Wall clock time and date at job start Wed Apr 1 2020 00:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47021 * 2 1 4 4 C 1.53000 * 109.46978 * 120.00184 * 2 1 3 5 5 C 1.52997 * 109.47350 * 65.00269 * 4 2 1 6 6 N 1.46501 * 109.47229 * 180.02562 * 5 4 2 7 7 C 1.34814 * 126.59782 * 124.99920 * 6 5 4 8 8 C 1.36592 * 106.84081 * 179.97438 * 7 6 5 9 9 C 1.47525 * 125.76887 * 179.97438 * 8 7 6 10 10 O 1.21589 * 119.99946 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99729 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99811 * 179.97438 * 11 9 8 13 13 H 1.08996 * 110.63797 * 323.31096 * 12 11 9 14 14 C 1.55155 * 110.71889 * 86.45186 * 12 11 9 15 15 C 1.54912 * 101.57968 * 154.04276 * 14 12 11 16 16 N 1.47426 * 104.83261 * 322.99067 * 15 14 12 17 17 C 1.36941 * 125.64875 * 203.86480 * 16 15 14 18 18 H 1.08001 * 120.00063 * 180.02562 * 17 16 15 19 19 C 1.38810 * 119.99930 * 0.02562 * 17 16 15 20 20 N 1.31617 * 120.00219 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00125 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47105 * 89.99764 * 21 19 17 23 23 H 1.48498 * 109.47318 * 210.00148 * 21 19 17 24 24 H 1.48496 * 109.46962 * 329.99931 * 21 19 17 25 25 C 1.47024 * 108.70449 * 24.12870 * 16 15 14 26 26 H 1.09002 * 109.88101 * 239.52444 * 25 16 15 27 27 C 1.53001 * 109.88112 * 118.35785 * 25 16 15 28 28 N 1.34400 * 108.45928 * 0.23814 * 8 7 6 29 29 N 1.28762 * 109.52053 * 359.59348 * 28 8 7 30 30 H 1.08999 * 109.47111 * 299.99489 * 1 2 3 31 31 H 1.08994 * 109.47269 * 60.00401 * 1 2 3 32 32 H 1.09010 * 109.46673 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46859 * 239.99813 * 2 1 3 34 34 H 1.09000 * 109.46657 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.46932 * 300.00013 * 3 2 1 36 36 H 1.08999 * 109.47095 * 59.99866 * 3 2 1 37 37 H 1.09000 * 109.47293 * 304.99962 * 4 2 1 38 38 H 1.09000 * 109.46834 * 185.00148 * 4 2 1 39 39 H 1.09000 * 109.47173 * 59.99619 * 5 4 2 40 40 H 1.09000 * 109.47053 * 299.99745 * 5 4 2 41 41 H 1.08005 * 126.57608 * 359.97438 * 7 6 5 42 42 H 0.96999 * 120.00347 * 359.97438 * 11 9 8 43 43 H 1.08997 * 111.00368 * 35.97468 * 14 12 11 44 44 H 1.08992 * 111.03872 * 272.12933 * 14 12 11 45 45 H 1.09002 * 110.36496 * 204.15483 * 15 14 12 46 46 H 1.08997 * 110.36790 * 81.83118 * 15 14 12 47 47 H 0.97004 * 120.00482 * 180.02562 * 20 19 17 48 48 H 1.08993 * 109.46793 * 61.45719 * 27 25 16 49 49 H 1.09005 * 109.46593 * 181.45282 * 27 25 16 50 50 H 1.08995 * 109.46984 * 301.45265 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1879 6 7 2.1231 -2.8860 2.3844 7 6 1.3857 -3.6052 3.2541 8 6 2.2426 -4.0664 4.2127 9 6 1.8721 -4.9020 5.3706 10 8 0.7147 -5.2374 5.5328 11 7 2.8163 -5.2926 6.2493 12 6 2.4483 -6.1219 7.3996 13 1 1.4719 -5.8306 7.7866 14 6 2.4614 -7.6259 7.0186 15 6 2.7324 -8.2920 8.3907 16 7 3.6737 -7.3843 9.0714 17 6 4.5419 -7.7372 10.0700 18 1 5.1936 -6.9948 10.5064 19 6 4.5843 -9.0493 10.5212 20 7 3.7904 -9.9542 9.9890 21 14 5.7680 -9.5306 11.8837 22 1 5.1025 -9.3611 13.2004 23 1 6.1704 -10.9496 11.7115 24 1 6.9721 -8.6637 11.8225 25 6 3.5216 -6.0360 8.5052 26 1 4.4681 -5.7044 8.0781 27 6 3.0694 -5.0620 9.5950 28 7 3.4793 -3.6254 3.9257 29 7 3.4468 -2.9264 2.8448 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6054 -0.2618 2.1370 38 1 3.1263 -0.6443 1.2951 39 1 2.0700 -2.6550 0.3002 40 1 0.5490 -2.2725 1.1420 41 1 0.3216 -3.7827 3.2027 42 1 3.7396 -5.0247 6.1202 43 1 3.2637 -7.8434 6.3135 44 1 1.4967 -7.9363 6.6174 45 1 3.1849 -9.2740 8.2529 46 1 1.8073 -8.3763 8.9608 47 1 3.8198 -10.8710 10.3046 48 1 3.8259 -5.0165 10.3782 49 1 2.9339 -4.0706 9.1626 50 1 2.1262 -5.4050 10.0202 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088853837.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:09 Heat of formation + Delta-G solvation = 48.967156 kcal Electronic energy + Delta-G solvation = -28516.535418 eV Core-core repulsion = 24580.330904 eV Total energy + Delta-G solvation = -3936.204513 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.23434 -40.80465 -39.08499 -38.12696 -35.66107 -35.17282 -33.80489 -32.17746 -31.97037 -30.72559 -30.03705 -28.01386 -26.74683 -25.85234 -25.56259 -24.33532 -22.81512 -22.14892 -21.49683 -21.24351 -20.87890 -19.04216 -18.66118 -17.50945 -17.22451 -17.12549 -16.65075 -16.24710 -15.88431 -15.78968 -15.58989 -15.52045 -15.02963 -14.82238 -14.57409 -14.32030 -14.09339 -13.98275 -13.70888 -13.30026 -13.21805 -13.17260 -12.95595 -12.90769 -12.74302 -12.59661 -12.55406 -12.26395 -12.21203 -12.09443 -11.95821 -11.91872 -11.57854 -11.55678 -11.50665 -11.44106 -11.24731 -11.18008 -10.71195 -10.39177 -9.97913 -8.87673 -7.72858 -5.17502 0.16260 0.62173 1.10197 1.49352 1.50911 1.59385 2.07771 2.24365 2.53701 3.17493 3.32089 3.37658 3.60638 3.76426 3.80561 3.85303 3.96028 3.98334 3.99721 4.04265 4.22243 4.24821 4.33593 4.47945 4.52489 4.62289 4.65045 4.71219 4.74432 4.82256 4.83739 4.88574 4.96811 4.98425 5.06102 5.07463 5.11047 5.13735 5.31076 5.36466 5.43418 5.47405 5.50945 5.52254 5.60623 5.63033 5.82514 6.32749 6.44173 6.91204 7.13488 7.14342 7.80809 8.44575 9.29151 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.032033 B = 0.001871 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.881223 B =14959.643405 C =15235.015919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.087 4.087 3 C -0.151 4.151 4 C -0.124 4.124 5 C 0.110 3.890 6 N -0.347 5.347 7 C 0.112 3.888 8 C -0.123 4.123 9 C 0.606 3.394 10 O -0.567 6.567 11 N -0.695 5.695 12 C 0.154 3.846 13 H 0.089 0.911 14 C -0.138 4.138 15 C 0.158 3.842 16 N -0.613 5.613 17 C -0.227 4.227 18 H 0.084 0.916 19 C -0.069 4.069 20 N -0.950 5.950 21 Si 0.979 3.021 22 H -0.289 1.289 23 H -0.296 1.296 24 H -0.269 1.269 25 C 0.150 3.850 26 H 0.046 0.954 27 C -0.146 4.146 28 N -0.227 5.227 29 N -0.085 5.085 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.114 0.886 40 H 0.139 0.861 41 H 0.238 0.762 42 H 0.412 0.588 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.077 0.923 46 H -0.010 1.010 47 H 0.246 0.754 48 H 0.047 0.953 49 H 0.069 0.931 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.818 21.681 -23.878 33.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.106 4.106 3 C -0.208 4.208 4 C -0.162 4.162 5 C -0.008 4.008 6 N -0.131 5.131 7 C -0.046 4.046 8 C -0.263 4.263 9 C 0.392 3.608 10 O -0.445 6.445 11 N -0.345 5.345 12 C 0.049 3.951 13 H 0.107 0.893 14 C -0.178 4.178 15 C 0.033 3.967 16 N -0.338 5.338 17 C -0.356 4.356 18 H 0.102 0.898 19 C -0.261 4.261 20 N -0.600 5.600 21 Si 0.807 3.193 22 H -0.216 1.216 23 H -0.222 1.222 24 H -0.194 1.194 25 C 0.043 3.957 26 H 0.063 0.937 27 C -0.205 4.205 28 N -0.100 5.100 29 N -0.065 5.065 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.133 0.867 40 H 0.157 0.843 41 H 0.254 0.746 42 H 0.249 0.751 43 H 0.083 0.917 44 H 0.090 0.910 45 H 0.095 0.905 46 H 0.008 0.992 47 H 0.056 0.944 48 H 0.066 0.934 49 H 0.087 0.913 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.117 21.767 -23.948 33.135 hybrid contribution 0.023 -0.789 1.127 1.376 sum -7.094 20.978 -22.821 31.799 Atomic orbital electron populations 1.21979 0.94217 1.02756 1.02287 1.21030 0.96518 0.96169 0.96920 1.21848 1.00989 0.95846 1.02114 1.21909 1.02069 0.92477 0.99759 1.22667 1.02678 0.92704 0.82777 1.50830 1.06777 1.34765 1.20769 1.23844 1.00929 0.91553 0.88306 1.21369 0.90739 1.11647 1.02523 1.16966 0.84649 0.78353 0.80853 1.90779 1.19528 1.58429 1.75806 1.45722 1.11951 1.51805 1.25003 1.21799 0.98260 0.89899 0.85186 0.89335 1.23210 1.01191 0.95134 0.98278 1.21671 0.90948 0.95823 0.88263 1.44718 1.43140 1.04190 1.41798 1.19390 1.12424 0.93883 1.09859 0.89828 1.25605 1.01666 0.96204 1.02665 1.70044 1.42346 1.02141 1.45462 0.85069 0.78660 0.76869 0.78678 1.21600 1.22235 1.19381 1.21180 0.95567 0.86477 0.92509 0.93671 1.22113 1.00661 0.98583 0.99143 1.74639 1.20927 1.06701 1.07739 1.81889 0.97537 1.19653 1.07445 0.92861 0.92025 0.91176 0.89683 0.92932 0.91752 0.93047 0.91729 0.91557 0.86747 0.84349 0.74596 0.75132 0.91713 0.90961 0.90521 0.99200 0.94446 0.93392 0.91254 0.94034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.48 8.95 71.98 0.64 0.17 16 2 C -0.09 -0.39 2.92 -10.79 -0.03 -0.43 16 3 C -0.15 -0.95 9.19 71.98 0.66 -0.29 16 4 C -0.12 -0.92 4.89 30.59 0.15 -0.77 16 5 C 0.11 0.67 6.30 86.38 0.54 1.22 16 6 N -0.35 -5.32 3.69 -347.10 -1.28 -6.60 16 7 C 0.11 1.90 11.27 83.85 0.95 2.85 16 8 C -0.12 -3.12 6.99 40.82 0.29 -2.83 16 9 C 0.61 18.63 7.81 86.69 0.68 19.30 16 10 O -0.57 -19.88 16.59 -4.00 -0.07 -19.95 16 11 N -0.70 -22.00 5.20 -440.08 -2.29 -24.29 16 12 C 0.15 5.72 2.76 46.18 0.13 5.85 16 13 H 0.09 3.42 7.40 -2.39 -0.02 3.40 16 14 C -0.14 -5.68 6.77 31.99 0.22 -5.46 16 15 C 0.16 8.08 5.88 86.86 0.51 8.59 16 16 N -0.61 -31.46 3.13 -668.23 -2.09 -33.55 16 17 C -0.23 -12.59 9.86 84.03 0.83 -11.76 16 18 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 19 C -0.07 -3.94 5.49 84.86 0.47 -3.47 16 20 N -0.95 -57.16 10.09 21.65 0.22 -56.94 16 21 Si 0.98 46.09 29.55 68.60 2.03 48.12 16 22 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 23 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 25 C 0.15 6.12 3.48 45.34 0.16 6.28 16 26 H 0.05 1.81 7.70 -2.39 -0.02 1.79 16 27 C -0.15 -5.40 9.14 71.98 0.66 -4.75 16 28 N -0.23 -6.14 12.04 -50.00 -0.60 -6.74 16 29 N -0.08 -1.98 13.65 37.02 0.51 -1.48 16 30 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.07 0.03 6.57 -2.38 -0.02 0.01 16 33 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 34 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.14 0.00 6.51 -2.39 -0.02 -0.01 16 41 H 0.24 2.25 8.06 -2.91 -0.02 2.23 16 42 H 0.41 12.17 8.01 -92.71 -0.74 11.43 16 43 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 44 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 45 H 0.08 4.42 5.89 -2.39 -0.01 4.41 16 46 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 47 H 0.25 14.42 8.31 -92.70 -0.77 13.65 16 48 H 0.05 1.83 8.02 -2.39 -0.02 1.81 16 49 H 0.07 2.13 8.14 -2.38 -0.02 2.12 16 50 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -72.72 405.23 3.45 -69.27 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 0.19 Total: 17.67 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: 6.84 Total: 14.48 kcal Atomic # 7 Polarization: -124.06 SS G_CDS: -5.54 Total: -129.60 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.07 Total: -19.95 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -72.72 3.45 -69.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088853837.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.241 kcal (2) G-P(sol) polarization free energy of solvation -72.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds