Wall clock time and date at job start Wed Apr 1 2020 01:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 110.64412 * 2 1 4 4 C 1.54322 * 110.71873 * 236.85669 * 2 1 3 5 5 N 1.47016 * 107.27584 * 219.44305 * 4 2 1 6 6 C 1.36934 * 125.65257 * 178.90450 * 5 4 2 7 7 H 1.08001 * 120.00082 * 180.02562 * 6 5 4 8 8 C 1.38818 * 120.00056 * 0.02904 * 6 5 4 9 9 N 1.31621 * 119.99528 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00255 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46979 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46936 * 119.99940 * 10 8 6 13 13 H 1.48493 * 109.47316 * 239.99911 * 10 8 6 14 14 C 1.47425 * 108.70144 * 358.94568 * 5 4 2 15 15 C 1.54913 * 104.83172 * 24.12623 * 14 5 4 16 16 H 1.08993 * 111.00353 * 81.06953 * 15 14 5 17 17 C 1.53005 * 111.00185 * 204.91813 * 15 14 5 18 18 N 1.46490 * 109.47021 * 287.19367 * 17 15 14 19 19 C 1.34778 * 120.00109 * 179.97438 * 18 17 15 20 20 O 1.21556 * 119.99820 * 0.02562 * 19 18 17 21 21 C 1.47868 * 120.00699 * 180.02562 * 19 18 17 22 22 N 1.34554 * 126.04310 * 0.02562 * 21 19 18 23 23 C 1.30868 * 107.26674 * 180.02562 * 22 21 19 24 24 N 1.34580 * 107.62818 * 0.02562 * 23 22 21 25 25 C 1.46500 * 125.75004 * 179.97438 * 24 23 22 26 26 C 1.53001 * 109.47120 * 75.00070 * 25 24 23 27 27 C 1.52999 * 109.47273 * 195.00010 * 25 24 23 28 28 C 1.52997 * 109.47154 * 315.00072 * 25 24 23 29 29 N 1.28853 * 108.50144 * 359.72718 * 24 23 22 30 30 H 1.08994 * 109.47357 * 181.68934 * 1 2 3 31 31 H 1.08998 * 109.46865 * 301.68696 * 1 2 3 32 32 H 1.08994 * 109.46919 * 61.68521 * 1 2 3 33 33 H 1.09005 * 109.88278 * 338.86758 * 4 2 1 34 34 H 1.09005 * 109.88137 * 99.87244 * 4 2 1 35 35 H 0.97004 * 119.99644 * 179.97438 * 9 8 6 36 36 H 1.08996 * 110.36900 * 142.96779 * 14 5 4 37 37 H 1.08998 * 110.36632 * 265.28801 * 14 5 4 38 38 H 1.09004 * 109.47149 * 47.19798 * 17 15 14 39 39 H 1.08997 * 109.46866 * 167.19429 * 17 15 14 40 40 H 0.96998 * 120.00572 * 0.02562 * 18 17 15 41 41 H 1.07999 * 126.18626 * 179.97438 * 23 22 21 42 42 H 1.08995 * 109.47671 * 59.99910 * 26 25 24 43 43 H 1.09000 * 109.47375 * 180.02562 * 26 25 24 44 44 H 1.09003 * 109.46850 * 299.99614 * 26 25 24 45 45 H 1.08997 * 109.47077 * 59.99614 * 27 25 24 46 46 H 1.08995 * 109.47065 * 180.02562 * 27 25 24 47 47 H 1.09003 * 109.46878 * 299.99837 * 27 25 24 48 48 H 1.08998 * 109.47162 * 59.99714 * 28 25 24 49 49 H 1.08993 * 109.47389 * 180.02562 * 28 25 24 50 50 H 1.09005 * 109.47358 * 300.00095 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7892 -1.2086 5 7 3.2445 -1.5495 -0.7417 6 6 4.0034 -2.3955 -1.5056 7 1 4.8454 -2.9103 -1.0670 8 6 3.6905 -2.5915 -2.8438 9 7 2.6640 -1.9644 -3.3782 10 14 4.7261 -3.7449 -3.8860 11 1 5.8128 -4.3221 -3.0545 12 1 3.8710 -4.8395 -4.4114 13 1 5.3173 -2.9908 -5.0203 14 6 3.4633 -1.2511 0.6853 15 6 2.0790 -0.7976 1.2124 16 1 1.4452 -1.6561 1.4346 17 6 2.2279 0.1037 2.4398 18 7 2.6329 -0.7042 3.5926 19 6 2.8261 -0.1190 4.7912 20 8 2.6638 1.0793 4.9157 21 6 3.2354 -0.9343 5.9549 22 7 3.4489 -2.2628 5.9550 23 6 3.7936 -2.6007 7.1714 24 7 3.7923 -1.4829 7.9208 25 6 4.1199 -1.4080 9.3468 26 6 5.6337 -1.5349 9.5296 27 6 3.6492 -0.0649 9.9084 28 6 3.4191 -2.5460 10.0915 29 7 3.4594 -0.4888 7.1717 30 1 -0.3634 -1.0271 0.0303 31 1 -0.3633 0.5398 0.8745 32 1 -0.3633 0.4874 -0.9047 33 1 1.3129 -1.4731 -1.5801 34 1 2.3716 -0.0991 -1.9990 35 1 2.4455 -2.1011 -4.3133 36 1 3.7961 -2.1448 1.2131 37 1 4.1932 -0.4494 0.7976 38 1 2.9855 0.8625 2.2436 39 1 1.2750 0.5883 2.6524 40 1 2.7627 -1.6603 3.4933 41 1 4.0346 -3.5967 7.5124 42 1 6.1330 -0.7242 8.9991 43 1 5.8774 -1.4796 10.5906 44 1 5.9690 -2.4918 9.1296 45 1 2.5709 0.0255 9.7781 46 1 3.8934 -0.0091 10.9692 47 1 4.1486 0.7458 9.3778 48 1 3.7544 -3.5028 9.6914 49 1 3.6624 -2.4900 11.1525 50 1 2.3406 -2.4556 9.9613 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092963913.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:00:51 Heat of formation + Delta-G solvation = 71.120338 kcal Electronic energy + Delta-G solvation = -28931.384113 eV Core-core repulsion = 24996.140234 eV Total energy + Delta-G solvation = -3935.243879 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.70893 -39.49195 -37.97729 -37.61548 -34.64965 -33.04820 -32.66284 -31.27461 -30.66660 -29.27594 -28.16151 -28.03313 -26.11455 -25.43281 -24.18242 -23.26531 -22.50848 -20.62451 -20.42238 -19.93162 -19.21432 -17.98226 -16.89342 -16.81612 -16.60310 -16.02818 -15.38134 -14.96523 -14.81696 -14.67195 -14.44831 -14.12850 -13.77258 -13.56023 -13.33000 -13.17256 -13.00205 -12.92467 -12.83236 -12.46360 -12.44127 -12.31528 -11.94939 -11.75576 -11.62994 -11.57512 -11.33996 -11.14747 -10.77624 -10.73299 -10.61259 -10.56685 -10.31140 -10.03303 -9.92130 -9.84319 -9.73152 -9.68077 -9.50462 -8.88720 -8.55322 -6.76864 -5.66054 -2.99000 1.28534 1.83463 1.95549 3.07935 3.39796 3.43107 3.48522 3.51056 3.76104 3.98164 4.02581 4.13122 4.43811 4.53848 4.65579 4.78128 4.90649 4.96580 5.02887 5.09132 5.17551 5.17756 5.28448 5.31120 5.40121 5.48843 5.58822 5.62532 5.66519 5.82738 5.83428 5.93593 6.09196 6.13274 6.17172 6.26033 6.30140 6.35934 6.49746 6.55406 6.66581 6.69481 6.82715 7.02309 7.51126 7.63093 7.70429 7.89526 7.90615 8.25213 8.31659 9.27830 9.88119 10.54666 11.45695 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017632 B = 0.002227 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.621700 B =12567.181600 C =13702.026381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.110 4.110 3 H 0.068 0.932 4 C 0.184 3.816 5 N -0.607 5.607 6 C -0.225 4.225 7 H 0.078 0.922 8 C -0.011 4.011 9 N -0.922 5.922 10 Si 0.911 3.089 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.141 3.859 15 C -0.112 4.112 16 H 0.082 0.918 17 C 0.134 3.866 18 N -0.702 5.702 19 C 0.613 3.387 20 O -0.525 6.525 21 C 0.141 3.859 22 N -0.481 5.481 23 C 0.189 3.811 24 N -0.294 5.294 25 C 0.167 3.833 26 C -0.160 4.160 27 C -0.149 4.149 28 C -0.160 4.160 29 N -0.248 5.248 30 H 0.053 0.947 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.041 0.959 35 H 0.251 0.749 36 H 0.038 0.962 37 H 0.019 0.981 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.412 0.588 41 H 0.221 0.779 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.070 0.930 49 H 0.088 0.912 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.588 -0.688 29.350 29.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 H 0.086 0.914 4 C 0.059 3.941 5 N -0.333 5.333 6 C -0.353 4.353 7 H 0.096 0.904 8 C -0.207 4.207 9 N -0.570 5.570 10 Si 0.742 3.258 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.015 3.985 15 C -0.132 4.132 16 H 0.100 0.900 17 C 0.011 3.989 18 N -0.354 5.354 19 C 0.394 3.606 20 O -0.399 6.399 21 C -0.139 4.139 22 N -0.206 5.206 23 C -0.107 4.107 24 N -0.091 5.091 25 C 0.085 3.915 26 C -0.219 4.219 27 C -0.206 4.206 28 C -0.218 4.218 29 N -0.087 5.087 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.037 0.963 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.247 0.753 41 H 0.238 0.762 42 H 0.088 0.912 43 H 0.104 0.896 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.097 0.903 47 H 0.095 0.905 48 H 0.089 0.911 49 H 0.107 0.893 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.378 0.583 29.065 29.074 hybrid contribution 0.750 -1.439 -0.452 1.685 sum 1.128 -0.857 28.613 28.648 Atomic orbital electron populations 1.21694 0.95320 1.01480 1.00690 1.22442 0.95155 0.99131 0.96291 0.91350 1.21211 0.89093 0.93098 0.90695 1.44472 1.32614 1.51497 1.04683 1.19109 1.07485 1.17491 0.91228 0.90443 1.24803 0.98494 1.00434 0.96922 1.69979 1.28819 1.45653 1.12526 0.86049 0.79278 0.80118 0.80367 1.20550 1.21824 1.21829 1.21600 0.92992 0.97223 0.86726 1.22683 0.99541 0.98100 0.92880 0.89968 1.21492 1.00349 0.93700 0.83397 1.45778 1.68390 1.13035 1.08165 1.16280 0.77775 0.85606 0.80937 1.90817 1.51303 1.13699 1.84075 1.23811 1.07372 0.89390 0.93288 1.71314 1.18148 1.11499 1.19653 1.26318 1.02108 0.95367 0.86888 1.47793 1.45796 1.04906 1.10591 1.21164 0.96898 0.99448 0.74014 1.22272 0.92058 1.03629 1.03901 1.21998 1.02957 0.94443 1.01248 1.22262 1.01490 0.96803 1.01273 1.74281 1.16219 1.15264 1.02905 0.92766 0.93653 0.92713 0.93324 0.94056 0.93878 0.94405 0.96285 0.91022 0.91268 0.75254 0.76240 0.91176 0.89571 0.91270 0.91252 0.90310 0.90483 0.91055 0.89304 0.91115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 9.13 37.16 0.34 -1.81 16 2 C -0.11 -2.05 3.01 -88.78 -0.27 -2.32 16 3 H 0.07 1.23 8.04 -51.93 -0.42 0.81 16 4 C 0.18 4.48 4.97 -3.07 -0.02 4.46 16 5 N -0.61 -15.69 3.39 -170.07 -0.58 -16.26 16 6 C -0.22 -6.36 10.28 -15.06 -0.15 -6.51 16 7 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 8 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 9 N -0.92 -27.39 10.31 55.49 0.57 -26.82 16 10 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 14 C 0.14 2.94 6.65 -2.53 -0.02 2.92 16 15 C -0.11 -1.94 2.50 -88.47 -0.22 -2.17 16 16 H 0.08 1.41 8.04 -51.93 -0.42 1.00 16 17 C 0.13 2.08 5.13 -4.04 -0.02 2.05 16 18 N -0.70 -10.56 5.50 -61.24 -0.34 -10.90 16 19 C 0.61 10.09 7.83 -12.32 -0.10 10.00 16 20 O -0.53 -10.12 17.09 5.32 0.09 -10.02 16 21 C 0.14 2.09 7.96 -156.36 -1.24 0.85 16 22 N -0.48 -6.17 11.09 -12.37 -0.14 -6.31 16 23 C 0.19 1.70 11.71 -90.49 -1.06 0.64 16 24 N -0.29 -2.75 3.16 -49.84 -0.16 -2.91 16 25 C 0.17 0.90 1.23 -131.82 -0.16 0.74 16 26 C -0.16 -0.64 8.72 37.16 0.32 -0.31 16 27 C -0.15 -0.86 8.05 37.16 0.30 -0.56 16 28 C -0.16 -0.45 8.28 37.16 0.31 -0.15 16 29 N -0.25 -3.36 11.09 32.07 0.36 -3.00 16 30 H 0.05 0.88 8.13 -51.93 -0.42 0.46 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.05 1.30 7.06 -51.93 -0.37 0.94 16 34 H 0.04 1.12 7.51 -51.93 -0.39 0.73 16 35 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.02 0.41 7.91 -51.93 -0.41 0.00 16 38 H 0.07 1.17 7.96 -51.93 -0.41 0.76 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.41 5.83 8.18 -40.82 -0.33 5.50 16 41 H 0.22 0.93 7.53 -52.49 -0.39 0.53 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 44 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 47 H 0.08 0.59 8.02 -51.93 -0.42 0.17 16 48 H 0.07 0.12 7.34 -51.93 -0.38 -0.26 16 49 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 50 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 LS Contribution 404.86 15.07 6.10 6.10 Total: -1.00 -35.65 404.86 -9.76 -45.41 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -8.56 Total: -0.12 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: -2.08 Total: 7.44 kcal Atomic # 7 Polarization: -65.92 SS G_CDS: -0.28 Total: -66.20 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.65 -9.76 -45.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092963913.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.527 kcal (2) G-P(sol) polarization free energy of solvation -35.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds