Wall clock time and date at job start Wed Apr 1 2020 00:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08991 * 110.64286 * 2 1 4 4 C 1.54325 * 110.86980 * 236.75035 * 2 1 3 5 5 N 1.47033 * 107.26805 * 219.37561 * 4 2 1 6 6 C 1.36936 * 125.64407 * 178.98611 * 5 4 2 7 7 H 1.08004 * 119.99672 * 179.97438 * 6 5 4 8 8 C 1.38809 * 120.00263 * 359.97438 * 6 5 4 9 9 N 1.31618 * 119.99987 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00046 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47441 * 89.99585 * 10 8 6 12 12 H 1.48499 * 109.47135 * 209.99490 * 10 8 6 13 13 H 1.48506 * 109.47119 * 329.99520 * 10 8 6 14 14 C 1.47419 * 108.70299 * 358.94143 * 5 4 2 15 15 C 1.54902 * 104.83512 * 24.12804 * 14 5 4 16 16 H 1.09004 * 111.03727 * 81.08111 * 15 14 5 17 17 C 1.53003 * 111.00557 * 204.91554 * 15 14 5 18 18 C 1.52996 * 109.47301 * 287.19660 * 17 15 14 19 19 N 1.46498 * 109.47059 * 179.97438 * 18 17 15 20 20 C 1.34777 * 119.99828 * 179.72339 * 19 18 17 21 21 O 1.21283 * 120.00222 * 0.28168 * 20 19 18 22 22 C 1.50703 * 120.00290 * 180.27728 * 20 19 18 23 23 C 1.52990 * 109.47398 * 180.02562 * 22 20 19 24 24 C 1.52995 * 109.47353 * 179.97438 * 23 22 20 25 25 N 1.46500 * 109.47654 * 180.02562 * 24 23 22 26 26 C 1.34426 * 126.82596 * 125.00044 * 25 24 23 27 27 N 1.30831 * 108.07730 * 179.97438 * 26 25 24 28 28 C 1.33239 * 109.83071 * 0.02562 * 27 26 25 29 29 N 1.30711 * 108.94663 * 359.74340 * 28 27 26 30 30 H 1.09000 * 109.46513 * 296.85857 * 1 2 3 31 31 H 1.08999 * 109.47109 * 56.85689 * 1 2 3 32 32 H 1.08998 * 109.46851 * 176.86105 * 1 2 3 33 33 H 1.08996 * 109.88405 * 338.78651 * 4 2 1 34 34 H 1.08996 * 109.88276 * 99.96160 * 4 2 1 35 35 H 0.97003 * 120.00203 * 180.02562 * 9 8 6 36 36 H 1.09007 * 110.36735 * 265.29125 * 14 5 4 37 37 H 1.08995 * 110.36986 * 142.97173 * 14 5 4 38 38 H 1.09004 * 109.47038 * 167.19670 * 17 15 14 39 39 H 1.09000 * 109.46939 * 47.20323 * 17 15 14 40 40 H 1.09004 * 109.47066 * 60.00027 * 18 17 15 41 41 H 1.08994 * 109.46974 * 300.00175 * 18 17 15 42 42 H 0.97001 * 120.00384 * 0.02562 * 19 18 17 43 43 H 1.08998 * 109.46954 * 300.00581 * 22 20 19 44 44 H 1.09002 * 109.46946 * 59.99717 * 22 20 19 45 45 H 1.08998 * 109.47508 * 300.00200 * 23 22 20 46 46 H 1.09011 * 109.47182 * 60.00188 * 23 22 20 47 47 H 1.08999 * 109.47616 * 300.00389 * 24 23 22 48 48 H 1.09003 * 109.47280 * 60.00024 * 24 23 22 49 49 H 1.08001 * 125.96461 * 359.93125 * 26 25 24 50 50 H 1.07998 * 125.52802 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0199 0.0000 4 6 2.0798 -0.7906 -1.2059 5 7 3.2494 -1.5472 -0.7353 6 6 4.0125 -2.3919 -1.4964 7 1 4.8555 -2.9031 -1.0553 8 6 3.7026 -2.5911 -2.8347 9 7 2.6750 -1.9685 -3.3720 10 14 4.7440 -3.7429 -3.8731 11 1 4.1880 -5.1178 -3.7963 12 1 4.7331 -3.2827 -5.2849 13 1 6.1389 -3.7439 -3.3636 14 6 3.4652 -1.2448 0.6914 15 6 2.0790 -0.7934 1.2151 16 1 1.4465 -1.6526 1.4388 17 6 2.2237 0.1111 2.4406 18 6 2.6468 -0.7288 3.6474 19 7 2.7860 0.1374 4.8206 20 6 3.1477 -0.3886 6.0076 21 8 3.3630 -1.5784 6.1033 22 6 3.2848 0.5014 7.2160 23 6 3.7031 -0.3393 8.4238 24 6 3.8429 0.5644 9.6504 25 7 4.2440 -0.2405 10.8069 26 6 5.3124 -0.0387 11.5974 27 7 5.3200 -0.9709 12.5154 28 6 4.2774 -1.7826 12.3440 29 7 3.5858 -1.3732 11.3132 30 1 -0.3632 0.4643 0.9168 31 1 -0.3633 0.5619 -0.8605 32 1 -0.3633 -1.0261 -0.0563 33 1 1.3190 -1.4774 -1.5769 34 1 2.3775 -0.1016 -1.9963 35 1 2.4582 -2.1080 -4.3072 36 1 4.1930 -0.4410 0.8030 37 1 3.7992 -2.1364 1.2219 38 1 1.2693 0.5939 2.6506 39 1 2.9798 0.8713 2.2439 40 1 3.6013 -1.2116 3.4374 41 1 1.8908 -1.4889 3.8441 42 1 2.6135 1.0889 4.7442 43 1 4.0417 1.2617 7.0232 44 1 2.3294 0.9840 7.4220 45 1 2.9465 -1.0998 8.6167 46 1 4.6587 -0.8215 8.2175 47 1 4.5997 1.3247 9.4573 48 1 2.8876 1.0470 9.8570 49 1 6.0383 0.7541 11.4925 50 1 4.0396 -2.6373 12.9598 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103617874.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:55:31 Heat of formation + Delta-G solvation = 34.191796 kcal Electronic energy + Delta-G solvation = -27651.971334 eV Core-core repulsion = 23715.126114 eV Total energy + Delta-G solvation = -3936.845221 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 5.07 seconds Orbital eigenvalues (eV) -42.94111 -40.79711 -39.72838 -36.74214 -36.23603 -34.99508 -33.28985 -32.53444 -32.29841 -32.12929 -28.99346 -27.95137 -27.23085 -25.60444 -24.14979 -23.27920 -22.87283 -22.09468 -21.58446 -21.17716 -20.63284 -18.86437 -18.53852 -17.64441 -17.17307 -16.94983 -16.82918 -16.50748 -16.10415 -15.84840 -15.68667 -15.55145 -15.07543 -14.79329 -14.69827 -14.39212 -14.16768 -13.87331 -13.70306 -13.43392 -13.35375 -13.26053 -12.93693 -12.80071 -12.76532 -12.69020 -12.55171 -12.38057 -12.20939 -11.91691 -11.81500 -11.81018 -11.42545 -11.27274 -11.15926 -10.99601 -10.84464 -10.77745 -10.71145 -10.57042 -10.05451 -8.89132 -7.86290 -5.21434 0.73503 1.42488 1.44588 1.48494 1.53202 1.69979 2.03439 2.26835 2.47631 3.31004 3.52201 3.56280 3.66072 3.73257 3.78084 3.90893 3.96075 4.04118 4.14737 4.15800 4.27298 4.35168 4.38824 4.51959 4.52758 4.57969 4.62251 4.70659 4.74486 4.77638 4.84819 5.00791 5.02857 5.05784 5.13579 5.19916 5.24852 5.29028 5.33661 5.40404 5.45779 5.48762 5.50962 5.54950 5.75523 5.83617 5.99344 6.20349 6.64108 7.10383 7.15092 7.35119 7.78493 8.42683 9.23562 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020097 B = 0.001601 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.916911 B =17485.078531 C =18493.457305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.101 4.101 3 H 0.083 0.917 4 C 0.189 3.811 5 N -0.632 5.632 6 C -0.245 4.245 7 H 0.077 0.923 8 C -0.067 4.067 9 N -0.949 5.949 10 Si 0.977 3.023 11 H -0.287 1.287 12 H -0.291 1.291 13 H -0.270 1.270 14 C 0.133 3.867 15 C -0.081 4.081 16 H 0.067 0.933 17 C -0.097 4.097 18 C 0.123 3.877 19 N -0.714 5.714 20 C 0.499 3.501 21 O -0.600 6.600 22 C -0.123 4.123 23 C -0.111 4.111 24 C 0.128 3.872 25 N -0.383 5.383 26 C 0.259 3.741 27 N -0.585 5.585 28 C 0.186 3.814 29 N -0.357 5.357 30 H 0.084 0.916 31 H 0.052 0.948 32 H 0.038 0.962 33 H 0.009 0.991 34 H 0.000 1.000 35 H 0.246 0.754 36 H 0.026 0.974 37 H 0.028 0.972 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.044 0.956 41 H 0.051 0.949 42 H 0.421 0.579 43 H 0.138 0.862 44 H 0.131 0.869 45 H 0.047 0.953 46 H 0.050 0.950 47 H 0.150 0.850 48 H 0.107 0.893 49 H 0.264 0.736 50 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.779 15.505 28.319 32.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.120 4.120 3 H 0.101 0.899 4 C 0.064 3.936 5 N -0.358 5.358 6 C -0.374 4.374 7 H 0.095 0.905 8 C -0.260 4.260 9 N -0.599 5.599 10 Si 0.805 3.195 11 H -0.214 1.214 12 H -0.218 1.218 13 H -0.195 1.195 14 C 0.008 3.992 15 C -0.101 4.101 16 H 0.085 0.915 17 C -0.135 4.135 18 C -0.002 4.002 19 N -0.367 5.367 20 C 0.288 3.712 21 O -0.481 6.481 22 C -0.163 4.163 23 C -0.150 4.150 24 C 0.007 3.993 25 N -0.174 5.174 26 C -0.037 4.037 27 N -0.313 5.313 28 C -0.116 4.116 29 N -0.185 5.185 30 H 0.103 0.897 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.027 0.973 34 H 0.018 0.982 35 H 0.056 0.944 36 H 0.044 0.956 37 H 0.047 0.953 38 H 0.117 0.883 39 H 0.101 0.899 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.258 0.742 43 H 0.156 0.844 44 H 0.149 0.851 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.168 0.832 48 H 0.125 0.875 49 H 0.280 0.720 50 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -1.049 14.280 28.092 31.531 hybrid contribution 0.544 -0.921 -1.462 1.811 sum -0.504 13.359 26.630 29.797 Atomic orbital electron populations 1.21635 0.93229 1.01148 1.02421 1.22363 0.96731 0.98710 0.94197 0.89916 1.21011 0.87789 0.91941 0.92811 1.44832 1.32553 1.51450 1.06937 1.19456 1.07770 1.18138 0.92053 0.90487 1.25642 0.99923 1.02268 0.98147 1.70197 1.30287 1.47031 1.12339 0.85099 0.78455 0.78172 0.77742 1.21399 1.21751 1.19506 1.21836 0.96171 0.97034 0.84151 1.22215 0.95630 0.98058 0.94209 0.91462 1.21582 1.03656 0.97381 0.90904 1.21209 1.00410 0.93507 0.85053 1.45910 1.69579 1.12847 1.08379 1.21528 0.75232 0.88761 0.85721 1.90743 1.52122 1.19247 1.86017 1.21599 1.07225 0.98054 0.89445 1.21441 1.01870 0.98194 0.93469 1.22205 1.05303 0.91718 0.80042 1.50774 1.20043 1.21662 1.24874 1.26981 0.91198 0.98827 0.86689 1.70534 1.24836 1.07954 1.27962 1.26471 0.89888 1.00389 0.94883 1.78005 1.22919 1.02253 1.15361 0.89744 0.92895 0.94328 0.97313 0.98199 0.94441 0.95621 0.95344 0.88316 0.89889 0.93718 0.93025 0.74150 0.84437 0.85083 0.93423 0.93132 0.83206 0.87452 0.72022 0.75103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.57 9.17 71.98 0.66 -2.91 16 2 C -0.10 -3.43 3.01 -9.60 -0.03 -3.46 16 3 H 0.08 2.54 8.04 -2.39 -0.02 2.52 16 4 C 0.19 9.43 4.97 86.73 0.43 9.86 16 5 N -0.63 -33.44 3.39 -691.99 -2.35 -35.79 16 6 C -0.24 -14.30 10.28 84.03 0.86 -13.43 16 7 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 8 C -0.07 -3.93 5.49 84.86 0.47 -3.46 16 9 N -0.95 -58.46 10.31 21.65 0.22 -58.24 16 10 Si 0.98 47.16 29.55 68.60 2.03 49.19 16 11 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 12 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 13 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 14 C 0.13 5.45 6.18 86.85 0.54 5.99 16 15 C -0.08 -2.54 2.45 -9.40 -0.02 -2.56 16 16 H 0.07 2.25 8.05 -2.38 -0.02 2.23 16 17 C -0.10 -1.95 4.84 30.59 0.15 -1.80 16 18 C 0.12 2.74 5.58 86.38 0.48 3.22 16 19 N -0.71 -10.84 5.56 -463.07 -2.57 -13.41 16 20 C 0.50 9.36 7.83 87.66 0.69 10.05 16 21 O -0.60 -18.95 15.98 -3.04 -0.05 -19.00 16 22 C -0.12 -0.81 5.70 29.85 0.17 -0.64 16 23 C -0.11 -1.35 4.72 30.59 0.14 -1.20 16 24 C 0.13 0.62 6.55 86.38 0.57 1.19 16 25 N -0.38 -5.02 3.69 -352.07 -1.30 -6.32 16 26 C 0.26 2.82 12.63 180.36 2.28 5.10 16 27 N -0.58 -10.44 11.19 -204.01 -2.28 -12.72 16 28 C 0.19 3.40 13.03 180.77 2.36 5.76 16 29 N -0.36 -7.29 12.57 -61.25 -0.77 -8.06 16 30 H 0.08 1.72 8.09 -2.39 -0.02 1.70 16 31 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.04 1.20 8.07 -2.39 -0.02 1.18 16 33 H 0.01 0.49 7.02 -2.39 -0.02 0.47 16 34 H 0.00 -0.01 7.51 -2.39 -0.02 -0.03 16 35 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 36 H 0.03 1.02 7.91 -2.38 -0.02 1.00 16 37 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.10 1.44 8.09 -2.38 -0.02 1.42 16 39 H 0.08 1.51 7.96 -2.39 -0.02 1.49 16 40 H 0.04 1.25 7.75 -2.38 -0.02 1.23 16 41 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.42 2.77 8.47 -92.71 -0.79 1.98 16 43 H 0.14 -0.11 8.14 -2.39 -0.02 -0.13 16 44 H 0.13 0.08 8.14 -2.39 -0.02 0.06 16 45 H 0.05 0.96 8.10 -2.39 -0.02 0.94 16 46 H 0.05 0.88 8.10 -2.38 -0.02 0.86 16 47 H 0.15 -0.65 8.09 -2.39 -0.02 -0.67 16 48 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 49 H 0.26 -0.14 8.06 -2.91 -0.02 -0.16 16 50 H 0.23 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -92.11 408.33 2.80 -89.31 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: 0.13 Total: 3.36 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: 9.73 Total: 11.69 kcal Atomic # 7 Polarization: -125.50 SS G_CDS: -9.05 Total: -134.55 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.05 Total: -19.00 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -92.11 2.80 -89.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103617874.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.505 kcal (2) G-P(sol) polarization free energy of solvation -92.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.08 seconds