Wall clock time and date at job start Wed Apr 1 2020 00:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.00238 * 2 1 4 4 C 1.54327 * 109.88588 * 238.89697 * 2 1 3 5 5 H 1.09000 * 110.71712 * 336.93566 * 4 2 1 6 6 N 1.46499 * 110.71503 * 100.02745 * 4 2 1 7 7 C 1.34784 * 119.99893 * 202.56114 * 6 4 2 8 8 O 1.21597 * 119.99617 * 359.97438 * 7 6 4 9 9 C 1.47425 * 120.00099 * 179.72619 * 7 6 4 10 10 C 1.41294 * 126.41351 * 0.02853 * 9 7 6 11 11 N 1.30452 * 108.02293 * 179.97438 * 10 9 7 12 12 N 1.39934 * 108.89440 * 359.97438 * 11 10 9 13 13 C 1.46499 * 125.74979 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.47145 * 304.97286 * 13 12 11 15 15 N 1.46906 * 109.47105 * 180.02562 * 14 13 12 16 16 C 1.46904 * 110.99978 * 169.99933 * 15 14 13 17 17 C 1.46897 * 110.99830 * 293.95279 * 15 14 13 18 18 C 1.34262 * 108.49497 * 359.76498 * 12 11 10 19 19 C 1.55155 * 103.10432 * 218.48019 * 4 2 1 20 20 C 1.54913 * 101.58038 * 35.41333 * 19 4 2 21 21 N 1.47325 * 110.06377 * 121.16690 * 2 1 3 22 22 C 1.36935 * 125.61324 * 298.32720 * 21 2 1 23 23 H 1.07997 * 120.00508 * 359.79012 * 22 21 2 24 24 C 1.38821 * 119.99768 * 179.79495 * 22 21 2 25 25 N 1.31616 * 119.99746 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99974 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47058 * 59.99741 * 26 24 22 28 28 H 1.48496 * 109.47296 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47057 * 300.00098 * 26 24 22 30 30 H 1.09003 * 109.47091 * 181.09956 * 1 2 3 31 31 H 1.08992 * 109.47526 * 301.10065 * 1 2 3 32 32 H 1.09003 * 109.46631 * 61.10050 * 1 2 3 33 33 H 0.97005 * 120.00261 * 22.56326 * 6 4 2 34 34 H 1.07996 * 125.98746 * 359.93422 * 10 9 7 35 35 H 1.08995 * 109.47551 * 64.97831 * 13 12 11 36 36 H 1.09002 * 109.46839 * 184.97439 * 13 12 11 37 37 H 1.09007 * 109.47226 * 300.00006 * 14 13 12 38 38 H 1.08995 * 109.46904 * 60.00012 * 14 13 12 39 39 H 1.08998 * 109.46621 * 59.99688 * 16 15 14 40 40 H 1.08994 * 109.46747 * 180.02562 * 16 15 14 41 41 H 1.08998 * 109.46828 * 299.99969 * 16 15 14 42 42 H 1.09008 * 109.46909 * 60.00544 * 17 15 14 43 43 H 1.08996 * 109.46955 * 179.97438 * 17 15 14 44 44 H 1.08995 * 109.47176 * 299.99853 * 17 15 14 45 45 H 1.07993 * 126.29477 * 180.22696 * 18 12 11 46 46 H 1.08999 * 111.00075 * 153.49043 * 19 4 2 47 47 H 1.08999 * 111.00356 * 277.34164 * 19 4 2 48 48 H 1.08998 * 110.36209 * 81.83072 * 20 19 4 49 49 H 1.09000 * 110.36387 * 204.14811 * 20 19 4 50 50 H 0.96998 * 119.99487 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7497 -1.2426 5 1 1.3040 -1.4438 -1.6200 6 7 2.4556 0.1959 -2.2874 7 6 2.5057 -0.2028 -3.5740 8 8 2.2188 -1.3475 -3.8673 9 6 2.9030 0.7503 -4.6261 10 6 3.2577 2.1053 -4.4399 11 7 3.5453 2.6113 -5.6074 12 7 3.3912 1.6189 -6.5819 13 6 3.6193 1.7878 -8.0191 14 6 2.7733 2.9530 -8.5363 15 7 3.0016 3.1220 -9.9776 16 6 2.0381 4.0683 -10.5558 17 6 4.3821 3.5464 -10.2457 18 6 3.0046 0.4843 -5.9769 19 6 3.2870 -1.5178 -0.6956 20 6 2.8161 -1.8830 0.7343 21 7 2.0354 -0.7162 1.1841 22 6 1.8128 -0.3591 2.4872 23 1 1.2243 0.5176 2.7140 24 6 2.3437 -1.1240 3.5168 25 7 3.0606 -2.1926 3.2405 26 14 2.0407 -0.6366 5.2944 27 1 0.5806 -0.6345 5.5651 28 1 2.7103 -1.6087 6.1954 29 1 2.5907 0.7215 5.5360 30 1 -0.3633 -1.0275 0.0197 31 1 -0.3634 0.5308 0.8799 32 1 -0.3633 0.4967 -0.8997 33 1 2.6848 1.1089 -2.0533 34 1 3.2852 2.6302 -3.4965 35 1 4.6739 1.9972 -8.1975 36 1 3.3370 0.8738 -8.5416 37 1 1.7185 2.7435 -8.3579 38 1 3.0556 3.8669 -8.0137 39 1 2.1443 5.0377 -10.0691 40 1 2.2294 4.1744 -11.6236 41 1 1.0257 3.6943 -10.4038 42 1 5.0736 2.7930 -9.8683 43 1 4.5240 3.6636 -11.3201 44 1 4.5731 4.4970 -9.7479 45 1 2.8066 -0.4616 -6.4587 46 1 3.4811 -2.4146 -1.2840 47 1 4.1664 -0.8746 -0.6649 48 1 2.1880 -2.7736 0.7109 49 1 3.6742 -2.0401 1.3878 50 1 3.4313 -2.7273 3.9600 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088912477.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:06 Heat of formation + Delta-G solvation = 79.162457 kcal Electronic energy + Delta-G solvation = -28508.225005 eV Core-core repulsion = 24573.329858 eV Total energy + Delta-G solvation = -3934.895147 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 4.35 seconds Orbital eigenvalues (eV) -41.55828 -39.25682 -38.18753 -37.32302 -34.11709 -33.74342 -31.95839 -30.60609 -30.31215 -29.50403 -28.36719 -28.15712 -25.42132 -24.56804 -23.94304 -22.64029 -22.05542 -20.84007 -20.30202 -19.94713 -19.48070 -17.94440 -16.72745 -16.45924 -16.31430 -15.82561 -15.68059 -15.26436 -15.00916 -14.70090 -14.44419 -14.22959 -13.92959 -13.87955 -13.59873 -13.26199 -12.99748 -12.94552 -12.70816 -12.54260 -12.30493 -12.16469 -12.08165 -11.90458 -11.70838 -11.51573 -11.18131 -11.09598 -10.82016 -10.78401 -10.47447 -10.33908 -10.09299 -9.81699 -9.70660 -9.61980 -9.49223 -9.02702 -8.89804 -8.62991 -8.45303 -6.83921 -5.62085 -3.04748 1.40656 1.99358 2.07606 3.37694 3.41860 3.45500 3.47497 3.54020 3.62992 4.12031 4.24537 4.50936 4.53135 4.58357 4.65947 4.73823 4.83681 4.94971 4.98282 5.08044 5.15363 5.23661 5.33130 5.34432 5.36743 5.39131 5.46065 5.60625 5.63384 5.69755 5.89472 6.17338 6.21301 6.30468 6.31685 6.33671 6.37661 6.42662 6.59846 6.61429 6.67978 6.78847 6.92795 7.18692 7.32559 7.56807 7.65422 7.87544 7.89779 8.38444 8.56839 9.23952 9.84729 10.49183 11.41052 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.031383 B = 0.001853 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.981718 B =15103.784736 C =15308.739919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.154 3.846 3 H 0.036 0.964 4 C 0.138 3.862 5 H 0.092 0.908 6 N -0.711 5.711 7 C 0.593 3.407 8 O -0.553 6.553 9 C -0.286 4.286 10 C 0.083 3.917 11 N -0.300 5.300 12 N -0.364 5.364 13 C 0.135 3.865 14 C 0.043 3.957 15 N -0.546 5.546 16 C 0.025 3.975 17 C 0.016 3.984 18 C 0.128 3.872 19 C -0.153 4.153 20 C 0.153 3.847 21 N -0.595 5.595 22 C -0.220 4.220 23 H 0.077 0.923 24 C -0.011 4.011 25 N -0.921 5.921 26 Si 0.914 3.086 27 H -0.286 1.286 28 H -0.290 1.290 29 H -0.286 1.286 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.038 0.962 33 H 0.396 0.604 34 H 0.190 0.810 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.054 0.946 39 H 0.029 0.971 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.030 0.970 45 H 0.188 0.812 46 H 0.061 0.939 47 H 0.061 0.939 48 H 0.014 0.986 49 H 0.109 0.891 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.347 11.266 -26.651 28.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.046 3.954 3 H 0.054 0.946 4 C 0.033 3.967 5 H 0.110 0.890 6 N -0.361 5.361 7 C 0.379 3.621 8 O -0.432 6.432 9 C -0.301 4.301 10 C -0.105 4.105 11 N -0.119 5.119 12 N -0.143 5.143 13 C 0.013 3.987 14 C -0.086 4.086 15 N -0.270 5.270 16 C -0.123 4.123 17 C -0.132 4.132 18 C -0.023 4.023 19 C -0.192 4.192 20 C 0.028 3.972 21 N -0.320 5.320 22 C -0.348 4.348 23 H 0.095 0.905 24 C -0.206 4.206 25 N -0.569 5.569 26 Si 0.744 3.256 27 H -0.213 1.213 28 H -0.216 1.216 29 H -0.212 1.212 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.230 0.770 34 H 0.207 0.793 35 H 0.107 0.893 36 H 0.126 0.874 37 H 0.100 0.900 38 H 0.072 0.928 39 H 0.047 0.953 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.049 0.951 45 H 0.205 0.795 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.032 0.968 49 H 0.126 0.874 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.524 10.984 -27.635 29.777 hybrid contribution -0.243 0.745 1.860 2.019 sum 1.280 11.729 -25.775 28.347 Atomic orbital electron populations 1.22228 0.97890 1.01435 0.99889 1.21055 0.92531 0.94810 0.86970 0.94605 1.22125 0.97579 0.90742 0.86242 0.88968 1.45834 1.68994 1.14965 1.06268 1.17179 0.76792 0.86343 0.81742 1.90758 1.50484 1.19504 1.82502 1.20368 1.20116 0.95781 0.93819 1.24116 0.96325 0.93068 0.96948 1.77129 1.24818 1.13151 0.96829 1.48444 1.51112 1.07541 1.07243 1.21760 1.01400 1.01313 0.74215 1.22337 1.00650 0.97790 0.87825 1.61925 1.04310 1.48458 1.12350 1.22389 0.96272 0.93638 0.99997 1.22517 0.89213 0.99390 1.02059 1.22981 0.94678 0.91893 0.92743 1.23395 0.96820 0.99361 0.99668 1.21947 0.97370 0.88309 0.89581 1.44556 1.59284 1.28178 1.00030 1.18980 1.27237 1.08012 0.80573 0.90540 1.24786 1.00467 0.97403 0.97994 1.69790 1.39202 1.17679 1.30258 0.86165 0.77606 0.77380 0.84399 1.21273 1.21624 1.21233 0.92932 0.92789 0.94267 0.77003 0.79291 0.89333 0.87356 0.89979 0.92811 0.95286 0.90912 0.91077 0.91055 0.90950 0.95119 0.79503 0.92000 0.92008 0.96824 0.87374 0.93687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.15 37.16 0.34 -2.55 16 2 C 0.15 3.10 3.49 -66.79 -0.23 2.86 16 3 H 0.04 0.70 7.70 -51.93 -0.40 0.30 16 4 C 0.14 2.54 2.79 -66.10 -0.18 2.35 16 5 H 0.09 1.83 7.33 -51.93 -0.38 1.45 16 6 N -0.71 -10.70 5.18 -53.10 -0.28 -10.97 16 7 C 0.59 9.20 7.81 -12.52 -0.10 9.10 16 8 O -0.55 -10.49 16.58 5.28 0.09 -10.41 16 9 C -0.29 -3.56 6.13 -105.07 -0.64 -4.20 16 10 C 0.08 0.91 11.50 -16.98 -0.20 0.71 16 11 N -0.30 -3.36 12.33 30.86 0.38 -2.98 16 12 N -0.36 -3.47 3.65 -60.81 -0.22 -3.69 16 13 C 0.13 0.87 6.41 -4.04 -0.03 0.84 16 14 C 0.04 0.28 5.13 -3.82 -0.02 0.26 16 15 N -0.55 -3.23 5.02 -251.26 -1.26 -4.49 16 16 C 0.03 0.12 9.57 60.07 0.57 0.70 16 17 C 0.02 0.08 9.32 60.06 0.56 0.64 16 18 C 0.13 1.34 11.25 -16.56 -0.19 1.16 16 19 C -0.15 -3.07 6.77 -24.58 -0.17 -3.24 16 20 C 0.15 3.75 5.89 -2.53 -0.01 3.73 16 21 N -0.60 -14.83 3.14 -162.35 -0.51 -15.34 16 22 C -0.22 -5.97 9.91 -15.06 -0.15 -6.12 16 23 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 24 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 25 N -0.92 -26.69 10.09 55.49 0.56 -26.13 16 26 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 27 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 29 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.05 1.03 8.06 -51.93 -0.42 0.61 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.40 4.93 7.29 -40.82 -0.30 4.63 16 34 H 0.19 1.55 7.50 -52.49 -0.39 1.15 16 35 H 0.09 0.52 6.55 -51.93 -0.34 0.18 16 36 H 0.11 0.52 8.06 -51.93 -0.42 0.10 16 37 H 0.08 0.59 8.06 -51.93 -0.42 0.17 16 38 H 0.05 0.43 8.12 -51.93 -0.42 0.01 16 39 H 0.03 0.15 8.14 -51.93 -0.42 -0.28 16 40 H 0.07 0.29 8.12 -51.93 -0.42 -0.13 16 41 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 42 H 0.07 0.30 6.47 -51.92 -0.34 -0.04 16 43 H 0.07 0.28 8.12 -51.93 -0.42 -0.14 16 44 H 0.03 0.16 8.14 -51.93 -0.42 -0.27 16 45 H 0.19 1.58 8.06 -52.49 -0.42 1.16 16 46 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 48 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.11 2.96 5.88 -51.93 -0.31 2.66 16 50 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 404.06 15.07 6.09 6.09 Total: -1.00 -33.31 404.06 -9.04 -42.35 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -8.32 Total: 2.83 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -0.54 Total: 5.84 kcal Atomic # 7 Polarization: -62.28 SS G_CDS: -1.33 Total: -63.61 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.31 -9.04 -42.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088912477.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.509 kcal (2) G-P(sol) polarization free energy of solvation -33.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.35 seconds