Wall clock time and date at job start Wed Apr 1 2020 01:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 110.64412 * 2 1 4 4 C 1.54322 * 110.71873 * 236.85669 * 2 1 3 5 5 N 1.47016 * 107.27584 * 219.44305 * 4 2 1 6 6 C 1.36934 * 125.65257 * 178.90450 * 5 4 2 7 7 H 1.08001 * 120.00082 * 180.02562 * 6 5 4 8 8 C 1.38818 * 120.00056 * 0.02904 * 6 5 4 9 9 N 1.31621 * 119.99528 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00255 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46979 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46936 * 119.99940 * 10 8 6 13 13 H 1.48493 * 109.47316 * 239.99911 * 10 8 6 14 14 C 1.47425 * 108.70144 * 358.94568 * 5 4 2 15 15 C 1.54913 * 104.83172 * 24.12623 * 14 5 4 16 16 H 1.08993 * 111.00353 * 81.06953 * 15 14 5 17 17 C 1.53005 * 111.00185 * 204.91813 * 15 14 5 18 18 N 1.46490 * 109.47021 * 287.19367 * 17 15 14 19 19 C 1.34778 * 120.00109 * 179.97438 * 18 17 15 20 20 O 1.21598 * 120.00070 * 0.02562 * 19 18 17 21 21 C 1.47518 * 120.00408 * 179.97438 * 19 18 17 22 22 C 1.36600 * 125.77213 * 179.71693 * 21 19 18 23 23 N 1.34812 * 106.83959 * 179.90275 * 22 21 19 24 24 C 1.46500 * 126.59424 * 180.10861 * 23 22 21 25 25 C 1.52999 * 109.47031 * 75.27528 * 24 23 22 26 26 C 1.53001 * 109.47273 * 195.27161 * 24 23 22 27 27 C 1.52997 * 109.47036 * 315.27308 * 24 23 22 28 28 N 1.40216 * 106.81312 * 0.35833 * 23 22 21 29 29 N 1.28761 * 108.36076 * 359.77427 * 28 23 22 30 30 H 1.08994 * 109.47357 * 181.68934 * 1 2 3 31 31 H 1.08998 * 109.46865 * 301.68696 * 1 2 3 32 32 H 1.08994 * 109.46919 * 61.68521 * 1 2 3 33 33 H 1.09005 * 109.88278 * 338.86758 * 4 2 1 34 34 H 1.09005 * 109.88137 * 99.87244 * 4 2 1 35 35 H 0.97004 * 119.99644 * 179.97438 * 9 8 6 36 36 H 1.08996 * 110.36900 * 142.96779 * 14 5 4 37 37 H 1.08998 * 110.36632 * 265.28801 * 14 5 4 38 38 H 1.09004 * 109.47149 * 47.19798 * 17 15 14 39 39 H 1.08997 * 109.46866 * 167.19429 * 17 15 14 40 40 H 0.96998 * 120.00572 * 0.02562 * 18 17 15 41 41 H 1.07998 * 126.58113 * 0.04769 * 22 21 19 42 42 H 1.09002 * 109.47216 * 60.00388 * 25 24 23 43 43 H 1.09004 * 109.47461 * 180.02562 * 25 24 23 44 44 H 1.08996 * 109.47412 * 299.99843 * 25 24 23 45 45 H 1.09004 * 109.47102 * 60.00325 * 26 24 23 46 46 H 1.08998 * 109.47516 * 179.97438 * 26 24 23 47 47 H 1.09003 * 109.47278 * 300.00707 * 26 24 23 48 48 H 1.08996 * 109.46969 * 60.00426 * 27 24 23 49 49 H 1.09004 * 109.46874 * 179.97438 * 27 24 23 50 50 H 1.08996 * 109.47137 * 299.99891 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7892 -1.2086 5 7 3.2445 -1.5495 -0.7417 6 6 4.0034 -2.3955 -1.5056 7 1 4.8454 -2.9103 -1.0670 8 6 3.6905 -2.5915 -2.8438 9 7 2.6640 -1.9644 -3.3782 10 14 4.7261 -3.7449 -3.8860 11 1 5.8128 -4.3221 -3.0545 12 1 3.8710 -4.8395 -4.4114 13 1 5.3173 -2.9908 -5.0203 14 6 3.4633 -1.2511 0.6853 15 6 2.0790 -0.7976 1.2124 16 1 1.4452 -1.6561 1.4346 17 6 2.2279 0.1037 2.4398 18 7 2.6329 -0.7042 3.5926 19 6 2.8261 -0.1190 4.7912 20 8 2.6638 1.0797 4.9158 21 6 3.2334 -0.9326 5.9524 22 6 3.4659 -0.4635 7.2141 23 7 3.8111 -1.5261 7.9684 24 6 4.1506 -1.5122 9.3935 25 6 2.8734 -1.3522 10.2205 26 6 4.8385 -2.8268 9.7668 27 6 5.0944 -0.3429 9.6814 28 7 3.7884 -2.6464 7.1255 29 7 3.4443 -2.2599 5.9465 30 1 -0.3634 -1.0271 0.0303 31 1 -0.3633 0.5398 0.8745 32 1 -0.3633 0.4874 -0.9047 33 1 1.3129 -1.4731 -1.5801 34 1 2.3716 -0.0991 -1.9990 35 1 2.4455 -2.1011 -4.3133 36 1 3.7961 -2.1448 1.2131 37 1 4.1932 -0.4494 0.7976 38 1 2.9855 0.8625 2.2436 39 1 1.2750 0.5883 2.6524 40 1 2.7627 -1.6603 3.4933 41 1 3.3860 0.5616 7.5445 42 1 2.2010 -2.1853 10.0153 43 1 3.1259 -1.3414 11.2808 44 1 2.3832 -0.4157 9.9546 45 1 5.7485 -2.9408 9.1776 46 1 5.0916 -2.8163 10.8269 47 1 4.1662 -3.6598 9.5615 48 1 4.6043 0.5936 9.4156 49 1 5.3467 -0.3323 10.7418 50 1 6.0043 -0.4569 9.0923 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092663478.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:00:47 Heat of formation + Delta-G solvation = 71.752805 kcal Electronic energy + Delta-G solvation = -28854.597316 eV Core-core repulsion = 24919.380862 eV Total energy + Delta-G solvation = -3935.216453 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.48031 -39.44860 -37.97136 -37.69163 -34.63160 -32.91484 -32.26909 -31.15974 -30.66406 -29.14280 -28.15040 -28.05087 -25.98626 -25.21824 -24.02555 -23.53204 -22.32748 -21.00431 -20.17114 -19.92402 -19.09685 -17.84801 -16.80745 -16.50342 -16.35044 -15.95095 -15.24960 -14.98570 -14.86146 -14.70958 -14.41196 -14.18491 -13.76348 -13.59314 -13.24979 -13.16383 -13.01224 -12.89236 -12.81679 -12.51986 -12.46359 -12.41164 -12.02223 -11.76352 -11.70967 -11.63433 -11.37003 -11.33243 -11.14352 -10.77076 -10.72514 -10.58740 -10.26657 -10.02408 -9.91795 -9.84230 -9.67100 -9.50404 -9.48650 -8.86698 -8.54999 -6.76628 -5.65748 -2.98677 0.94491 1.61877 1.68760 3.21546 3.30272 3.43704 3.49287 3.51728 3.74694 4.00263 4.03338 4.12492 4.50920 4.54637 4.68234 4.78739 4.83681 4.95205 4.96827 5.02010 5.13557 5.15193 5.18104 5.28255 5.34008 5.39700 5.47369 5.54297 5.59075 5.62632 5.72243 5.82802 5.93250 6.09059 6.15926 6.17032 6.25594 6.35802 6.50829 6.54821 6.66488 6.69229 6.82608 7.02232 7.52693 7.63431 7.70278 7.83970 7.89913 8.23572 8.31939 9.28215 9.88462 10.54881 11.46009 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017376 B = 0.002217 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.045487 B =12626.703150 C =13780.925411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.110 4.110 3 H 0.068 0.932 4 C 0.184 3.816 5 N -0.607 5.607 6 C -0.225 4.225 7 H 0.078 0.922 8 C -0.011 4.011 9 N -0.922 5.922 10 Si 0.911 3.089 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.141 3.859 15 C -0.113 4.113 16 H 0.081 0.919 17 C 0.133 3.867 18 N -0.707 5.707 19 C 0.602 3.398 20 O -0.546 6.546 21 C -0.099 4.099 22 C 0.091 3.909 23 N -0.353 5.353 24 C 0.169 3.831 25 C -0.161 4.161 26 C -0.149 4.149 27 C -0.163 4.163 28 N -0.063 5.063 29 N -0.204 5.204 30 H 0.053 0.947 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.041 0.959 35 H 0.251 0.749 36 H 0.038 0.962 37 H 0.019 0.981 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.410 0.590 41 H 0.200 0.800 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.080 0.920 47 H 0.075 0.925 48 H 0.070 0.930 49 H 0.087 0.913 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.022 4.022 29.579 29.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 H 0.086 0.914 4 C 0.059 3.941 5 N -0.333 5.333 6 C -0.353 4.353 7 H 0.096 0.904 8 C -0.206 4.206 9 N -0.570 5.570 10 Si 0.742 3.258 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.015 3.985 15 C -0.133 4.133 16 H 0.100 0.900 17 C 0.010 3.990 18 N -0.357 5.357 19 C 0.386 3.614 20 O -0.423 6.423 21 C -0.238 4.238 22 C -0.066 4.066 23 N -0.139 5.139 24 C 0.087 3.913 25 C -0.219 4.219 26 C -0.207 4.207 27 C -0.222 4.222 28 N -0.042 5.042 29 N -0.078 5.078 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.037 0.963 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.246 0.754 41 H 0.217 0.783 42 H 0.088 0.912 43 H 0.104 0.896 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.099 0.901 47 H 0.094 0.906 48 H 0.089 0.911 49 H 0.106 0.894 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.101 3.271 29.353 29.535 hybrid contribution 0.478 0.025 -0.507 0.697 sum 0.578 3.296 28.846 29.040 Atomic orbital electron populations 1.21692 0.95341 1.01479 1.00657 1.22438 0.95133 0.99098 0.96341 0.91388 1.21210 0.89100 0.93098 0.90697 1.44472 1.32610 1.51495 1.04685 1.19113 1.07485 1.17492 0.91224 0.90436 1.24802 0.98495 1.00428 0.96923 1.69979 1.28827 1.45667 1.12525 0.86049 0.79292 0.80122 0.80354 1.20535 1.21814 1.21829 1.21598 0.92997 0.97210 0.86735 1.22686 0.99511 0.98106 0.92968 0.90021 1.21461 1.00240 0.93701 0.83632 1.45880 1.68259 1.12908 1.08636 1.16754 0.77115 0.86022 0.81553 1.90794 1.53047 1.13900 1.84607 1.21523 1.15622 0.91047 0.95636 1.23221 0.97016 0.95380 0.90936 1.50840 1.46042 1.06533 1.10463 1.21093 0.96752 0.99223 0.74243 1.22289 0.95779 1.03538 1.00318 1.22000 1.01532 0.94767 1.02391 1.22307 0.99344 0.96584 1.03926 1.81979 1.21541 1.06738 0.93963 1.74680 1.08994 1.10569 1.13521 0.92772 0.93677 0.92726 0.93338 0.94068 0.93884 0.94420 0.96314 0.91129 0.91380 0.75450 0.78304 0.91172 0.89628 0.91353 0.91149 0.90137 0.90565 0.91105 0.89381 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 9.13 37.16 0.34 -1.79 16 2 C -0.11 -2.04 3.01 -88.78 -0.27 -2.31 16 3 H 0.07 1.21 8.04 -51.93 -0.42 0.79 16 4 C 0.18 4.48 4.97 -3.07 -0.02 4.46 16 5 N -0.61 -15.73 3.39 -170.07 -0.58 -16.31 16 6 C -0.22 -6.39 10.28 -15.06 -0.15 -6.54 16 7 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 8 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 9 N -0.92 -27.47 10.31 55.49 0.57 -26.89 16 10 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 14 C 0.14 2.94 6.65 -2.53 -0.02 2.93 16 15 C -0.11 -1.95 2.50 -88.47 -0.22 -2.17 16 16 H 0.08 1.41 8.04 -51.93 -0.42 0.99 16 17 C 0.13 2.01 5.13 -4.04 -0.02 1.99 16 18 N -0.71 -10.21 5.50 -61.36 -0.34 -10.55 16 19 C 0.60 8.84 7.82 -12.48 -0.10 8.74 16 20 O -0.55 -9.12 16.86 5.28 0.09 -9.03 16 21 C -0.10 -1.28 6.99 -83.55 -0.58 -1.86 16 22 C 0.09 0.89 10.43 -16.83 -0.18 0.71 16 23 N -0.35 -3.17 3.44 -48.36 -0.17 -3.34 16 24 C 0.17 0.89 1.25 -131.82 -0.16 0.73 16 25 C -0.16 -0.62 8.74 37.16 0.32 -0.30 16 26 C -0.15 -0.73 8.11 37.16 0.30 -0.43 16 27 C -0.16 -0.57 8.30 37.16 0.31 -0.26 16 28 N -0.06 -0.77 12.91 60.35 0.78 0.01 16 29 N -0.20 -2.82 12.04 32.85 0.40 -2.42 16 30 H 0.05 0.88 8.13 -51.93 -0.42 0.46 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.05 1.30 7.06 -51.93 -0.37 0.94 16 34 H 0.04 1.12 7.51 -51.93 -0.39 0.73 16 35 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.02 0.40 7.91 -51.93 -0.41 -0.01 16 38 H 0.07 1.12 7.96 -51.93 -0.41 0.71 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.41 5.74 8.16 -40.82 -0.33 5.41 16 41 H 0.20 1.37 7.62 -52.49 -0.40 0.97 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 44 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 47 H 0.08 0.46 8.06 -51.93 -0.42 0.04 16 48 H 0.07 0.22 7.43 -51.93 -0.39 -0.17 16 49 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 50 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 405.74 15.07 6.11 6.11 Total: -1.00 -34.22 405.74 -7.27 -41.49 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -8.57 Total: -0.09 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -0.54 Total: 3.50 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: 0.67 Total: -59.50 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.09 Total: -9.03 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.22 -7.27 -41.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092663478.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.241 kcal (2) G-P(sol) polarization free energy of solvation -34.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds