Wall clock time and date at job start Wed Apr 1 2020 01:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 110.64412 * 2 1 4 4 C 1.54322 * 110.71873 * 236.85669 * 2 1 3 5 5 N 1.47016 * 107.27584 * 219.44305 * 4 2 1 6 6 C 1.36934 * 125.65257 * 178.90450 * 5 4 2 7 7 H 1.08001 * 120.00082 * 180.02562 * 6 5 4 8 8 C 1.38818 * 120.00056 * 0.02904 * 6 5 4 9 9 N 1.31621 * 119.99528 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00255 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46979 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46936 * 119.99940 * 10 8 6 13 13 H 1.48493 * 109.47316 * 239.99911 * 10 8 6 14 14 C 1.47425 * 108.70144 * 358.94568 * 5 4 2 15 15 C 1.54913 * 104.83172 * 24.12623 * 14 5 4 16 16 H 1.08993 * 111.00353 * 81.06953 * 15 14 5 17 17 C 1.53005 * 111.00185 * 204.91813 * 15 14 5 18 18 N 1.46490 * 109.47021 * 287.19367 * 17 15 14 19 19 C 1.34778 * 120.00109 * 179.97438 * 18 17 15 20 20 O 1.21598 * 120.00070 * 0.02562 * 19 18 17 21 21 C 1.47518 * 120.00408 * 179.97438 * 19 18 17 22 22 C 1.36600 * 125.77213 * 179.71693 * 21 19 18 23 23 N 1.34812 * 106.83959 * 179.90275 * 22 21 19 24 24 C 1.46500 * 126.59424 * 180.10861 * 23 22 21 25 25 C 1.52999 * 109.47031 * 75.27528 * 24 23 22 26 26 C 1.53001 * 109.47273 * 195.27161 * 24 23 22 27 27 C 1.52997 * 109.47036 * 315.27308 * 24 23 22 28 28 N 1.40216 * 106.81312 * 0.35833 * 23 22 21 29 29 N 1.28761 * 108.36076 * 359.77427 * 28 23 22 30 30 H 1.08994 * 109.47357 * 181.68934 * 1 2 3 31 31 H 1.08998 * 109.46865 * 301.68696 * 1 2 3 32 32 H 1.08994 * 109.46919 * 61.68521 * 1 2 3 33 33 H 1.09005 * 109.88278 * 338.86758 * 4 2 1 34 34 H 1.09005 * 109.88137 * 99.87244 * 4 2 1 35 35 H 0.97004 * 119.99644 * 179.97438 * 9 8 6 36 36 H 1.08996 * 110.36900 * 142.96779 * 14 5 4 37 37 H 1.08998 * 110.36632 * 265.28801 * 14 5 4 38 38 H 1.09004 * 109.47149 * 47.19798 * 17 15 14 39 39 H 1.08997 * 109.46866 * 167.19429 * 17 15 14 40 40 H 0.96998 * 120.00572 * 0.02562 * 18 17 15 41 41 H 1.07998 * 126.58113 * 0.04769 * 22 21 19 42 42 H 1.09002 * 109.47216 * 60.00388 * 25 24 23 43 43 H 1.09004 * 109.47461 * 180.02562 * 25 24 23 44 44 H 1.08996 * 109.47412 * 299.99843 * 25 24 23 45 45 H 1.09004 * 109.47102 * 60.00325 * 26 24 23 46 46 H 1.08998 * 109.47516 * 179.97438 * 26 24 23 47 47 H 1.09003 * 109.47278 * 300.00707 * 26 24 23 48 48 H 1.08996 * 109.46969 * 60.00426 * 27 24 23 49 49 H 1.09004 * 109.46874 * 179.97438 * 27 24 23 50 50 H 1.08996 * 109.47137 * 299.99891 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7892 -1.2086 5 7 3.2445 -1.5495 -0.7417 6 6 4.0034 -2.3955 -1.5056 7 1 4.8454 -2.9103 -1.0670 8 6 3.6905 -2.5915 -2.8438 9 7 2.6640 -1.9644 -3.3782 10 14 4.7261 -3.7449 -3.8860 11 1 5.8128 -4.3221 -3.0545 12 1 3.8710 -4.8395 -4.4114 13 1 5.3173 -2.9908 -5.0203 14 6 3.4633 -1.2511 0.6853 15 6 2.0790 -0.7976 1.2124 16 1 1.4452 -1.6561 1.4346 17 6 2.2279 0.1037 2.4398 18 7 2.6329 -0.7042 3.5926 19 6 2.8261 -0.1190 4.7912 20 8 2.6638 1.0797 4.9158 21 6 3.2334 -0.9326 5.9524 22 6 3.4659 -0.4635 7.2141 23 7 3.8111 -1.5261 7.9684 24 6 4.1506 -1.5122 9.3935 25 6 2.8734 -1.3522 10.2205 26 6 4.8385 -2.8268 9.7668 27 6 5.0944 -0.3429 9.6814 28 7 3.7884 -2.6464 7.1255 29 7 3.4443 -2.2599 5.9465 30 1 -0.3634 -1.0271 0.0303 31 1 -0.3633 0.5398 0.8745 32 1 -0.3633 0.4874 -0.9047 33 1 1.3129 -1.4731 -1.5801 34 1 2.3716 -0.0991 -1.9990 35 1 2.4455 -2.1011 -4.3133 36 1 3.7961 -2.1448 1.2131 37 1 4.1932 -0.4494 0.7976 38 1 2.9855 0.8625 2.2436 39 1 1.2750 0.5883 2.6524 40 1 2.7627 -1.6603 3.4933 41 1 3.3860 0.5616 7.5445 42 1 2.2010 -2.1853 10.0153 43 1 3.1259 -1.3414 11.2808 44 1 2.3832 -0.4157 9.9546 45 1 5.7485 -2.9408 9.1776 46 1 5.0916 -2.8163 10.8269 47 1 4.1662 -3.6598 9.5615 48 1 4.6043 0.5936 9.4156 49 1 5.3467 -0.3323 10.7418 50 1 6.0043 -0.4569 9.0923 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092663478.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:00:46 Heat of formation + Delta-G solvation = 48.404443 kcal Electronic energy + Delta-G solvation = -28855.609777 eV Core-core repulsion = 24919.380862 eV Total energy + Delta-G solvation = -3936.228914 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.30943 -40.65222 -39.49051 -38.28668 -36.06561 -34.67872 -33.02128 -32.53571 -32.12084 -30.57061 -28.47909 -28.40949 -27.84012 -26.74100 -25.05246 -24.66059 -23.70667 -21.88954 -21.61623 -21.24661 -20.44510 -18.92566 -18.53198 -17.42009 -17.21259 -17.13023 -16.71676 -16.25285 -15.83863 -15.72143 -15.57203 -15.15447 -15.01731 -14.81579 -14.56886 -14.38789 -14.12897 -13.64199 -13.43248 -13.39027 -13.30410 -13.24604 -13.18400 -13.11005 -12.85014 -12.77240 -12.68628 -12.44975 -12.40314 -12.31999 -11.97102 -11.89965 -11.84080 -11.56917 -11.47204 -11.35817 -11.27347 -11.07772 -10.70466 -10.42536 -10.01756 -8.88362 -7.84216 -5.19550 0.16281 0.62120 1.04844 1.45128 1.46171 1.56642 2.12539 2.24276 2.49468 3.17682 3.25294 3.33316 3.61604 3.65424 3.69875 3.77604 3.83084 3.94045 3.95149 3.97732 4.21175 4.38810 4.49655 4.54625 4.58117 4.61163 4.62929 4.68172 4.74173 4.77087 4.80007 4.81045 4.84545 4.88241 4.98611 5.08379 5.10828 5.16959 5.20210 5.26834 5.35095 5.38760 5.47886 5.48653 5.55631 5.74003 5.83483 6.21491 6.41304 6.91086 7.11784 7.12095 7.78950 8.43601 9.26119 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017376 B = 0.002217 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.045487 B =12626.703150 C =13780.925411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.099 4.099 3 H 0.079 0.921 4 C 0.192 3.808 5 N -0.630 5.630 6 C -0.241 4.241 7 H 0.080 0.920 8 C -0.068 4.068 9 N -0.950 5.950 10 Si 0.978 3.022 11 H -0.267 1.267 12 H -0.291 1.291 13 H -0.292 1.292 14 C 0.137 3.863 15 C -0.092 4.092 16 H 0.085 0.915 17 C 0.145 3.855 18 N -0.707 5.707 19 C 0.605 3.395 20 O -0.568 6.568 21 C -0.124 4.124 22 C 0.108 3.892 23 N -0.339 5.339 24 C 0.158 3.842 25 C -0.158 4.158 26 C -0.149 4.149 27 C -0.161 4.161 28 N -0.085 5.085 29 N -0.230 5.230 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.015 0.985 34 H 0.002 0.998 35 H 0.246 0.754 36 H 0.041 0.959 37 H 0.020 0.980 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.412 0.588 41 H 0.231 0.769 42 H 0.054 0.946 43 H 0.113 0.887 44 H 0.072 0.928 45 H 0.055 0.945 46 H 0.110 0.890 47 H 0.060 0.940 48 H 0.079 0.921 49 H 0.115 0.885 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.145 4.802 32.760 33.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.119 4.119 3 H 0.097 0.903 4 C 0.067 3.933 5 N -0.356 5.356 6 C -0.370 4.370 7 H 0.098 0.902 8 C -0.261 4.261 9 N -0.599 5.599 10 Si 0.807 3.193 11 H -0.191 1.191 12 H -0.218 1.218 13 H -0.219 1.219 14 C 0.012 3.988 15 C -0.111 4.111 16 H 0.103 0.897 17 C 0.022 3.978 18 N -0.357 5.357 19 C 0.390 3.610 20 O -0.447 6.447 21 C -0.264 4.264 22 C -0.050 4.050 23 N -0.124 5.124 24 C 0.078 3.922 25 C -0.216 4.216 26 C -0.206 4.206 27 C -0.219 4.219 28 N -0.065 5.065 29 N -0.103 5.103 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.034 0.966 34 H 0.020 0.980 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.038 0.962 38 H 0.084 0.916 39 H 0.102 0.898 40 H 0.248 0.752 41 H 0.247 0.753 42 H 0.073 0.927 43 H 0.132 0.868 44 H 0.091 0.909 45 H 0.074 0.926 46 H 0.129 0.871 47 H 0.079 0.921 48 H 0.098 0.902 49 H 0.133 0.867 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.285 4.026 32.590 32.839 hybrid contribution 0.488 -0.213 -1.372 1.471 sum 0.773 3.814 31.218 31.460 Atomic orbital electron populations 1.21643 0.92912 1.01671 1.02259 1.22318 0.97034 0.98670 0.93884 0.90256 1.20988 0.87980 0.91972 0.92397 1.44806 1.32756 1.51281 1.06717 1.19486 1.07820 1.17734 0.91934 0.90226 1.25660 0.99926 1.02330 0.98204 1.70201 1.30322 1.47037 1.12378 0.85008 0.77940 0.77935 0.78455 1.19129 1.21797 1.21902 1.21760 0.95275 0.97366 0.84431 1.22480 0.96900 0.98360 0.93377 0.89665 1.21266 1.00941 0.92874 0.82747 1.45839 1.68331 1.12933 1.08589 1.16904 0.76428 0.85850 0.81787 1.90773 1.54178 1.14731 1.84997 1.21460 1.17664 0.90998 0.96250 1.23642 0.94998 0.96540 0.89851 1.51210 1.44243 1.05486 1.11509 1.21601 0.98127 1.00279 0.72225 1.22309 0.94554 1.03074 1.01620 1.22029 1.00401 0.94117 1.04051 1.22350 0.98222 0.95843 1.05479 1.81900 1.22294 1.08177 0.94104 1.74649 1.09933 1.11240 1.14501 0.93424 0.90354 0.92708 0.96644 0.98024 0.94439 0.94109 0.96243 0.91566 0.89817 0.75247 0.75299 0.92710 0.86824 0.90896 0.92579 0.87131 0.92114 0.90232 0.86689 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.86 9.13 71.98 0.66 -3.20 16 2 C -0.10 -3.62 3.01 -9.60 -0.03 -3.65 16 3 H 0.08 2.73 8.04 -2.39 -0.02 2.72 16 4 C 0.19 9.68 4.97 86.73 0.43 10.11 16 5 N -0.63 -33.48 3.39 -691.99 -2.35 -35.83 16 6 C -0.24 -13.98 10.28 84.04 0.86 -13.12 16 7 H 0.08 4.46 7.83 -2.91 -0.02 4.43 16 8 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 9 N -0.95 -58.66 10.31 21.65 0.22 -58.44 16 10 Si 0.98 47.24 29.55 68.60 2.03 49.26 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 12 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 13 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 14 C 0.14 5.73 6.65 86.86 0.58 6.31 16 15 C -0.09 -3.07 2.50 -9.40 -0.02 -3.10 16 16 H 0.09 2.84 8.04 -2.39 -0.02 2.82 16 17 C 0.15 4.13 5.13 86.38 0.44 4.57 16 18 N -0.71 -19.65 5.50 -466.29 -2.56 -22.22 16 19 C 0.61 17.08 7.82 86.69 0.68 17.76 16 20 O -0.57 -18.03 16.86 -4.02 -0.07 -18.10 16 21 C -0.12 -3.08 6.99 40.82 0.29 -2.80 16 22 C 0.11 1.90 10.43 83.85 0.87 2.78 16 23 N -0.34 -5.60 3.44 -306.90 -1.06 -6.66 16 24 C 0.16 1.30 1.25 3.60 0.00 1.31 16 25 C -0.16 -0.77 8.74 71.98 0.63 -0.14 16 26 C -0.15 -1.21 8.11 71.98 0.58 -0.63 16 27 C -0.16 -0.62 8.30 71.98 0.60 -0.02 16 28 N -0.09 -2.07 12.91 37.02 0.48 -1.59 16 29 N -0.23 -6.33 12.04 -50.00 -0.60 -6.93 16 30 H 0.05 1.50 8.13 -2.39 -0.02 1.48 16 31 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.02 0.87 7.06 -2.38 -0.02 0.85 16 34 H 0.00 0.09 7.51 -2.38 -0.02 0.07 16 35 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 36 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.02 0.83 7.91 -2.39 -0.02 0.81 16 38 H 0.07 1.98 7.96 -2.39 -0.02 1.97 16 39 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.41 11.28 8.16 -92.71 -0.76 10.53 16 41 H 0.23 2.44 7.62 -2.91 -0.02 2.42 16 42 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.11 -0.05 8.14 -2.38 -0.02 -0.07 16 44 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 45 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 46 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 47 H 0.06 0.69 8.06 -2.39 -0.02 0.68 16 48 H 0.08 0.20 7.43 -2.39 -0.02 0.18 16 49 H 0.11 -0.14 8.14 -2.38 -0.02 -0.16 16 50 H 0.06 0.40 8.14 -2.39 -0.02 0.39 16 Total: -1.00 -77.30 405.74 3.30 -74.00 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.17 Total: 13.88 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 7.04 Total: 12.62 kcal Atomic # 7 Polarization: -125.80 SS G_CDS: -5.87 Total: -131.67 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.07 Total: -18.10 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.26 kcal Total: -77.30 3.30 -74.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092663478.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.403 kcal (2) G-P(sol) polarization free energy of solvation -77.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds