Wall clock time and date at job start Wed Apr 1 2020 01:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 110.64412 * 2 1 4 4 C 1.54322 * 110.71873 * 236.85669 * 2 1 3 5 5 N 1.47016 * 107.27584 * 219.44305 * 4 2 1 6 6 C 1.36934 * 125.65257 * 178.90450 * 5 4 2 7 7 H 1.08001 * 120.00082 * 180.02562 * 6 5 4 8 8 C 1.38818 * 120.00056 * 0.02904 * 6 5 4 9 9 N 1.31621 * 119.99528 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00255 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46979 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46936 * 119.99940 * 10 8 6 13 13 H 1.48493 * 109.47316 * 239.99911 * 10 8 6 14 14 C 1.47425 * 108.70144 * 358.94568 * 5 4 2 15 15 C 1.54913 * 104.83172 * 24.12623 * 14 5 4 16 16 H 1.08993 * 111.00353 * 81.06953 * 15 14 5 17 17 C 1.53005 * 111.00185 * 204.91813 * 15 14 5 18 18 N 1.46490 * 109.47021 * 287.19367 * 17 15 14 19 19 C 1.34778 * 120.00109 * 179.97438 * 18 17 15 20 20 O 1.21556 * 119.99820 * 0.02562 * 19 18 17 21 21 C 1.47868 * 120.00699 * 180.02562 * 19 18 17 22 22 N 1.34554 * 126.04310 * 0.02562 * 21 19 18 23 23 C 1.30868 * 107.26674 * 180.02562 * 22 21 19 24 24 N 1.34580 * 107.62818 * 0.02562 * 23 22 21 25 25 C 1.46500 * 125.75004 * 179.97438 * 24 23 22 26 26 C 1.53001 * 109.47120 * 75.00070 * 25 24 23 27 27 C 1.52999 * 109.47273 * 195.00010 * 25 24 23 28 28 C 1.52997 * 109.47154 * 315.00072 * 25 24 23 29 29 N 1.28853 * 108.50144 * 359.72718 * 24 23 22 30 30 H 1.08994 * 109.47357 * 181.68934 * 1 2 3 31 31 H 1.08998 * 109.46865 * 301.68696 * 1 2 3 32 32 H 1.08994 * 109.46919 * 61.68521 * 1 2 3 33 33 H 1.09005 * 109.88278 * 338.86758 * 4 2 1 34 34 H 1.09005 * 109.88137 * 99.87244 * 4 2 1 35 35 H 0.97004 * 119.99644 * 179.97438 * 9 8 6 36 36 H 1.08996 * 110.36900 * 142.96779 * 14 5 4 37 37 H 1.08998 * 110.36632 * 265.28801 * 14 5 4 38 38 H 1.09004 * 109.47149 * 47.19798 * 17 15 14 39 39 H 1.08997 * 109.46866 * 167.19429 * 17 15 14 40 40 H 0.96998 * 120.00572 * 0.02562 * 18 17 15 41 41 H 1.07999 * 126.18626 * 179.97438 * 23 22 21 42 42 H 1.08995 * 109.47671 * 59.99910 * 26 25 24 43 43 H 1.09000 * 109.47375 * 180.02562 * 26 25 24 44 44 H 1.09003 * 109.46850 * 299.99614 * 26 25 24 45 45 H 1.08997 * 109.47077 * 59.99614 * 27 25 24 46 46 H 1.08995 * 109.47065 * 180.02562 * 27 25 24 47 47 H 1.09003 * 109.46878 * 299.99837 * 27 25 24 48 48 H 1.08998 * 109.47162 * 59.99714 * 28 25 24 49 49 H 1.08993 * 109.47389 * 180.02562 * 28 25 24 50 50 H 1.09005 * 109.47358 * 300.00095 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7892 -1.2086 5 7 3.2445 -1.5495 -0.7417 6 6 4.0034 -2.3955 -1.5056 7 1 4.8454 -2.9103 -1.0670 8 6 3.6905 -2.5915 -2.8438 9 7 2.6640 -1.9644 -3.3782 10 14 4.7261 -3.7449 -3.8860 11 1 5.8128 -4.3221 -3.0545 12 1 3.8710 -4.8395 -4.4114 13 1 5.3173 -2.9908 -5.0203 14 6 3.4633 -1.2511 0.6853 15 6 2.0790 -0.7976 1.2124 16 1 1.4452 -1.6561 1.4346 17 6 2.2279 0.1037 2.4398 18 7 2.6329 -0.7042 3.5926 19 6 2.8261 -0.1190 4.7912 20 8 2.6638 1.0793 4.9157 21 6 3.2354 -0.9343 5.9549 22 7 3.4489 -2.2628 5.9550 23 6 3.7936 -2.6007 7.1714 24 7 3.7923 -1.4829 7.9208 25 6 4.1199 -1.4080 9.3468 26 6 5.6337 -1.5349 9.5296 27 6 3.6492 -0.0649 9.9084 28 6 3.4191 -2.5460 10.0915 29 7 3.4594 -0.4888 7.1717 30 1 -0.3634 -1.0271 0.0303 31 1 -0.3633 0.5398 0.8745 32 1 -0.3633 0.4874 -0.9047 33 1 1.3129 -1.4731 -1.5801 34 1 2.3716 -0.0991 -1.9990 35 1 2.4455 -2.1011 -4.3133 36 1 3.7961 -2.1448 1.2131 37 1 4.1932 -0.4494 0.7976 38 1 2.9855 0.8625 2.2436 39 1 1.2750 0.5883 2.6524 40 1 2.7627 -1.6603 3.4933 41 1 4.0346 -3.5967 7.5124 42 1 6.1330 -0.7242 8.9991 43 1 5.8774 -1.4796 10.5906 44 1 5.9690 -2.4918 9.1296 45 1 2.5709 0.0255 9.7781 46 1 3.8934 -0.0091 10.9692 47 1 4.1486 0.7458 9.3778 48 1 3.7544 -3.5028 9.6914 49 1 3.6624 -2.4900 11.1525 50 1 2.3406 -2.4556 9.9613 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092963913.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:00:50 Heat of formation + Delta-G solvation = 48.040541 kcal Electronic energy + Delta-G solvation = -28932.384928 eV Core-core repulsion = 24996.140234 eV Total energy + Delta-G solvation = -3936.244694 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.53626 -40.79292 -39.53505 -38.20903 -36.13994 -34.73039 -33.61207 -32.53247 -32.15868 -30.75861 -28.48193 -28.39658 -27.90035 -26.95928 -25.51200 -24.09090 -23.98476 -21.86272 -21.61204 -21.08478 -20.72660 -19.08814 -18.65844 -17.64765 -17.50531 -17.31003 -16.81190 -16.35900 -15.97286 -15.64376 -15.59436 -15.12195 -15.00931 -14.82775 -14.61848 -14.40716 -14.13769 -13.79111 -13.44055 -13.34132 -13.24648 -13.22985 -13.11569 -13.01934 -12.84835 -12.76146 -12.68697 -12.39716 -12.38068 -11.99336 -11.91679 -11.83986 -11.64383 -11.52675 -11.46727 -11.41460 -11.37045 -11.17098 -10.69788 -10.61021 -10.13497 -8.87818 -7.83202 -5.18683 0.31284 1.09983 1.16484 1.46177 1.47353 1.57753 2.00319 2.25328 2.50413 3.08677 3.28047 3.34416 3.60378 3.66769 3.73152 3.78228 3.82082 3.90504 3.94168 3.96538 4.37255 4.50367 4.56526 4.59252 4.60860 4.61834 4.69504 4.74595 4.78498 4.79040 4.81234 4.85817 4.93469 4.98215 5.09642 5.11116 5.14413 5.17824 5.22515 5.29300 5.37365 5.38562 5.46406 5.48916 5.68649 5.73806 5.83631 6.22034 6.32917 6.92099 7.10790 7.12417 7.79544 8.44422 9.27228 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017632 B = 0.002227 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.621700 B =12567.181600 C =13702.026381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.100 4.100 3 H 0.077 0.923 4 C 0.192 3.808 5 N -0.629 5.629 6 C -0.240 4.240 7 H 0.082 0.918 8 C -0.069 4.069 9 N -0.951 5.951 10 Si 0.979 3.021 11 H -0.266 1.266 12 H -0.291 1.291 13 H -0.294 1.294 14 C 0.137 3.863 15 C -0.090 4.090 16 H 0.089 0.911 17 C 0.145 3.855 18 N -0.694 5.694 19 C 0.612 3.388 20 O -0.562 6.562 21 C 0.113 3.887 22 N -0.505 5.505 23 C 0.201 3.799 24 N -0.286 5.286 25 C 0.156 3.844 26 C -0.157 4.157 27 C -0.148 4.148 28 C -0.156 4.156 29 N -0.271 5.271 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.017 0.983 34 H 0.001 0.999 35 H 0.246 0.754 36 H 0.045 0.955 37 H 0.018 0.982 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.417 0.583 41 H 0.270 0.730 42 H 0.045 0.955 43 H 0.114 0.886 44 H 0.080 0.920 45 H 0.052 0.948 46 H 0.110 0.890 47 H 0.050 0.950 48 H 0.089 0.911 49 H 0.114 0.886 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.152 -2.380 32.425 32.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.120 4.120 3 H 0.095 0.905 4 C 0.067 3.933 5 N -0.355 5.355 6 C -0.369 4.369 7 H 0.099 0.901 8 C -0.262 4.262 9 N -0.600 5.600 10 Si 0.807 3.193 11 H -0.190 1.190 12 H -0.218 1.218 13 H -0.221 1.221 14 C 0.012 3.988 15 C -0.109 4.109 16 H 0.108 0.892 17 C 0.021 3.979 18 N -0.345 5.345 19 C 0.395 3.605 20 O -0.439 6.439 21 C -0.166 4.166 22 N -0.231 5.231 23 C -0.094 4.094 24 N -0.083 5.083 25 C 0.076 3.924 26 C -0.215 4.215 27 C -0.206 4.206 28 C -0.214 4.214 29 N -0.111 5.111 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.035 0.965 34 H 0.019 0.981 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.036 0.964 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.254 0.746 41 H 0.285 0.715 42 H 0.064 0.936 43 H 0.132 0.868 44 H 0.099 0.901 45 H 0.071 0.929 46 H 0.128 0.872 47 H 0.070 0.930 48 H 0.108 0.892 49 H 0.132 0.868 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.957 -1.128 32.186 32.220 hybrid contribution 0.647 -0.930 -1.272 1.704 sum 1.604 -2.059 30.914 31.024 Atomic orbital electron populations 1.21645 0.92884 1.01783 1.02196 1.22324 0.97073 0.98643 0.93958 0.90458 1.20980 0.88051 0.91976 0.92272 1.44802 1.32742 1.51273 1.06688 1.19496 1.07821 1.17668 0.91910 0.90066 1.25670 0.99928 1.02353 0.98226 1.70203 1.30365 1.47071 1.12370 0.84999 0.77951 0.77906 0.78422 1.18984 1.21776 1.22075 1.21757 0.95095 0.97472 0.84489 1.22469 0.97142 0.98335 0.92990 0.89236 1.21317 1.00907 0.92994 0.82649 1.45668 1.67948 1.13160 1.07752 1.16513 0.77048 0.85347 0.81567 1.90781 1.53078 1.15227 1.84767 1.23476 1.09658 0.90240 0.93211 1.71253 1.19416 1.10532 1.21906 1.27191 0.99749 0.96746 0.85664 1.48213 1.44216 1.04186 1.11661 1.21670 0.98351 1.00300 0.72051 1.22294 0.90370 1.03287 1.05515 1.22015 1.01532 0.94112 1.02943 1.22303 1.00369 0.96246 1.02433 1.74208 1.16649 1.17232 1.03021 0.93186 0.90541 0.92701 0.96472 0.98078 0.94462 0.93704 0.96431 0.91663 0.89886 0.74639 0.71490 0.93578 0.86782 0.90058 0.92912 0.87170 0.93047 0.89181 0.86756 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.91 9.13 71.98 0.66 -3.25 16 2 C -0.10 -3.69 3.01 -9.60 -0.03 -3.72 16 3 H 0.08 2.73 8.04 -2.39 -0.02 2.71 16 4 C 0.19 9.69 4.97 86.73 0.43 10.12 16 5 N -0.63 -33.21 3.39 -691.99 -2.35 -35.56 16 6 C -0.24 -13.79 10.28 84.04 0.86 -12.93 16 7 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 8 C -0.07 -4.02 5.49 84.86 0.47 -3.56 16 9 N -0.95 -58.44 10.31 21.65 0.22 -58.22 16 10 Si 0.98 46.76 29.55 68.60 2.03 48.79 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 12 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 13 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 14 C 0.14 5.70 6.65 86.86 0.58 6.28 16 15 C -0.09 -3.03 2.50 -9.40 -0.02 -3.05 16 16 H 0.09 2.94 8.04 -2.39 -0.02 2.92 16 17 C 0.14 4.33 5.13 86.38 0.44 4.77 16 18 N -0.69 -20.44 5.50 -465.95 -2.56 -23.01 16 19 C 0.61 20.28 7.83 86.79 0.68 20.96 16 20 O -0.56 -22.00 17.09 -3.89 -0.07 -22.07 16 21 C 0.11 3.33 7.96 137.13 1.09 4.42 16 22 N -0.51 -12.34 11.09 -193.04 -2.14 -14.49 16 23 C 0.20 3.12 11.71 180.30 2.11 5.23 16 24 N -0.29 -4.91 3.16 -311.60 -0.99 -5.89 16 25 C 0.16 1.32 1.23 3.60 0.00 1.33 16 26 C -0.16 -0.80 8.72 71.98 0.63 -0.17 16 27 C -0.15 -1.55 8.05 71.98 0.58 -0.97 16 28 C -0.16 -0.31 8.28 71.98 0.60 0.29 16 29 N -0.27 -7.31 11.09 -52.44 -0.58 -7.90 16 30 H 0.05 1.57 8.13 -2.39 -0.02 1.55 16 31 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.02 0.96 7.06 -2.38 -0.02 0.94 16 34 H 0.00 0.06 7.51 -2.38 -0.02 0.04 16 35 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 36 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.02 0.75 7.91 -2.39 -0.02 0.74 16 38 H 0.07 2.08 7.96 -2.39 -0.02 2.06 16 39 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.42 11.47 8.18 -92.71 -0.76 10.71 16 41 H 0.27 1.04 7.53 -2.91 -0.02 1.02 16 42 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.11 -0.04 8.14 -2.39 -0.02 -0.05 16 44 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 45 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 47 H 0.05 0.80 8.02 -2.39 -0.02 0.78 16 48 H 0.09 -0.13 7.34 -2.39 -0.02 -0.15 16 49 H 0.11 -0.30 8.14 -2.39 -0.02 -0.32 16 50 H 0.06 0.30 8.14 -2.38 -0.02 0.28 16 Total: -1.00 -82.07 404.86 2.81 -79.26 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.17 Total: 13.33 kcal Atomic # 6 Polarization: 16.67 SS G_CDS: 9.08 Total: 25.74 kcal Atomic # 7 Polarization: -136.66 SS G_CDS: -8.40 Total: -145.06 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.07 Total: -22.07 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -82.07 2.81 -79.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092963913.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.302 kcal (2) G-P(sol) polarization free energy of solvation -82.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds