Wall clock time and date at job start Wed Apr 1 2020 01:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.91638 * 2 1 4 4 C 1.55118 * 111.16527 * 236.07128 * 2 1 3 5 5 N 1.47429 * 104.94347 * 205.13107 * 4 2 1 6 6 C 1.36942 * 125.64752 * 204.03457 * 5 4 2 7 7 H 1.07994 * 119.99949 * 359.97438 * 6 5 4 8 8 C 1.38812 * 119.99845 * 179.97438 * 6 5 4 9 9 N 1.31618 * 119.99832 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99850 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.46979 * 60.00146 * 10 8 6 12 12 H 1.48497 * 109.46760 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47062 * 300.00152 * 10 8 6 14 14 C 1.47015 * 108.70230 * 24.00785 * 5 4 2 15 15 C 1.54324 * 107.27539 * 358.93611 * 14 5 4 16 16 H 1.08999 * 110.71979 * 96.34416 * 15 14 5 17 17 N 1.46496 * 110.72501 * 219.45009 * 15 14 5 18 18 C 1.34779 * 119.99458 * 271.15358 * 17 15 14 19 19 O 1.21567 * 120.00625 * 0.02562 * 18 17 15 20 20 C 1.47718 * 119.99692 * 179.97438 * 18 17 15 21 21 C 1.41500 * 126.51829 * 180.02562 * 20 18 17 22 22 C 1.35362 * 105.50194 * 180.24377 * 21 20 18 23 23 N 1.35035 * 107.23133 * 359.61771 * 22 21 20 24 24 C 1.46501 * 124.88903 * 180.15382 * 23 22 21 25 25 C 1.52999 * 109.47086 * 125.25923 * 24 23 22 26 26 N 1.46901 * 109.46807 * 180.02562 * 25 24 23 27 27 C 1.46901 * 111.00125 * 66.04784 * 26 25 24 28 28 C 1.46907 * 110.99713 * 189.99677 * 26 25 24 29 29 N 1.28475 * 110.22701 * 0.40464 * 23 22 21 30 30 H 1.09000 * 109.47484 * 296.09676 * 1 2 3 31 31 H 1.08998 * 109.47023 * 56.10200 * 1 2 3 32 32 H 1.09003 * 109.47048 * 176.09745 * 1 2 3 33 33 H 1.09002 * 110.42058 * 86.20156 * 4 2 1 34 34 H 1.09003 * 110.30403 * 324.00180 * 4 2 1 35 35 H 0.96997 * 119.99875 * 179.97438 * 9 8 6 36 36 H 1.09002 * 109.88007 * 239.52234 * 14 5 4 37 37 H 1.08995 * 110.01769 * 118.43119 * 14 5 4 38 38 H 0.97001 * 120.00362 * 91.15680 * 17 15 14 39 39 H 1.08002 * 127.24541 * 359.97396 * 21 20 18 40 40 H 1.08000 * 126.38250 * 179.74343 * 22 21 20 41 41 H 1.09001 * 109.46803 * 245.26159 * 24 23 22 42 42 H 1.09000 * 109.46417 * 5.26029 * 24 23 22 43 43 H 1.09006 * 109.47072 * 299.99995 * 25 24 23 44 44 H 1.08997 * 109.47133 * 60.00262 * 25 24 23 45 45 H 1.09003 * 109.47157 * 59.99434 * 27 26 25 46 46 H 1.08996 * 109.47340 * 179.97438 * 27 26 25 47 47 H 1.09006 * 109.46897 * 300.00109 * 27 26 25 48 48 H 1.08997 * 109.46540 * 60.00426 * 28 26 25 49 49 H 1.08995 * 109.46794 * 179.97438 * 28 26 25 50 50 H 1.08994 * 109.47461 * 300.00274 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0900 -0.8074 -1.2002 5 7 3.4299 -1.2473 -0.7704 6 6 4.4680 -1.5728 -1.6021 7 1 4.3397 -1.5175 -2.6730 8 6 5.6852 -1.9738 -1.0686 9 7 5.8413 -2.0416 0.2365 10 14 7.1015 -2.4171 -2.2031 11 1 7.4477 -1.2434 -3.0445 12 1 8.2813 -2.8103 -1.3915 13 1 6.7011 -3.5504 -3.0751 14 6 3.4671 -1.2781 0.6989 15 6 2.0861 -0.8080 1.2023 16 1 1.4450 -1.6614 1.4229 17 7 2.2285 0.0495 2.3815 18 6 2.2496 -0.4969 3.6134 19 8 2.1509 -1.7013 3.7460 20 6 2.3938 0.3676 4.8024 21 6 2.4329 -0.0562 6.1519 22 6 2.5691 1.0751 6.8826 23 7 2.6169 2.1085 6.0147 24 6 2.7631 3.5158 6.3947 25 6 3.9635 4.1196 5.6630 26 7 4.1104 5.5305 6.0445 27 6 4.4663 5.6578 7.4641 28 6 5.0975 6.2064 5.1918 29 7 2.5104 1.6805 4.8081 30 1 -0.3634 0.4520 0.9229 31 1 -0.3633 0.5731 -0.8530 32 1 -0.3633 -1.0253 -0.0699 33 1 2.1642 -0.1733 -2.0837 34 1 1.4553 -1.6695 -1.4053 35 1 6.6917 -2.3222 0.6092 36 1 4.2434 -0.6057 1.0642 37 1 3.6625 -2.2927 1.0461 38 1 2.3076 1.0105 2.2758 39 1 2.3638 -1.0687 6.5213 40 1 2.6304 1.1391 7.9590 41 1 1.8596 4.0614 6.1224 42 1 2.9202 3.5870 7.4710 43 1 4.8670 3.5739 5.9353 44 1 3.8064 4.0483 4.5868 45 1 5.4104 5.1454 7.6493 46 1 4.5693 6.7123 7.7198 47 1 3.6836 5.2098 8.0764 48 1 4.7735 6.1573 4.1522 49 1 5.1863 7.2494 5.4954 50 1 6.0644 5.7140 5.2947 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079717694.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:03:20 Heat of formation + Delta-G solvation = 56.277470 kcal Electronic energy + Delta-G solvation = -29211.011876 eV Core-core repulsion = 25275.124361 eV Total energy + Delta-G solvation = -3935.887514 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 9.35 seconds Orbital eigenvalues (eV) -43.64216 -40.81139 -39.07611 -38.64994 -35.64945 -34.70386 -34.20122 -32.19255 -31.72347 -30.50060 -29.38639 -28.52190 -27.41751 -26.34116 -25.25494 -23.86697 -22.47512 -22.30667 -21.80244 -21.53424 -20.62903 -18.93218 -18.81193 -17.74699 -17.41141 -17.13246 -16.87905 -16.50524 -16.12108 -15.75029 -15.69114 -15.47153 -15.16509 -14.82845 -14.68819 -14.53715 -14.26602 -14.09069 -13.93342 -13.73756 -13.39005 -13.34605 -13.05458 -13.00724 -12.85900 -12.67411 -12.58199 -12.56523 -12.26442 -12.20573 -12.07620 -11.86272 -11.80251 -11.68071 -11.47500 -11.20227 -10.74620 -10.31066 -10.10329 -9.92456 -9.48250 -8.93749 -7.84447 -5.23248 0.53242 1.20135 1.42960 1.44709 1.48076 1.54244 2.15426 2.40735 2.49379 2.92722 3.32565 3.33481 3.56818 3.71335 3.77486 3.85754 3.97835 4.04494 4.09130 4.12087 4.22884 4.27673 4.44611 4.47355 4.58548 4.60312 4.62166 4.71315 4.73802 4.77888 4.79192 4.82333 4.87608 4.98626 5.03901 5.05029 5.07244 5.19407 5.27649 5.32978 5.43815 5.48461 5.60355 5.76303 5.80860 5.89234 5.98528 6.15421 6.47739 6.91258 7.05031 7.20967 7.74713 8.39308 9.24563 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010123 B = 0.002873 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.277380 B = 9744.005698 C =10742.396929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.094 4.094 3 H 0.087 0.913 4 C 0.134 3.866 5 N -0.628 5.628 6 C -0.243 4.243 7 H 0.090 0.910 8 C -0.073 4.073 9 N -0.954 5.954 10 Si 0.984 3.016 11 H -0.272 1.272 12 H -0.298 1.298 13 H -0.275 1.275 14 C 0.191 3.809 15 C 0.135 3.865 16 H 0.078 0.922 17 N -0.690 5.690 18 C 0.596 3.404 19 O -0.576 6.576 20 C -0.041 4.041 21 C -0.204 4.204 22 C 0.008 3.992 23 N -0.276 5.276 24 C 0.125 3.875 25 C 0.045 3.955 26 N -0.548 5.548 27 C 0.012 3.988 28 C 0.022 3.978 29 N -0.270 5.270 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.029 0.971 35 H 0.244 0.756 36 H 0.013 0.987 37 H -0.008 1.008 38 H 0.412 0.588 39 H 0.161 0.839 40 H 0.233 0.767 41 H 0.112 0.888 42 H 0.141 0.859 43 H 0.032 0.968 44 H 0.072 0.928 45 H 0.026 0.974 46 H 0.081 0.919 47 H 0.089 0.911 48 H 0.065 0.935 49 H 0.087 0.913 50 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.865 19.038 17.442 27.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.114 4.114 3 H 0.106 0.894 4 C 0.009 3.991 5 N -0.354 5.354 6 C -0.372 4.372 7 H 0.108 0.892 8 C -0.265 4.265 9 N -0.603 5.603 10 Si 0.811 3.189 11 H -0.197 1.197 12 H -0.224 1.224 13 H -0.201 1.201 14 C 0.064 3.936 15 C 0.029 3.971 16 H 0.096 0.904 17 N -0.340 5.340 18 C 0.382 3.618 19 O -0.454 6.454 20 C -0.200 4.200 21 C -0.233 4.233 22 C -0.135 4.135 23 N -0.065 5.065 24 C 0.006 3.994 25 C -0.084 4.084 26 N -0.272 5.272 27 C -0.136 4.136 28 C -0.126 4.126 29 N -0.108 5.108 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.047 0.953 35 H 0.053 0.947 36 H 0.031 0.969 37 H 0.010 0.990 38 H 0.248 0.752 39 H 0.179 0.821 40 H 0.249 0.751 41 H 0.130 0.870 42 H 0.159 0.841 43 H 0.050 0.950 44 H 0.090 0.910 45 H 0.044 0.956 46 H 0.100 0.900 47 H 0.107 0.893 48 H 0.084 0.916 49 H 0.106 0.894 50 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -9.134 19.417 16.772 27.235 hybrid contribution 2.156 -1.509 -0.023 2.632 sum -6.977 17.908 16.750 25.493 Atomic orbital electron populations 1.21641 0.91518 1.02467 1.02910 1.22577 0.97443 0.98741 0.92628 0.89434 1.21889 0.85240 0.95823 0.96179 1.44723 1.09730 1.79119 1.01854 1.19500 0.90149 1.37637 0.89868 0.89187 1.25791 1.00861 1.02387 0.97465 1.70260 1.24302 1.54523 1.11184 0.85076 0.78008 0.78414 0.77375 1.19716 1.22421 1.20118 1.21066 0.92420 0.96480 0.83640 1.22152 0.96750 0.93590 0.84632 0.90407 1.45631 1.72689 1.11063 1.04618 1.17376 0.75496 0.86362 0.82550 1.90753 1.52296 1.15756 1.86624 1.21765 1.12575 0.90582 0.95051 1.22008 1.09396 1.01144 0.90710 1.23475 1.05425 0.85084 0.99521 1.45849 1.48921 1.09257 1.02463 1.22259 1.00894 0.73833 1.02454 1.22247 0.96419 0.88860 1.00898 1.61962 1.48306 1.11765 1.05200 1.22642 1.00109 1.03380 0.87423 1.22437 0.92643 0.99713 0.97794 1.73419 1.19126 1.11923 1.06324 0.91777 0.90091 0.92665 0.92470 0.95326 0.94739 0.96875 0.98982 0.75190 0.82124 0.75102 0.87034 0.84127 0.95005 0.90981 0.95582 0.89980 0.89278 0.91597 0.89438 0.95873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.30 9.32 71.98 0.67 -2.63 16 2 C -0.09 -3.25 3.27 -9.33 -0.03 -3.28 16 3 H 0.09 2.87 8.00 -2.39 -0.02 2.85 16 4 C 0.13 5.57 6.72 86.93 0.58 6.15 16 5 N -0.63 -34.30 3.40 -691.57 -2.35 -36.65 16 6 C -0.24 -14.23 10.28 84.03 0.86 -13.37 16 7 H 0.09 4.92 7.83 -2.91 -0.02 4.90 16 8 C -0.07 -4.37 5.49 84.86 0.47 -3.90 16 9 N -0.95 -61.98 10.31 21.65 0.22 -61.75 16 10 Si 0.98 47.91 29.55 68.60 2.03 49.94 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 13 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 14 C 0.19 10.55 5.13 86.73 0.44 11.00 16 15 C 0.13 5.71 2.74 46.18 0.13 5.84 16 16 H 0.08 3.49 7.52 -2.39 -0.02 3.47 16 17 N -0.69 -26.43 5.11 -439.89 -2.25 -28.68 16 18 C 0.60 24.35 7.82 86.75 0.68 25.03 16 19 O -0.58 -27.95 16.61 -3.93 -0.07 -28.02 16 20 C -0.04 -1.36 7.13 42.46 0.30 -1.06 16 21 C -0.20 -5.45 10.81 22.41 0.24 -5.20 16 22 C 0.01 0.13 11.40 83.54 0.95 1.08 16 23 N -0.28 -5.34 3.41 -347.95 -1.19 -6.53 16 24 C 0.12 1.42 6.32 86.38 0.55 1.96 16 25 C 0.04 0.69 5.06 86.30 0.44 1.13 16 26 N -0.55 -6.94 5.02 -948.83 -4.76 -11.70 16 27 C 0.01 0.09 9.32 127.69 1.19 1.28 16 28 C 0.02 0.29 9.57 127.69 1.22 1.51 16 29 N -0.27 -7.55 11.36 -48.17 -0.55 -8.09 16 30 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.05 1.46 8.08 -2.39 -0.02 1.44 16 33 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.03 1.17 7.99 -2.39 -0.02 1.15 16 35 H 0.24 15.50 8.31 -92.71 -0.77 14.73 16 36 H 0.01 0.81 7.27 -2.39 -0.02 0.79 16 37 H -0.01 -0.53 7.51 -2.39 -0.02 -0.55 16 38 H 0.41 13.84 8.26 -92.71 -0.77 13.07 16 39 H 0.16 4.16 8.06 -2.91 -0.02 4.14 16 40 H 0.23 1.36 8.06 -2.91 -0.02 1.33 16 41 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.14 0.53 6.45 -2.39 -0.02 0.52 16 43 H 0.03 0.56 8.12 -2.38 -0.02 0.54 16 44 H 0.07 1.46 8.01 -2.39 -0.02 1.44 16 45 H 0.03 0.23 8.14 -2.39 -0.02 0.21 16 46 H 0.08 0.50 8.12 -2.39 -0.02 0.48 16 47 H 0.09 0.33 6.47 -2.38 -0.02 0.31 16 48 H 0.07 0.94 8.12 -2.39 -0.02 0.92 16 49 H 0.09 0.84 8.12 -2.39 -0.02 0.82 16 50 H 0.02 0.32 8.14 -2.39 -0.02 0.30 16 Total: -1.00 -84.42 405.60 -0.05 -84.47 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 0.16 Total: 21.47 kcal Atomic # 6 Polarization: 16.84 SS G_CDS: 8.70 Total: 25.54 kcal Atomic # 7 Polarization: -142.53 SS G_CDS: -10.87 Total: -153.40 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.07 Total: -28.02 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 2.03 Total: 49.94 kcal Total: -84.42 -0.05 -84.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079717694.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.749 kcal (2) G-P(sol) polarization free energy of solvation -84.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.35 seconds