Wall clock time and date at job start Wed Apr 1 2020 00:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.00238 * 2 1 4 4 C 1.54327 * 109.88588 * 238.89697 * 2 1 3 5 5 H 1.09000 * 110.71712 * 336.93566 * 4 2 1 6 6 N 1.46499 * 110.71503 * 100.02745 * 4 2 1 7 7 C 1.34784 * 119.99893 * 202.56114 * 6 4 2 8 8 O 1.21597 * 119.99617 * 359.97438 * 7 6 4 9 9 C 1.47425 * 120.00099 * 179.72619 * 7 6 4 10 10 C 1.41294 * 126.41351 * 0.02853 * 9 7 6 11 11 N 1.30452 * 108.02293 * 179.97438 * 10 9 7 12 12 N 1.39934 * 108.89440 * 359.97438 * 11 10 9 13 13 C 1.46499 * 125.74979 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.47145 * 304.97286 * 13 12 11 15 15 N 1.46906 * 109.47105 * 180.02562 * 14 13 12 16 16 C 1.46904 * 110.99978 * 169.99933 * 15 14 13 17 17 C 1.46897 * 110.99830 * 293.95279 * 15 14 13 18 18 C 1.34262 * 108.49497 * 359.76498 * 12 11 10 19 19 C 1.55155 * 103.10432 * 218.48019 * 4 2 1 20 20 C 1.54913 * 101.58038 * 35.41333 * 19 4 2 21 21 N 1.47325 * 110.06377 * 121.16690 * 2 1 3 22 22 C 1.36935 * 125.61324 * 298.32720 * 21 2 1 23 23 H 1.07997 * 120.00508 * 359.79012 * 22 21 2 24 24 C 1.38821 * 119.99768 * 179.79495 * 22 21 2 25 25 N 1.31616 * 119.99746 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99974 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47058 * 59.99741 * 26 24 22 28 28 H 1.48496 * 109.47296 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47057 * 300.00098 * 26 24 22 30 30 H 1.09003 * 109.47091 * 181.09956 * 1 2 3 31 31 H 1.08992 * 109.47526 * 301.10065 * 1 2 3 32 32 H 1.09003 * 109.46631 * 61.10050 * 1 2 3 33 33 H 0.97005 * 120.00261 * 22.56326 * 6 4 2 34 34 H 1.07996 * 125.98746 * 359.93422 * 10 9 7 35 35 H 1.08995 * 109.47551 * 64.97831 * 13 12 11 36 36 H 1.09002 * 109.46839 * 184.97439 * 13 12 11 37 37 H 1.09007 * 109.47226 * 300.00006 * 14 13 12 38 38 H 1.08995 * 109.46904 * 60.00012 * 14 13 12 39 39 H 1.08998 * 109.46621 * 59.99688 * 16 15 14 40 40 H 1.08994 * 109.46747 * 180.02562 * 16 15 14 41 41 H 1.08998 * 109.46828 * 299.99969 * 16 15 14 42 42 H 1.09008 * 109.46909 * 60.00544 * 17 15 14 43 43 H 1.08996 * 109.46955 * 179.97438 * 17 15 14 44 44 H 1.08995 * 109.47176 * 299.99853 * 17 15 14 45 45 H 1.07993 * 126.29477 * 180.22696 * 18 12 11 46 46 H 1.08999 * 111.00075 * 153.49043 * 19 4 2 47 47 H 1.08999 * 111.00356 * 277.34164 * 19 4 2 48 48 H 1.08998 * 110.36209 * 81.83072 * 20 19 4 49 49 H 1.09000 * 110.36387 * 204.14811 * 20 19 4 50 50 H 0.96998 * 119.99487 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7497 -1.2426 5 1 1.3040 -1.4438 -1.6200 6 7 2.4556 0.1959 -2.2874 7 6 2.5057 -0.2028 -3.5740 8 8 2.2188 -1.3475 -3.8673 9 6 2.9030 0.7503 -4.6261 10 6 3.2577 2.1053 -4.4399 11 7 3.5453 2.6113 -5.6074 12 7 3.3912 1.6189 -6.5819 13 6 3.6193 1.7878 -8.0191 14 6 2.7733 2.9530 -8.5363 15 7 3.0016 3.1220 -9.9776 16 6 2.0381 4.0683 -10.5558 17 6 4.3821 3.5464 -10.2457 18 6 3.0046 0.4843 -5.9769 19 6 3.2870 -1.5178 -0.6956 20 6 2.8161 -1.8830 0.7343 21 7 2.0354 -0.7162 1.1841 22 6 1.8128 -0.3591 2.4872 23 1 1.2243 0.5176 2.7140 24 6 2.3437 -1.1240 3.5168 25 7 3.0606 -2.1926 3.2405 26 14 2.0407 -0.6366 5.2944 27 1 0.5806 -0.6345 5.5651 28 1 2.7103 -1.6087 6.1954 29 1 2.5907 0.7215 5.5360 30 1 -0.3633 -1.0275 0.0197 31 1 -0.3634 0.5308 0.8799 32 1 -0.3633 0.4967 -0.8997 33 1 2.6848 1.1089 -2.0533 34 1 3.2852 2.6302 -3.4965 35 1 4.6739 1.9972 -8.1975 36 1 3.3370 0.8738 -8.5416 37 1 1.7185 2.7435 -8.3579 38 1 3.0556 3.8669 -8.0137 39 1 2.1443 5.0377 -10.0691 40 1 2.2294 4.1744 -11.6236 41 1 1.0257 3.6943 -10.4038 42 1 5.0736 2.7930 -9.8683 43 1 4.5240 3.6636 -11.3201 44 1 4.5731 4.4970 -9.7479 45 1 2.8066 -0.4616 -6.4587 46 1 3.4811 -2.4146 -1.2840 47 1 4.1664 -0.8746 -0.6649 48 1 2.1880 -2.7736 0.7109 49 1 3.6742 -2.0401 1.3878 50 1 3.4313 -2.7273 3.9600 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088912477.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:02 Heat of formation + Delta-G solvation = 55.886756 kcal Electronic energy + Delta-G solvation = -28509.234315 eV Core-core repulsion = 24573.329858 eV Total energy + Delta-G solvation = -3935.904457 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 12.11 seconds Orbital eigenvalues (eV) -42.39179 -40.60828 -38.98020 -38.60095 -35.53998 -34.64619 -33.70063 -32.02337 -31.46447 -30.65503 -29.74236 -28.53749 -26.68068 -25.83762 -25.46421 -23.72668 -22.66018 -21.97964 -21.66020 -21.29421 -20.79109 -18.91400 -18.63537 -17.37506 -17.13760 -16.99981 -16.58199 -16.28097 -15.94340 -15.82489 -15.66548 -15.45589 -15.33026 -14.92189 -14.64773 -14.39493 -14.21901 -13.95157 -13.82305 -13.60780 -13.39204 -13.19371 -13.00877 -12.90114 -12.70282 -12.68708 -12.60560 -12.56586 -12.30409 -12.19159 -12.06666 -11.99121 -11.88249 -11.53338 -11.39155 -10.85637 -10.68638 -10.58482 -10.03957 -9.61852 -9.46926 -8.85946 -7.70979 -5.15710 0.54432 1.17828 1.29994 1.50215 1.53023 1.59127 2.28652 2.51196 2.56782 2.91532 3.39046 3.47528 3.64689 3.74882 3.83060 3.90449 3.94918 4.02631 4.13713 4.22081 4.25717 4.28222 4.37465 4.44912 4.55100 4.57780 4.64978 4.66547 4.68726 4.74003 4.78765 4.83051 4.86920 4.98872 5.01670 5.02232 5.11288 5.19002 5.40812 5.42193 5.53912 5.64545 5.70512 5.76762 5.84324 5.90305 5.97481 6.34368 6.50229 6.71832 7.14874 7.37209 7.82717 8.46729 9.30615 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.031383 B = 0.001853 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.981718 B =15103.784736 C =15308.739919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.150 3.850 3 H 0.054 0.946 4 C 0.156 3.844 5 H 0.079 0.921 6 N -0.701 5.701 7 C 0.596 3.404 8 O -0.592 6.592 9 C -0.310 4.310 10 C 0.088 3.912 11 N -0.318 5.318 12 N -0.357 5.357 13 C 0.131 3.869 14 C 0.051 3.949 15 N -0.551 5.551 16 C 0.023 3.977 17 C 0.015 3.985 18 C 0.138 3.862 19 C -0.138 4.138 20 C 0.158 3.842 21 N -0.613 5.613 22 C -0.226 4.226 23 H 0.085 0.915 24 C -0.071 4.071 25 N -0.951 5.951 26 Si 0.978 3.022 27 H -0.280 1.280 28 H -0.298 1.298 29 H -0.276 1.276 30 H 0.035 0.965 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.411 0.589 34 H 0.212 0.788 35 H 0.098 0.902 36 H 0.129 0.871 37 H 0.075 0.925 38 H 0.037 0.963 39 H 0.025 0.975 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.025 0.975 45 H 0.207 0.793 46 H 0.064 0.936 47 H 0.069 0.931 48 H -0.016 1.016 49 H 0.077 0.923 50 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.223 13.145 -28.444 31.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.044 3.956 3 H 0.072 0.928 4 C 0.050 3.950 5 H 0.097 0.903 6 N -0.352 5.352 7 C 0.385 3.615 8 O -0.474 6.474 9 C -0.325 4.325 10 C -0.100 4.100 11 N -0.138 5.138 12 N -0.135 5.135 13 C 0.010 3.990 14 C -0.078 4.078 15 N -0.275 5.275 16 C -0.124 4.124 17 C -0.133 4.133 18 C -0.015 4.015 19 C -0.178 4.178 20 C 0.032 3.968 21 N -0.339 5.339 22 C -0.355 4.355 23 H 0.103 0.897 24 C -0.263 4.263 25 N -0.601 5.601 26 Si 0.807 3.193 27 H -0.207 1.207 28 H -0.224 1.224 29 H -0.202 1.202 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.248 0.752 34 H 0.229 0.771 35 H 0.116 0.884 36 H 0.147 0.853 37 H 0.094 0.906 38 H 0.056 0.944 39 H 0.044 0.956 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.043 0.957 45 H 0.223 0.777 46 H 0.083 0.917 47 H 0.088 0.912 48 H 0.002 0.998 49 H 0.095 0.905 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.396 12.942 -29.477 32.223 hybrid contribution -0.207 0.196 2.273 2.291 sum 1.189 13.139 -27.204 30.234 Atomic orbital electron populations 1.22115 0.96551 1.00705 1.01191 1.21262 0.93455 0.95156 0.85775 0.92808 1.21681 0.96104 0.90784 0.86452 0.90263 1.45599 1.68919 1.15088 1.05563 1.17533 0.75709 0.86222 0.82009 1.90741 1.52302 1.21323 1.83025 1.20148 1.22624 0.95997 0.93730 1.24457 0.95307 0.92412 0.97777 1.77123 1.25417 1.13979 0.97234 1.48667 1.49885 1.06899 1.08070 1.22026 1.02014 1.02276 0.72637 1.22196 1.00198 0.97102 0.88278 1.61967 1.05035 1.48887 1.11621 1.22436 0.96173 0.93265 1.00569 1.22571 0.88700 0.99299 1.02718 1.23294 0.93111 0.92678 0.92378 1.23196 0.97770 0.99951 0.96886 1.21664 0.95718 0.87749 0.91646 1.44790 1.59761 1.28500 1.00831 1.19366 1.26404 1.07928 0.81785 0.89678 1.25612 1.00980 0.97771 1.01900 1.70044 1.40498 1.18802 1.30746 0.85150 0.77461 0.77074 0.79626 1.20668 1.22423 1.20160 0.94611 0.93376 0.91067 0.75196 0.77132 0.88370 0.85261 0.90619 0.94421 0.95637 0.89821 0.91014 0.90391 0.89971 0.95681 0.77672 0.91694 0.91237 0.99777 0.90499 0.94522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.25 9.15 71.98 0.66 -4.59 16 2 C 0.15 5.85 3.49 45.28 0.16 6.00 16 3 H 0.05 1.94 7.70 -2.39 -0.02 1.92 16 4 C 0.16 5.59 2.79 46.18 0.13 5.72 16 5 H 0.08 3.11 7.33 -2.39 -0.02 3.09 16 6 N -0.70 -19.76 5.18 -440.17 -2.28 -22.04 16 7 C 0.60 17.57 7.81 86.66 0.68 18.24 16 8 O -0.59 -21.95 16.58 -4.02 -0.07 -22.01 16 9 C -0.31 -7.08 6.13 -20.15 -0.12 -7.21 16 10 C 0.09 1.71 11.50 85.65 0.99 2.70 16 11 N -0.32 -6.46 12.33 -56.27 -0.69 -7.16 16 12 N -0.36 -5.98 3.65 -346.31 -1.26 -7.25 16 13 C 0.13 1.38 6.41 86.38 0.55 1.93 16 14 C 0.05 0.60 5.13 86.30 0.44 1.04 16 15 N -0.55 -5.52 5.02 -948.84 -4.76 -10.29 16 16 C 0.02 0.20 9.57 127.69 1.22 1.42 16 17 C 0.01 0.12 9.32 127.69 1.19 1.31 16 18 C 0.14 2.58 11.25 84.28 0.95 3.53 16 19 C -0.14 -5.57 6.77 31.99 0.22 -5.35 16 20 C 0.16 7.98 5.89 86.86 0.51 8.49 16 21 N -0.61 -30.74 3.14 -667.54 -2.10 -32.83 16 22 C -0.23 -12.29 9.91 84.04 0.83 -11.46 16 23 H 0.09 4.38 7.83 -2.91 -0.02 4.35 16 24 C -0.07 -3.96 5.49 84.86 0.47 -3.50 16 25 N -0.95 -56.84 10.09 21.65 0.22 -56.62 16 26 Si 0.98 45.44 29.55 68.60 2.03 47.47 16 27 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 28 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 29 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 30 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.05 1.76 8.06 -2.39 -0.02 1.74 16 32 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.41 9.13 7.29 -92.70 -0.68 8.46 16 34 H 0.21 2.84 7.50 -2.91 -0.02 2.82 16 35 H 0.10 0.89 6.55 -2.39 -0.02 0.88 16 36 H 0.13 0.85 8.06 -2.39 -0.02 0.83 16 37 H 0.08 0.98 8.06 -2.38 -0.02 0.96 16 38 H 0.04 0.56 8.12 -2.39 -0.02 0.54 16 39 H 0.02 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.08 0.52 8.12 -2.39 -0.02 0.50 16 41 H 0.07 0.59 8.12 -2.39 -0.02 0.57 16 42 H 0.08 0.49 6.47 -2.38 -0.02 0.47 16 43 H 0.08 0.48 8.12 -2.39 -0.02 0.46 16 44 H 0.02 0.22 8.14 -2.39 -0.02 0.20 16 45 H 0.21 2.97 8.06 -2.91 -0.02 2.94 16 46 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 47 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 48 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 49 H 0.08 4.40 5.88 -2.39 -0.01 4.38 16 50 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -72.83 404.06 0.20 -72.63 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 0.25 Total: 19.83 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: 8.87 Total: 18.27 kcal Atomic # 7 Polarization: -125.31 SS G_CDS: -10.88 Total: -136.19 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.07 Total: -22.01 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -72.83 0.20 -72.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088912477.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.516 kcal (2) G-P(sol) polarization free energy of solvation -72.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.11 seconds