Wall clock time and date at job start Wed Apr 1 2020 01:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.88902 * 2 1 4 4 C 1.54908 * 111.00591 * 236.08184 * 2 1 3 5 5 N 1.47426 * 104.83670 * 204.91523 * 4 2 1 6 6 C 1.36932 * 125.65153 * 204.17324 * 5 4 2 7 7 H 1.07997 * 120.00056 * 359.97151 * 6 5 4 8 8 C 1.38816 * 119.99814 * 179.97438 * 6 5 4 9 9 N 1.31611 * 120.00205 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99768 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46959 * 359.97438 * 10 8 6 12 12 H 1.48505 * 109.46956 * 119.99818 * 10 8 6 13 13 H 1.48498 * 109.47065 * 239.99868 * 10 8 6 14 14 C 1.47023 * 108.70017 * 24.12554 * 5 4 2 15 15 C 1.54327 * 107.27183 * 358.94170 * 14 5 4 16 16 H 1.08996 * 110.71969 * 96.16805 * 15 14 5 17 17 N 1.46497 * 110.87239 * 219.37194 * 15 14 5 18 18 C 1.34779 * 120.00216 * 268.60702 * 17 15 14 19 19 O 1.21597 * 119.99700 * 0.02562 * 18 17 15 20 20 C 1.47430 * 120.00065 * 180.02562 * 18 17 15 21 21 C 1.41291 * 126.41558 * 0.02562 * 20 18 17 22 22 N 1.30443 * 108.02437 * 179.97438 * 21 20 18 23 23 N 1.39938 * 108.89871 * 0.02562 * 22 21 20 24 24 C 1.46492 * 125.75727 * 180.02562 * 23 22 21 25 25 C 1.53005 * 109.46724 * 304.97176 * 24 23 22 26 26 N 1.46902 * 109.46928 * 180.02562 * 25 24 23 27 27 C 1.46897 * 111.00452 * 66.04372 * 26 25 24 28 28 C 1.46907 * 110.99895 * 190.00175 * 26 25 24 29 29 C 1.34263 * 108.48789 * 359.74911 * 23 22 21 30 30 H 1.09002 * 109.47153 * 296.11557 * 1 2 3 31 31 H 1.09001 * 109.46832 * 176.11748 * 1 2 3 32 32 H 1.09004 * 109.47261 * 56.11729 * 1 2 3 33 33 H 1.09003 * 110.36654 * 323.74987 * 4 2 1 34 34 H 1.08998 * 110.36887 * 86.07685 * 4 2 1 35 35 H 0.97005 * 120.00392 * 180.02562 * 9 8 6 36 36 H 1.09007 * 109.88487 * 239.52729 * 14 5 4 37 37 H 1.08997 * 109.88719 * 118.35903 * 14 5 4 38 38 H 0.97000 * 119.99711 * 88.61486 * 17 15 14 39 39 H 1.08003 * 125.98718 * 359.94143 * 21 20 18 40 40 H 1.08997 * 109.47723 * 64.96734 * 24 23 22 41 41 H 1.08994 * 109.47269 * 184.97715 * 24 23 22 42 42 H 1.08996 * 109.47165 * 299.99635 * 25 24 23 43 43 H 1.08998 * 109.47501 * 60.00120 * 25 24 23 44 44 H 1.09003 * 109.46782 * 59.99956 * 27 26 25 45 45 H 1.08997 * 109.47248 * 179.97438 * 27 26 25 46 46 H 1.08993 * 109.47108 * 300.00088 * 27 26 25 47 47 H 1.08995 * 109.47052 * 59.99601 * 28 26 25 48 48 H 1.09002 * 109.46890 * 180.02562 * 28 26 25 49 49 H 1.09000 * 109.46620 * 299.99650 * 28 26 25 50 50 H 1.08003 * 126.29064 * 180.24909 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8070 -1.2001 5 7 3.4272 -1.2433 -0.7730 6 6 4.4645 -1.5656 -1.6067 7 1 4.3340 -1.5105 -2.6774 8 6 5.6838 -1.9634 -1.0757 9 7 5.8431 -2.0302 0.2290 10 14 7.0988 -2.4038 -2.2131 11 1 6.6656 -2.2485 -3.6250 12 1 8.2481 -1.5024 -1.9454 13 1 7.5071 -3.8112 -1.9731 14 6 3.4675 -1.2739 0.6963 15 6 2.0862 -0.8075 1.2024 16 1 1.4468 -1.6627 1.4214 17 7 2.2248 0.0493 2.3826 18 6 2.1958 -0.4928 3.6162 19 8 2.0551 -1.6932 3.7495 20 6 2.3347 0.3696 4.8039 21 6 2.5032 1.7724 4.8067 22 7 2.5869 2.1664 6.0474 23 7 2.4781 1.0510 6.8854 24 6 2.5232 1.0726 8.3495 25 6 3.8097 1.7610 8.8099 26 7 3.8553 1.7821 10.2781 27 6 3.9731 0.4222 10.8209 28 6 4.9489 2.6373 10.7585 29 6 2.3192 -0.0417 6.1215 30 1 -0.3633 0.4524 0.9228 31 1 -0.3633 -1.0253 -0.0696 32 1 -0.3634 0.5729 -0.8532 33 1 1.4519 -1.6708 -1.4019 34 1 2.1560 -0.1726 -2.0836 35 1 6.6952 -2.3078 0.6001 36 1 4.2427 -0.5993 1.0601 37 1 3.6651 -2.2889 1.0408 38 1 2.3372 1.0069 2.2762 39 1 2.5544 2.4072 3.9344 40 1 1.6616 1.6200 8.7316 41 1 2.5021 0.0510 8.7288 42 1 4.6714 1.2136 8.4279 43 1 3.8310 2.7826 8.4306 44 1 4.8881 -0.0392 10.4494 45 1 4.0052 0.4670 11.9094 46 1 3.1139 -0.1701 10.5064 47 1 4.7990 3.6552 10.3987 48 1 4.9602 2.6347 11.8485 49 1 5.8992 2.2561 10.3848 50 1 2.2029 -1.0562 6.4732 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080593216.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:03:31 Heat of formation + Delta-G solvation = 51.161703 kcal Electronic energy + Delta-G solvation = -28768.215128 eV Core-core repulsion = 24832.105777 eV Total energy + Delta-G solvation = -3936.109350 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.40310 -40.59640 -38.96973 -38.61712 -35.58253 -34.71636 -34.07760 -32.14009 -31.47860 -30.38626 -29.15182 -28.54594 -27.34007 -25.89115 -25.24071 -23.79671 -22.68183 -21.95116 -21.67855 -21.32991 -20.67957 -18.91351 -18.84501 -17.32338 -17.23092 -16.91872 -16.82139 -16.28102 -16.00131 -15.83747 -15.61534 -15.46313 -15.20187 -14.88551 -14.65580 -14.40486 -14.26219 -14.07062 -13.76584 -13.66908 -13.40957 -13.29845 -13.04147 -12.99402 -12.87955 -12.70698 -12.59451 -12.58118 -12.40722 -12.12828 -12.01249 -11.83847 -11.81288 -11.60716 -11.41476 -10.86753 -10.73824 -10.60385 -10.03197 -9.62702 -9.49291 -8.90204 -7.82852 -5.20582 0.52252 1.17019 1.28858 1.44764 1.46617 1.57001 2.31357 2.51383 2.53923 2.89250 3.35112 3.40522 3.64504 3.78870 3.80000 3.84405 3.89881 4.11448 4.12827 4.15555 4.16557 4.26338 4.30395 4.44747 4.53688 4.58894 4.61422 4.65829 4.75786 4.77271 4.78042 4.80234 4.92099 4.97182 5.00787 5.10770 5.12110 5.29217 5.34884 5.39562 5.47768 5.54155 5.67779 5.75890 5.84614 5.88342 5.95457 6.18704 6.48677 6.73368 7.08549 7.39942 7.77878 8.41888 9.26235 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013233 B = 0.002394 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.337372 B =11694.728171 C =13141.755225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.094 4.094 3 H 0.093 0.907 4 C 0.132 3.868 5 N -0.628 5.628 6 C -0.238 4.238 7 H 0.089 0.911 8 C -0.072 4.072 9 N -0.952 5.952 10 Si 0.980 3.020 11 H -0.261 1.261 12 H -0.292 1.292 13 H -0.297 1.297 14 C 0.188 3.812 15 C 0.138 3.862 16 H 0.074 0.926 17 N -0.697 5.697 18 C 0.591 3.409 19 O -0.597 6.597 20 C -0.309 4.309 21 C 0.089 3.911 22 N -0.313 5.313 23 N -0.356 5.356 24 C 0.132 3.868 25 C 0.051 3.949 26 N -0.550 5.550 27 C 0.012 3.988 28 C 0.023 3.977 29 C 0.133 3.867 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.025 0.975 34 H 0.056 0.944 35 H 0.243 0.757 36 H 0.018 0.982 37 H -0.011 1.011 38 H 0.411 0.589 39 H 0.214 0.786 40 H 0.108 0.892 41 H 0.122 0.878 42 H 0.029 0.971 43 H 0.079 0.921 44 H 0.024 0.976 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.071 0.929 48 H 0.085 0.915 49 H 0.023 0.977 50 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.735 11.353 19.408 24.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.114 4.114 3 H 0.111 0.889 4 C 0.007 3.993 5 N -0.354 5.354 6 C -0.367 4.367 7 H 0.107 0.893 8 C -0.265 4.265 9 N -0.602 5.602 10 Si 0.808 3.192 11 H -0.185 1.185 12 H -0.219 1.219 13 H -0.224 1.224 14 C 0.062 3.938 15 C 0.032 3.968 16 H 0.092 0.908 17 N -0.347 5.347 18 C 0.380 3.620 19 O -0.479 6.479 20 C -0.324 4.324 21 C -0.099 4.099 22 N -0.132 5.132 23 N -0.135 5.135 24 C 0.012 3.988 25 C -0.078 4.078 26 N -0.274 5.274 27 C -0.136 4.136 28 C -0.125 4.125 29 C -0.020 4.020 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.036 0.964 37 H 0.007 0.993 38 H 0.248 0.752 39 H 0.231 0.769 40 H 0.126 0.874 41 H 0.140 0.860 42 H 0.047 0.953 43 H 0.098 0.902 44 H 0.043 0.957 45 H 0.102 0.898 46 H 0.100 0.900 47 H 0.090 0.910 48 H 0.104 0.896 49 H 0.042 0.958 50 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -9.932 11.688 20.618 25.697 hybrid contribution 2.106 -1.379 -1.379 2.871 sum -7.826 10.309 19.238 23.186 Atomic orbital electron populations 1.21645 0.91776 1.02207 1.02967 1.22542 0.97248 0.98976 0.92591 0.88866 1.21866 0.85200 0.95786 0.96449 1.44743 1.09484 1.79195 1.02027 1.19555 0.90051 1.37276 0.89847 0.89335 1.25735 1.00735 1.02575 0.97436 1.70255 1.23991 1.54820 1.11086 0.84981 0.78918 0.76695 0.78578 1.18456 1.21912 1.22390 1.21114 0.92821 0.96472 0.83428 1.22024 0.96350 0.93627 0.84796 0.90777 1.45470 1.73588 1.11260 1.04378 1.17644 0.74736 0.86516 0.83082 1.90737 1.53022 1.16984 1.87147 1.20178 1.24614 0.94625 0.93024 1.24447 0.95940 0.93252 0.96250 1.77100 1.25331 1.09421 1.01373 1.48659 1.53239 1.03970 1.07605 1.22017 1.00238 1.04841 0.71711 1.22208 0.95582 1.01610 0.88433 1.61962 1.46235 1.12553 1.06667 1.22616 1.01033 0.88422 1.01505 1.22442 0.90929 0.97337 1.01747 1.23248 0.94339 0.94259 0.90126 0.91422 0.93105 0.90352 0.95703 0.92616 0.94775 0.96415 0.99304 0.75224 0.76936 0.87421 0.85965 0.95311 0.90219 0.95741 0.89817 0.89963 0.91036 0.89627 0.95820 0.77973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 9.31 71.98 0.67 -2.38 16 2 C -0.09 -2.98 3.27 -9.40 -0.03 -3.01 16 3 H 0.09 2.70 8.01 -2.39 -0.02 2.68 16 4 C 0.13 5.27 6.70 86.85 0.58 5.86 16 5 N -0.63 -33.13 3.39 -691.97 -2.35 -35.48 16 6 C -0.24 -13.65 10.28 84.04 0.86 -12.79 16 7 H 0.09 4.77 7.83 -2.91 -0.02 4.74 16 8 C -0.07 -4.26 5.49 84.86 0.47 -3.80 16 9 N -0.95 -60.38 10.31 21.65 0.22 -60.16 16 10 Si 0.98 47.17 29.55 68.60 2.03 49.20 16 11 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 12 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 13 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 14 C 0.19 9.93 5.13 86.73 0.44 10.37 16 15 C 0.14 5.44 2.78 46.18 0.13 5.56 16 16 H 0.07 3.16 7.44 -2.39 -0.02 3.14 16 17 N -0.70 -22.98 5.10 -440.18 -2.25 -25.22 16 18 C 0.59 21.03 7.81 86.66 0.68 21.71 16 19 O -0.60 -26.45 16.54 -4.02 -0.07 -26.51 16 20 C -0.31 -8.61 6.13 -20.15 -0.12 -8.73 16 21 C 0.09 2.05 11.50 85.65 0.99 3.04 16 22 N -0.31 -7.36 12.33 -56.27 -0.69 -8.06 16 23 N -0.36 -7.25 3.65 -346.31 -1.26 -8.52 16 24 C 0.13 1.78 6.41 86.38 0.55 2.34 16 25 C 0.05 0.76 5.13 86.30 0.44 1.21 16 26 N -0.55 -6.99 5.02 -948.84 -4.76 -11.75 16 27 C 0.01 0.12 9.32 127.69 1.19 1.31 16 28 C 0.02 0.26 9.57 127.69 1.22 1.48 16 29 C 0.13 3.09 11.25 84.27 0.95 4.04 16 30 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.05 1.27 8.07 -2.39 -0.02 1.25 16 32 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.03 0.99 7.98 -2.39 -0.02 0.97 16 34 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.24 15.06 8.31 -92.70 -0.77 14.29 16 36 H 0.02 1.03 7.27 -2.38 -0.02 1.02 16 37 H -0.01 -0.72 7.51 -2.39 -0.02 -0.73 16 38 H 0.41 10.57 7.52 -92.71 -0.70 9.88 16 39 H 0.21 3.52 7.50 -2.91 -0.02 3.50 16 40 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.12 1.07 6.47 -2.39 -0.02 1.06 16 42 H 0.03 0.51 8.12 -2.39 -0.02 0.49 16 43 H 0.08 1.41 8.06 -2.39 -0.02 1.39 16 44 H 0.02 0.27 8.14 -2.39 -0.02 0.25 16 45 H 0.08 0.63 8.12 -2.39 -0.02 0.61 16 46 H 0.08 0.59 6.47 -2.39 -0.02 0.58 16 47 H 0.07 0.79 8.12 -2.39 -0.02 0.77 16 48 H 0.09 0.72 8.12 -2.39 -0.02 0.70 16 49 H 0.02 0.28 8.14 -2.39 -0.02 0.27 16 50 H 0.20 3.89 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -81.30 405.15 0.12 -81.18 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.23 Total: 19.10 kcal Atomic # 6 Polarization: 17.19 SS G_CDS: 9.02 Total: 26.21 kcal Atomic # 7 Polarization: -138.10 SS G_CDS: -11.09 Total: -149.19 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.07 Total: -26.51 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -81.30 0.12 -81.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080593216.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.346 kcal (2) G-P(sol) polarization free energy of solvation -81.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds