Wall clock time and date at job start Wed Apr 1 2020 00:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47021 * 2 1 4 4 C 1.53000 * 109.46978 * 120.00184 * 2 1 3 5 5 C 1.52997 * 109.47350 * 65.00269 * 4 2 1 6 6 N 1.46501 * 109.47229 * 180.02562 * 5 4 2 7 7 C 1.34814 * 126.59782 * 124.99920 * 6 5 4 8 8 C 1.36592 * 106.84081 * 179.97438 * 7 6 5 9 9 C 1.47525 * 125.76887 * 179.97438 * 8 7 6 10 10 O 1.21589 * 119.99946 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99729 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99811 * 179.97438 * 11 9 8 13 13 H 1.08996 * 110.63797 * 323.31096 * 12 11 9 14 14 C 1.55155 * 110.71889 * 86.45186 * 12 11 9 15 15 C 1.54912 * 101.57968 * 154.04276 * 14 12 11 16 16 N 1.47426 * 104.83261 * 322.99067 * 15 14 12 17 17 C 1.36941 * 125.64875 * 203.86480 * 16 15 14 18 18 H 1.08001 * 120.00063 * 180.02562 * 17 16 15 19 19 C 1.38810 * 119.99930 * 0.02562 * 17 16 15 20 20 N 1.31617 * 120.00219 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00125 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47105 * 89.99764 * 21 19 17 23 23 H 1.48498 * 109.47318 * 210.00148 * 21 19 17 24 24 H 1.48496 * 109.46962 * 329.99931 * 21 19 17 25 25 C 1.47024 * 108.70449 * 24.12870 * 16 15 14 26 26 H 1.09002 * 109.88101 * 239.52444 * 25 16 15 27 27 C 1.53001 * 109.88112 * 118.35785 * 25 16 15 28 28 N 1.34400 * 108.45928 * 0.23814 * 8 7 6 29 29 N 1.28762 * 109.52053 * 359.59348 * 28 8 7 30 30 H 1.08999 * 109.47111 * 299.99489 * 1 2 3 31 31 H 1.08994 * 109.47269 * 60.00401 * 1 2 3 32 32 H 1.09010 * 109.46673 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46859 * 239.99813 * 2 1 3 34 34 H 1.09000 * 109.46657 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.46932 * 300.00013 * 3 2 1 36 36 H 1.08999 * 109.47095 * 59.99866 * 3 2 1 37 37 H 1.09000 * 109.47293 * 304.99962 * 4 2 1 38 38 H 1.09000 * 109.46834 * 185.00148 * 4 2 1 39 39 H 1.09000 * 109.47173 * 59.99619 * 5 4 2 40 40 H 1.09000 * 109.47053 * 299.99745 * 5 4 2 41 41 H 1.08005 * 126.57608 * 359.97438 * 7 6 5 42 42 H 0.96999 * 120.00347 * 359.97438 * 11 9 8 43 43 H 1.08997 * 111.00368 * 35.97468 * 14 12 11 44 44 H 1.08992 * 111.03872 * 272.12933 * 14 12 11 45 45 H 1.09002 * 110.36496 * 204.15483 * 15 14 12 46 46 H 1.08997 * 110.36790 * 81.83118 * 15 14 12 47 47 H 0.97004 * 120.00482 * 180.02562 * 20 19 17 48 48 H 1.08993 * 109.46793 * 61.45719 * 27 25 16 49 49 H 1.09005 * 109.46593 * 181.45282 * 27 25 16 50 50 H 1.08995 * 109.46984 * 301.45265 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1879 6 7 2.1231 -2.8860 2.3844 7 6 1.3857 -3.6052 3.2541 8 6 2.2426 -4.0664 4.2127 9 6 1.8721 -4.9020 5.3706 10 8 0.7147 -5.2374 5.5328 11 7 2.8163 -5.2926 6.2493 12 6 2.4483 -6.1219 7.3996 13 1 1.4719 -5.8306 7.7866 14 6 2.4614 -7.6259 7.0186 15 6 2.7324 -8.2920 8.3907 16 7 3.6737 -7.3843 9.0714 17 6 4.5419 -7.7372 10.0700 18 1 5.1936 -6.9948 10.5064 19 6 4.5843 -9.0493 10.5212 20 7 3.7904 -9.9542 9.9890 21 14 5.7680 -9.5306 11.8837 22 1 5.1025 -9.3611 13.2004 23 1 6.1704 -10.9496 11.7115 24 1 6.9721 -8.6637 11.8225 25 6 3.5216 -6.0360 8.5052 26 1 4.4681 -5.7044 8.0781 27 6 3.0694 -5.0620 9.5950 28 7 3.4793 -3.6254 3.9257 29 7 3.4468 -2.9264 2.8448 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6054 -0.2618 2.1370 38 1 3.1263 -0.6443 1.2951 39 1 2.0700 -2.6550 0.3002 40 1 0.5490 -2.2725 1.1420 41 1 0.3216 -3.7827 3.2027 42 1 3.7396 -5.0247 6.1202 43 1 3.2637 -7.8434 6.3135 44 1 1.4967 -7.9363 6.6174 45 1 3.1849 -9.2740 8.2529 46 1 1.8073 -8.3763 8.9608 47 1 3.8198 -10.8710 10.3046 48 1 3.8259 -5.0165 10.3782 49 1 2.9339 -4.0706 9.1626 50 1 2.1262 -5.4050 10.0202 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088853837.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:10 Heat of formation + Delta-G solvation = 70.227914 kcal Electronic energy + Delta-G solvation = -28515.613482 eV Core-core repulsion = 24580.330904 eV Total energy + Delta-G solvation = -3935.282578 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -42.36086 -39.41309 -37.78743 -37.40363 -34.62780 -33.91192 -32.00567 -31.18733 -30.32632 -29.82155 -28.46482 -27.77378 -25.27940 -24.87592 -23.95246 -23.12586 -22.07807 -20.75282 -20.47023 -20.01584 -19.65292 -18.00741 -16.73467 -16.44845 -16.33551 -15.95845 -15.79279 -15.02583 -14.82657 -14.66339 -14.38942 -14.11599 -13.98564 -13.78850 -13.68940 -13.31964 -12.90669 -12.72458 -12.61540 -12.41740 -12.08569 -12.07923 -11.94194 -11.60439 -11.55013 -11.50065 -11.28100 -11.15290 -11.08555 -10.82807 -10.78880 -10.55551 -10.47492 -10.39446 -10.05415 -9.86513 -9.69163 -9.51700 -9.43331 -8.63331 -8.54205 -6.82518 -5.61175 -3.03565 0.96534 1.67159 1.76915 3.32710 3.40863 3.43126 3.48311 3.50018 3.84180 4.05905 4.13152 4.25940 4.37422 4.51600 4.58084 4.64792 4.66404 4.84648 4.99323 5.03477 5.09320 5.21346 5.26620 5.32149 5.34271 5.40248 5.47155 5.58613 5.60250 5.65458 5.69326 5.73236 5.75019 5.88554 6.12399 6.19478 6.31463 6.37813 6.40660 6.59322 6.67385 6.77745 6.92229 7.16257 7.56577 7.66058 7.67389 7.89662 7.90960 8.37448 8.41619 9.25147 9.86048 10.50163 11.42327 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.032033 B = 0.001871 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.881223 B =14959.643405 C =15235.015919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.129 4.129 5 C 0.120 3.880 6 N -0.362 5.362 7 C 0.090 3.910 8 C -0.095 4.095 9 C 0.602 3.398 10 O -0.543 6.543 11 N -0.698 5.698 12 C 0.136 3.864 13 H 0.093 0.907 14 C -0.153 4.153 15 C 0.153 3.847 16 N -0.595 5.595 17 C -0.218 4.218 18 H 0.078 0.922 19 C -0.011 4.011 20 N -0.921 5.921 21 Si 0.914 3.086 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.155 3.845 26 H 0.038 0.962 27 C -0.155 4.155 28 N -0.203 5.203 29 N -0.066 5.066 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.204 0.796 42 H 0.406 0.594 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.109 0.891 46 H 0.015 0.985 47 H 0.252 0.748 48 H 0.054 0.946 49 H 0.038 0.962 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.230 19.876 -22.133 30.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.112 4.112 3 C -0.205 4.205 4 C -0.168 4.168 5 C -0.001 4.001 6 N -0.147 5.147 7 C -0.067 4.067 8 C -0.235 4.235 9 C 0.385 3.615 10 O -0.420 6.420 11 N -0.347 5.347 12 C 0.031 3.969 13 H 0.111 0.889 14 C -0.193 4.193 15 C 0.028 3.972 16 N -0.320 5.320 17 C -0.347 4.347 18 H 0.096 0.904 19 C -0.207 4.207 20 N -0.570 5.570 21 Si 0.745 3.255 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.047 3.953 26 H 0.056 0.944 27 C -0.215 4.215 28 N -0.077 5.077 29 N -0.046 5.046 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.116 0.884 40 H 0.124 0.876 41 H 0.220 0.780 42 H 0.241 0.759 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.126 0.874 46 H 0.033 0.967 47 H 0.063 0.937 48 H 0.073 0.927 49 H 0.057 0.943 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.553 19.893 -22.158 30.490 hybrid contribution -0.113 -0.340 0.711 0.796 sum -6.667 19.554 -21.447 29.779 Atomic orbital electron populations 1.21970 0.94918 1.01922 1.02409 1.21069 0.96043 0.96744 0.97384 1.21825 1.01310 0.95313 1.02089 1.21982 1.03177 0.92240 0.99369 1.22183 1.00655 0.93267 0.83990 1.50546 1.07966 1.35826 1.20409 1.23376 0.99977 0.93475 0.89854 1.21600 0.89801 1.10058 1.02025 1.16719 0.85283 0.78800 0.80685 1.90796 1.18673 1.57402 1.75097 1.45877 1.11365 1.51959 1.25498 1.22199 0.99141 0.90655 0.84877 0.88882 1.23408 1.00752 0.94232 1.00878 1.21945 0.92391 0.96532 0.86296 1.44489 1.43447 1.02119 1.41951 1.19032 1.12320 0.93659 1.09649 0.90436 1.24782 0.99735 0.96019 1.00138 1.69801 1.40760 1.02254 1.44155 0.86081 0.80301 0.77582 0.81581 1.21701 1.21720 1.20729 1.20992 0.94578 0.88193 0.91569 0.94413 1.22239 1.01667 0.97604 0.99960 1.74665 1.20253 1.05950 1.06849 1.81961 0.95601 1.19431 1.07595 0.92318 0.92246 0.92503 0.90610 0.92357 0.92337 0.92488 0.90860 0.89864 0.88382 0.87622 0.77957 0.75869 0.91912 0.91870 0.87369 0.96733 0.93749 0.92659 0.94286 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.45 8.95 37.16 0.33 -0.12 16 2 C -0.09 -0.32 2.92 -90.62 -0.26 -0.58 16 3 C -0.15 -0.56 9.19 37.16 0.34 -0.22 16 4 C -0.13 -0.61 4.89 -26.73 -0.13 -0.75 16 5 C 0.12 0.57 6.30 -4.04 -0.03 0.54 16 6 N -0.36 -3.27 3.69 -61.06 -0.23 -3.50 16 7 C 0.09 0.90 11.27 -16.84 -0.19 0.71 16 8 C -0.10 -1.29 6.99 -83.55 -0.58 -1.88 16 9 C 0.60 9.66 7.81 -12.48 -0.10 9.57 16 10 O -0.54 -9.93 16.59 5.29 0.09 -9.84 16 11 N -0.70 -11.43 5.20 -53.07 -0.28 -11.70 16 12 C 0.14 2.56 2.76 -66.09 -0.18 2.38 16 13 H 0.09 1.83 7.40 -51.93 -0.38 1.45 16 14 C -0.15 -3.13 6.77 -24.58 -0.17 -3.29 16 15 C 0.15 3.79 5.88 -2.53 -0.01 3.78 16 16 N -0.59 -15.06 3.13 -162.56 -0.51 -15.57 16 17 C -0.22 -6.01 9.86 -15.06 -0.15 -6.16 16 18 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 19 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 20 N -0.92 -26.90 10.09 55.49 0.56 -26.34 16 21 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 C 0.15 3.21 3.48 -66.95 -0.23 2.98 16 26 H 0.04 0.78 7.70 -51.93 -0.40 0.38 16 27 C -0.16 -2.96 9.14 37.16 0.34 -2.62 16 28 N -0.20 -2.87 12.04 32.85 0.40 -2.48 16 29 N -0.07 -0.81 13.65 60.35 0.82 0.01 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.06 0.12 6.57 -51.92 -0.34 -0.22 16 33 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 35 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.11 0.25 6.51 -51.93 -0.34 -0.09 16 41 H 0.20 1.40 8.06 -52.48 -0.42 0.98 16 42 H 0.41 6.21 8.01 -40.82 -0.33 5.88 16 43 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 45 H 0.11 2.99 5.89 -51.93 -0.31 2.68 16 46 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 48 H 0.05 1.08 8.02 -51.93 -0.42 0.67 16 49 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 405.23 15.07 6.11 6.11 Total: -1.00 -32.92 405.23 -7.58 -40.50 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -8.40 Total: 1.75 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -1.12 Total: 3.92 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: 0.77 Total: -59.58 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.92 -7.58 -40.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088853837.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.725 kcal (2) G-P(sol) polarization free energy of solvation -32.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds