Wall clock time and date at job start Wed Apr 1 2020 01:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.88902 * 2 1 4 4 C 1.54908 * 111.00591 * 236.08184 * 2 1 3 5 5 N 1.47426 * 104.83670 * 204.91523 * 4 2 1 6 6 C 1.36932 * 125.65153 * 204.17324 * 5 4 2 7 7 H 1.07997 * 120.00056 * 359.97151 * 6 5 4 8 8 C 1.38816 * 119.99814 * 179.97438 * 6 5 4 9 9 N 1.31611 * 120.00205 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99768 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46959 * 359.97438 * 10 8 6 12 12 H 1.48505 * 109.46956 * 119.99818 * 10 8 6 13 13 H 1.48498 * 109.47065 * 239.99868 * 10 8 6 14 14 C 1.47023 * 108.70017 * 24.12554 * 5 4 2 15 15 C 1.54327 * 107.27183 * 358.94170 * 14 5 4 16 16 H 1.08996 * 110.71969 * 96.16805 * 15 14 5 17 17 N 1.46497 * 110.87239 * 219.37194 * 15 14 5 18 18 C 1.34779 * 120.00216 * 268.60702 * 17 15 14 19 19 O 1.21597 * 119.99700 * 0.02562 * 18 17 15 20 20 C 1.47430 * 120.00065 * 180.02562 * 18 17 15 21 21 C 1.41291 * 126.41558 * 0.02562 * 20 18 17 22 22 N 1.30443 * 108.02437 * 179.97438 * 21 20 18 23 23 N 1.39938 * 108.89871 * 0.02562 * 22 21 20 24 24 C 1.46492 * 125.75727 * 180.02562 * 23 22 21 25 25 C 1.53005 * 109.46724 * 304.97176 * 24 23 22 26 26 N 1.46902 * 109.46928 * 180.02562 * 25 24 23 27 27 C 1.46897 * 111.00452 * 66.04372 * 26 25 24 28 28 C 1.46907 * 110.99895 * 190.00175 * 26 25 24 29 29 C 1.34263 * 108.48789 * 359.74911 * 23 22 21 30 30 H 1.09002 * 109.47153 * 296.11557 * 1 2 3 31 31 H 1.09001 * 109.46832 * 176.11748 * 1 2 3 32 32 H 1.09004 * 109.47261 * 56.11729 * 1 2 3 33 33 H 1.09003 * 110.36654 * 323.74987 * 4 2 1 34 34 H 1.08998 * 110.36887 * 86.07685 * 4 2 1 35 35 H 0.97005 * 120.00392 * 180.02562 * 9 8 6 36 36 H 1.09007 * 109.88487 * 239.52729 * 14 5 4 37 37 H 1.08997 * 109.88719 * 118.35903 * 14 5 4 38 38 H 0.97000 * 119.99711 * 88.61486 * 17 15 14 39 39 H 1.08003 * 125.98718 * 359.94143 * 21 20 18 40 40 H 1.08997 * 109.47723 * 64.96734 * 24 23 22 41 41 H 1.08994 * 109.47269 * 184.97715 * 24 23 22 42 42 H 1.08996 * 109.47165 * 299.99635 * 25 24 23 43 43 H 1.08998 * 109.47501 * 60.00120 * 25 24 23 44 44 H 1.09003 * 109.46782 * 59.99956 * 27 26 25 45 45 H 1.08997 * 109.47248 * 179.97438 * 27 26 25 46 46 H 1.08993 * 109.47108 * 300.00088 * 27 26 25 47 47 H 1.08995 * 109.47052 * 59.99601 * 28 26 25 48 48 H 1.09002 * 109.46890 * 180.02562 * 28 26 25 49 49 H 1.09000 * 109.46620 * 299.99650 * 28 26 25 50 50 H 1.08003 * 126.29064 * 180.24909 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8070 -1.2001 5 7 3.4272 -1.2433 -0.7730 6 6 4.4645 -1.5656 -1.6067 7 1 4.3340 -1.5105 -2.6774 8 6 5.6838 -1.9634 -1.0757 9 7 5.8431 -2.0302 0.2290 10 14 7.0988 -2.4038 -2.2131 11 1 6.6656 -2.2485 -3.6250 12 1 8.2481 -1.5024 -1.9454 13 1 7.5071 -3.8112 -1.9731 14 6 3.4675 -1.2739 0.6963 15 6 2.0862 -0.8075 1.2024 16 1 1.4468 -1.6627 1.4214 17 7 2.2248 0.0493 2.3826 18 6 2.1958 -0.4928 3.6162 19 8 2.0551 -1.6932 3.7495 20 6 2.3347 0.3696 4.8039 21 6 2.5032 1.7724 4.8067 22 7 2.5869 2.1664 6.0474 23 7 2.4781 1.0510 6.8854 24 6 2.5232 1.0726 8.3495 25 6 3.8097 1.7610 8.8099 26 7 3.8553 1.7821 10.2781 27 6 3.9731 0.4222 10.8209 28 6 4.9489 2.6373 10.7585 29 6 2.3192 -0.0417 6.1215 30 1 -0.3633 0.4524 0.9228 31 1 -0.3633 -1.0253 -0.0696 32 1 -0.3634 0.5729 -0.8532 33 1 1.4519 -1.6708 -1.4019 34 1 2.1560 -0.1726 -2.0836 35 1 6.6952 -2.3078 0.6001 36 1 4.2427 -0.5993 1.0601 37 1 3.6651 -2.2889 1.0408 38 1 2.3372 1.0069 2.2762 39 1 2.5544 2.4072 3.9344 40 1 1.6616 1.6200 8.7316 41 1 2.5021 0.0510 8.7288 42 1 4.6714 1.2136 8.4279 43 1 3.8310 2.7826 8.4306 44 1 4.8881 -0.0392 10.4494 45 1 4.0052 0.4670 11.9094 46 1 3.1139 -0.1701 10.5064 47 1 4.7990 3.6552 10.3987 48 1 4.9602 2.6347 11.8485 49 1 5.8992 2.2561 10.3848 50 1 2.2029 -1.0562 6.4732 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080593216.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:03:32 Heat of formation + Delta-G solvation = 77.389842 kcal Electronic energy + Delta-G solvation = -28767.077790 eV Core-core repulsion = 24832.105777 eV Total energy + Delta-G solvation = -3934.972013 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.42883 -39.12553 -38.10524 -37.26739 -33.98752 -33.64990 -32.49442 -30.47987 -30.31614 -29.41363 -28.09337 -27.54461 -25.59707 -25.02394 -23.76676 -22.48563 -21.97682 -20.73013 -20.32718 -19.85850 -19.37244 -17.84169 -16.83391 -16.28879 -16.23873 -15.73819 -15.56388 -15.16837 -14.98135 -14.85922 -14.35734 -14.00024 -13.96087 -13.65484 -13.57654 -13.03703 -12.92200 -12.87443 -12.67101 -12.60713 -12.45287 -12.20600 -12.07633 -11.87495 -11.64724 -11.62703 -11.27963 -11.02415 -10.95157 -10.75978 -10.52464 -10.31810 -9.91728 -9.86849 -9.69707 -9.65606 -9.42668 -8.95143 -8.75313 -8.56917 -8.29744 -6.77905 -5.64360 -2.99386 1.53919 2.10996 2.21832 3.43152 3.46154 3.48215 3.51144 3.66969 3.82603 4.13029 4.46028 4.54364 4.62585 4.68424 4.72063 4.83505 4.89837 5.00904 5.11072 5.12879 5.20503 5.28789 5.37954 5.38483 5.41033 5.43416 5.50608 5.51191 5.60140 5.73090 5.84113 6.06027 6.07215 6.22596 6.26122 6.32812 6.40749 6.42786 6.44794 6.56508 6.68685 6.71232 6.88504 7.02814 7.44465 7.63535 7.67618 7.91578 8.06407 8.31139 8.75176 9.26786 9.87579 10.52862 11.46084 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013233 B = 0.002394 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.337372 B =11694.728171 C =13141.755225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.114 4.114 3 H 0.077 0.923 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.228 4.228 7 H 0.079 0.921 8 C -0.009 4.009 9 N -0.918 5.918 10 Si 0.911 3.089 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.173 3.827 15 C 0.123 3.877 16 H 0.089 0.911 17 N -0.707 5.707 18 C 0.593 3.407 19 O -0.550 6.550 20 C -0.281 4.281 21 C 0.083 3.917 22 N -0.298 5.298 23 N -0.364 5.364 24 C 0.136 3.864 25 C 0.043 3.957 26 N -0.545 5.545 27 C 0.015 3.985 28 C 0.025 3.975 29 C 0.124 3.876 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.022 0.978 34 H 0.041 0.959 35 H 0.251 0.749 36 H 0.051 0.949 37 H 0.047 0.953 38 H 0.394 0.606 39 H 0.190 0.810 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.043 0.957 43 H 0.092 0.908 44 H 0.030 0.970 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.071 0.929 48 H 0.072 0.928 49 H 0.028 0.972 50 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.332 9.708 19.189 23.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.134 4.134 3 H 0.095 0.905 4 C 0.014 3.986 5 N -0.333 5.333 6 C -0.357 4.357 7 H 0.097 0.903 8 C -0.205 4.205 9 N -0.565 5.565 10 Si 0.741 3.259 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.218 1.218 14 C 0.047 3.953 15 C 0.018 3.982 16 H 0.107 0.893 17 N -0.356 5.356 18 C 0.379 3.621 19 O -0.429 6.429 20 C -0.296 4.296 21 C -0.105 4.105 22 N -0.118 5.118 23 N -0.144 5.144 24 C 0.014 3.986 25 C -0.086 4.086 26 N -0.270 5.270 27 C -0.133 4.133 28 C -0.123 4.123 29 C -0.027 4.027 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.039 0.961 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.228 0.772 39 H 0.206 0.794 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.061 0.939 43 H 0.111 0.889 44 H 0.049 0.951 45 H 0.091 0.909 46 H 0.089 0.911 47 H 0.090 0.910 48 H 0.090 0.910 49 H 0.047 0.953 50 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -8.493 9.972 20.402 24.245 hybrid contribution 1.678 -0.853 -1.386 2.337 sum -6.815 9.119 19.016 22.163 Atomic orbital electron populations 1.21694 0.95096 1.01741 1.00935 1.22617 0.94795 0.99516 0.96479 0.90489 1.21589 0.87638 0.95005 0.94343 1.44424 1.07828 1.79193 1.01865 1.19091 0.89273 1.38347 0.88949 0.90310 1.24829 0.97879 1.01843 0.95985 1.69991 1.23984 1.53390 1.09146 0.86060 0.82461 0.77740 0.79593 1.20518 1.21855 1.21800 1.21478 0.90214 1.00368 0.83224 1.22464 1.00190 0.92792 0.82797 0.89321 1.45659 1.73940 1.10719 1.05326 1.17156 0.76002 0.86755 0.82159 1.90766 1.50788 1.14842 1.86483 1.20384 1.21592 0.94013 0.93644 1.24085 0.97041 0.93942 0.95456 1.77110 1.24882 1.08620 1.01170 1.48416 1.54685 1.04714 1.06597 1.21731 1.00113 1.03123 0.73605 1.22358 0.95993 1.02641 0.87618 1.61916 1.45863 1.11644 1.07556 1.22533 1.00825 0.89141 1.00849 1.22389 0.91429 0.97528 1.00935 1.22957 0.95946 0.93294 0.90460 0.93065 0.92636 0.92883 0.96063 0.94052 0.93860 0.93134 0.93500 0.77246 0.79368 0.88467 0.88380 0.93853 0.88935 0.95135 0.90906 0.91069 0.90989 0.90966 0.95307 0.79649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.31 37.16 0.35 -1.51 16 2 C -0.11 -1.92 3.27 -88.47 -0.29 -2.21 16 3 H 0.08 1.23 8.01 -51.93 -0.42 0.82 16 4 C 0.14 2.89 6.70 -2.53 -0.02 2.87 16 5 N -0.61 -15.70 3.39 -170.07 -0.58 -16.27 16 6 C -0.23 -6.45 10.28 -15.06 -0.15 -6.61 16 7 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 8 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 9 N -0.92 -27.78 10.31 55.49 0.57 -27.21 16 10 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 14 C 0.17 4.35 5.13 -3.06 -0.02 4.33 16 15 C 0.12 2.38 2.78 -66.10 -0.18 2.19 16 16 H 0.09 1.84 7.44 -51.93 -0.39 1.45 16 17 N -0.71 -11.69 5.10 -53.10 -0.27 -11.96 16 18 C 0.59 10.40 7.81 -12.52 -0.10 10.30 16 19 O -0.55 -11.75 16.54 5.28 0.09 -11.66 16 20 C -0.28 -3.99 6.13 -105.07 -0.64 -4.63 16 21 C 0.08 1.01 11.50 -16.98 -0.20 0.82 16 22 N -0.30 -3.72 12.33 30.86 0.38 -3.34 16 23 N -0.36 -3.98 3.65 -60.81 -0.22 -4.20 16 24 C 0.14 1.04 6.41 -4.04 -0.03 1.02 16 25 C 0.04 0.34 5.13 -3.82 -0.02 0.32 16 26 N -0.55 -3.85 5.02 -251.26 -1.26 -5.11 16 27 C 0.01 0.08 9.32 60.06 0.56 0.64 16 28 C 0.03 0.15 9.57 60.07 0.57 0.73 16 29 C 0.12 1.51 11.25 -16.56 -0.19 1.32 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.77 8.07 -51.93 -0.42 0.35 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.02 0.44 7.98 -51.93 -0.41 0.02 16 34 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.05 1.40 7.27 -51.92 -0.38 1.02 16 37 H 0.05 1.37 7.51 -51.93 -0.39 0.98 16 38 H 0.39 5.32 7.52 -40.82 -0.31 5.01 16 39 H 0.19 1.75 7.50 -52.48 -0.39 1.36 16 40 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.10 0.55 6.47 -51.93 -0.34 0.22 16 42 H 0.04 0.40 8.12 -51.93 -0.42 -0.03 16 43 H 0.09 0.84 8.06 -51.93 -0.42 0.42 16 44 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 45 H 0.07 0.35 8.12 -51.93 -0.42 -0.08 16 46 H 0.07 0.34 6.47 -51.93 -0.34 0.00 16 47 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 48 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 49 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 50 H 0.19 1.88 8.06 -52.48 -0.42 1.46 16 LS Contribution 405.15 15.07 6.11 6.11 Total: -1.00 -35.49 405.15 -9.04 -44.53 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -8.39 Total: 2.41 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: -0.44 Total: 9.23 kcal Atomic # 7 Polarization: -66.72 SS G_CDS: -1.38 Total: -68.10 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.09 Total: -11.66 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.49 -9.04 -44.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080593216.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.917 kcal (2) G-P(sol) polarization free energy of solvation -35.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds