94433 0.93435 0.86593 0.95897 1.21958 0.94110 1.01046 0.98480 1.21655 0.97395 0.99936 0.95486 1.21678 0.77837 0.99576 0.98316 0.92646 1.45593 1.08136 1.25931 1.53954 1.16749 0.84071 0.81901 0.78578 1.90814 1.62633 1.44230 1.46725 1.23371 0.95531 0.93662 1.03601 1.71190 0.99314 1.28262 1.23913 1.27283 1.00029 0.87202 0.94685 1.48223 1.03862 1.20159 1.36225 1.21697 0.83580 0.90036 0.97142 1.22304 1.01340 1.02781 0.95062 1.22023 1.02333 0.94573 1.01820 1.22291 0.97237 1.05344 0.96181 1.74236 0.92546 1.24126 1.20787 1.20735 0.83996 0.95265 0.94707 1.44308 1.02294 1.65645 1.20365 1.19479 0.95219 1.36682 0.86682 0.90472 1.25834 0.99047 1.01110 0.99102 1.70168 1.25167 1.46439 1.16408 0.85473 0.78781 0.78942 0.78162 1.21246 1.22463 1.19009 0.94297 0.90123 0.93482 0.92762 0.88236 0.90744 0.89581 0.74629 0.70788 0.94178 0.86577 0.89685 0.92929 0.86929 0.93700 0.88815 0.86649 0.92279 0.93996 0.98426 0.94792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.76 7.94 71.98 0.57 -4.19 16 2 C 0.15 6.27 3.50 44.97 0.16 6.43 16 3 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 4 C -0.12 -3.81 5.37 30.67 0.16 -3.64 16 5 C -0.11 -3.45 5.36 30.62 0.16 -3.29 16 6 C 0.13 5.65 2.60 45.07 0.12 5.77 16 7 H 0.06 2.71 7.58 -2.39 -0.02 2.69 16 8 N -0.68 -26.85 5.08 -445.01 -2.26 -29.11 16 9 C 0.60 26.90 7.80 86.79 0.68 27.58 16 10 O -0.57 -30.82 16.75 -3.87 -0.06 -30.89 16 11 C 0.12 4.37 7.96 137.13 1.09 5.46 16 12 N -0.50 -14.51 11.09 -193.03 -2.14 -16.65 16 13 C 0.20 3.88 11.71 180.30 2.11 5.99 16 14 N -0.29 -6.44 3.17 -311.59 -0.99 -7.42 16 15 C 0.16 2.00 1.23 3.60 0.00 2.01 16 16 C -0.16 -1.48 8.72 71.98 0.63 -0.85 16 17 C -0.15 -2.37 8.04 71.98 0.58 -1.79 16 18 C -0.15 -0.71 8.28 71.98 0.60 -0.11 16 19 N -0.28 -9.56 11.09 -52.43 -0.58 -10.14 16 20 C 0.18 9.67 4.86 86.36 0.42 10.09 16 21 N -0.60 -31.88 2.99 -675.24 -2.02 -33.90 16 22 C -0.25 -14.53 8.60 84.03 0.72 -13.81 16 23 H 0.08 4.27 6.21 -2.91 -0.02 4.26 16 24 C -0.06 -3.41 4.96 84.86 0.42 -2.99 16 25 N -0.94 -60.66 11.14 21.65 0.24 -60.42 16 26 Si 0.96 49.33 29.58 68.60 2.03 51.36 16 27 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 28 H -0.30 -15.53 7.11 99.48 0.71 -14.83 16 29 H -0.26 -12.70 7.11 99.48 0.71 -11.99 16 30 H 0.04 1.58 7.62 -2.39 -0.02 1.57 16 31 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.05 1.78 7.44 -2.38 -0.02 1.76 16 33 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.42 13.66 8.31 -92.71 -0.77 12.89 16 38 H 0.28 1.59 7.53 -2.91 -0.02 1.57 16 39 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 44 H 0.04 1.00 8.02 -2.39 -0.02 0.98 16 45 H 0.09 0.03 7.34 -2.39 -0.02 0.01 16 46 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 47 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 48 H 0.04 2.70 6.06 -2.38 -0.01 2.68 16 49 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 50 H 0.24 15.53 8.31 -92.70 -0.77 14.76 16 Total: -1.00 -89.33 397.55 2.80 -86.53 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 0.16 Total: 17.99 kcal Atomic # 6 Polarization: 24.23 SS G_CDS: 8.43 Total: 32.65 kcal Atomic # 7 Polarization: -149.90 SS G_CDS: -7.75 Total: -157.65 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -0.06 Total: -30.89 kcal Atomic # 14 Polarization: 49.33 SS G_CDS: 2.03 Total: 51.36 kcal Total: -89.33 2.80 -86.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071821110.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.320 kcal (2) G-P(sol) polarization free energy of solvation -89.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.28 seconds