Wall clock time and date at job start Wed Apr 1 2020 00:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.91255 * 2 1 4 4 C 1.54912 * 111.00695 * 236.10082 * 2 1 3 5 5 N 1.47431 * 104.82949 * 204.91801 * 4 2 1 6 6 C 1.34774 * 125.64341 * 204.09147 * 5 4 2 7 7 O 1.21281 * 119.99469 * 180.02562 * 6 5 4 8 8 C 1.50701 * 120.00149 * 0.03974 * 6 5 4 9 9 C 1.52999 * 109.47032 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47364 * 179.97438 * 9 8 6 11 11 N 1.46495 * 109.47318 * 179.97438 * 10 9 8 12 12 C 1.35312 * 125.86922 * 124.71996 * 11 10 9 13 13 C 1.35349 * 106.17480 * 179.90447 * 12 11 10 14 14 N 1.33767 * 106.50103 * 0.34890 * 13 12 11 15 15 N 1.28634 * 108.88097 * 359.77653 * 14 13 12 16 16 C 1.47023 * 108.70590 * 24.12456 * 5 4 2 17 17 C 1.54328 * 107.27043 * 358.94013 * 16 5 4 18 18 H 1.09000 * 110.71672 * 96.34629 * 17 16 5 19 19 C 1.52992 * 110.72106 * 219.44112 * 17 16 5 20 20 C 1.52997 * 109.47482 * 293.55011 * 19 17 16 21 21 N 1.46505 * 109.47212 * 179.97438 * 20 19 17 22 22 C 1.36936 * 119.99992 * 179.97438 * 21 20 19 23 23 H 1.08006 * 119.99834 * 0.02562 * 22 21 20 24 24 C 1.38801 * 120.00093 * 180.02562 * 22 21 20 25 25 N 1.31619 * 120.00176 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00265 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46951 * 89.99797 * 26 24 22 28 28 H 1.48500 * 109.47313 * 210.00112 * 26 24 22 29 29 H 1.48501 * 109.46991 * 330.00153 * 26 24 22 30 30 H 1.08997 * 109.47132 * 296.09832 * 1 2 3 31 31 H 1.09005 * 109.47105 * 56.10327 * 1 2 3 32 32 H 1.09001 * 109.46710 * 176.09648 * 1 2 3 33 33 H 1.08992 * 110.36783 * 86.07310 * 4 2 1 34 34 H 1.09008 * 110.45850 * 323.79680 * 4 2 1 35 35 H 1.08998 * 109.46992 * 299.99638 * 8 6 5 36 36 H 1.08998 * 109.47062 * 60.00236 * 8 6 5 37 37 H 1.09002 * 109.47236 * 299.99686 * 9 8 6 38 38 H 1.09006 * 109.47467 * 59.99510 * 9 8 6 39 39 H 1.09002 * 109.46799 * 300.00090 * 10 9 8 40 40 H 1.09006 * 109.47117 * 59.99432 * 10 9 8 41 41 H 1.08008 * 126.91028 * 0.02562 * 12 11 10 42 42 H 1.08008 * 126.75086 * 180.11913 * 13 12 11 43 43 H 1.08996 * 109.87920 * 239.53158 * 16 5 4 44 44 H 1.08996 * 109.88311 * 118.35693 * 16 5 4 45 45 H 1.09002 * 109.47103 * 173.54764 * 19 17 16 46 46 H 1.08998 * 109.46862 * 53.55576 * 19 17 16 47 47 H 1.09002 * 109.47153 * 59.99783 * 20 19 17 48 48 H 1.09001 * 109.46832 * 299.99974 * 20 19 17 49 49 H 0.96996 * 119.99606 * 0.02562 * 21 20 19 50 50 H 0.97001 * 120.00803 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0854 -0.8066 -1.2003 5 7 3.4273 -1.2430 -0.7732 6 6 4.4478 -1.5615 -1.5939 7 8 5.5128 -1.9098 -1.1300 8 6 4.2656 -1.4844 -3.0879 9 6 5.5657 -1.8951 -3.7821 10 6 5.3805 -1.8175 -5.2988 11 7 6.6256 -2.2101 -5.9635 12 6 6.7556 -3.1878 -6.8900 13 6 8.0644 -3.2096 -7.2340 14 7 8.6647 -2.2621 -6.5051 15 7 7.7849 -1.6882 -5.7626 16 6 3.4675 -1.2741 0.6961 17 6 2.0862 -0.8078 1.2023 18 1 1.4479 -1.6632 1.4239 19 6 2.2349 0.0876 2.4338 20 6 2.7848 -0.7361 3.6000 21 7 2.9278 0.1215 4.7791 22 6 3.4053 -0.4004 5.9516 23 1 3.6768 -1.4443 6.0069 24 6 3.5402 0.4120 7.0689 25 7 3.2088 1.6840 7.0016 26 14 4.1923 -0.2999 8.6682 27 1 5.6711 -0.1689 8.7017 28 1 3.6038 0.4379 9.8147 29 1 3.8203 -1.7346 8.7594 30 1 -0.3633 0.4521 0.9229 31 1 -0.3633 0.5731 -0.8530 32 1 -0.3633 -1.0253 -0.0700 33 1 2.1560 -0.1720 -2.0836 34 1 1.4526 -1.6704 -1.4043 35 1 3.4638 -2.1576 -3.3913 36 1 4.0093 -0.4633 -3.3704 37 1 6.3678 -1.2223 -3.4787 38 1 5.8217 -2.9163 -3.4994 39 1 4.5785 -2.4906 -5.6018 40 1 5.1243 -0.7964 -5.5818 41 1 5.9720 -3.8216 -7.2784 42 1 8.5328 -3.8658 -7.9527 43 1 4.2426 -0.5996 1.0600 44 1 3.6651 -2.2893 1.0402 45 1 1.2618 0.4969 2.7051 46 1 2.9222 0.9032 2.2091 47 1 3.7579 -1.1454 3.3287 48 1 2.0974 -1.5517 3.8246 49 1 2.6835 1.0589 4.7294 50 1 3.3028 2.2517 7.7825 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104281037.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:54:53 Heat of formation + Delta-G solvation = 33.476153 kcal Electronic energy + Delta-G solvation = -27896.794781 eV Core-core repulsion = 23959.918528 eV Total energy + Delta-G solvation = -3936.876253 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.13899 -41.29309 -39.30389 -36.91696 -36.75481 -34.69732 -33.64647 -33.40827 -31.92618 -31.80687 -29.44761 -27.95638 -27.20557 -25.95045 -24.41612 -23.78842 -23.39695 -22.10007 -21.90041 -21.03708 -20.23247 -19.19082 -18.64681 -17.85098 -17.52128 -17.21962 -16.75978 -16.67874 -15.98092 -15.84329 -15.62032 -15.43614 -15.27204 -15.01180 -14.99936 -14.43022 -14.28736 -13.97587 -13.61213 -13.44375 -13.37073 -13.17270 -13.06052 -12.88737 -12.82551 -12.63180 -12.55507 -12.49565 -12.29575 -12.12690 -12.02288 -11.92518 -11.76186 -11.64576 -11.54395 -11.18575 -11.09267 -10.96448 -10.92755 -10.30507 -9.69568 -9.04249 -7.99349 -5.28594 0.71417 1.43779 1.46225 1.51828 1.54480 1.60036 1.66239 2.00172 2.52559 3.31638 3.34119 3.51739 3.55841 3.65842 3.69712 3.74095 3.85135 4.12294 4.16648 4.19499 4.24829 4.32796 4.35007 4.37169 4.40467 4.43077 4.51555 4.54047 4.65432 4.67806 4.73590 4.77458 4.79080 4.90269 4.94726 5.00857 5.04117 5.15369 5.19689 5.25778 5.28700 5.31894 5.34129 5.42736 5.45847 5.56990 5.74334 6.23519 6.53665 7.13232 7.29367 7.56777 8.05383 8.28813 9.24091 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015561 B = 0.001771 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.964030 B =15803.500449 C =17233.768275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.096 4.096 3 H 0.080 0.920 4 C 0.103 3.897 5 N -0.618 5.618 6 C 0.511 3.489 7 O -0.602 6.602 8 C -0.116 4.116 9 C -0.114 4.114 10 C 0.113 3.887 11 N -0.289 5.289 12 C -0.031 4.031 13 C -0.074 4.074 14 N -0.323 5.323 15 N -0.135 5.135 16 C 0.110 3.890 17 C -0.079 4.079 18 H 0.098 0.902 19 C -0.100 4.100 20 C 0.149 3.851 21 N -0.748 5.748 22 C -0.251 4.251 23 H 0.072 0.928 24 C -0.075 4.075 25 N -0.968 5.968 26 Si 0.974 3.026 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.269 1.269 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.142 0.858 36 H 0.131 0.869 37 H 0.049 0.951 38 H 0.056 0.944 39 H 0.159 0.841 40 H 0.121 0.879 41 H 0.242 0.758 42 H 0.214 0.786 43 H 0.039 0.961 44 H 0.051 0.949 45 H 0.074 0.926 46 H 0.052 0.948 47 H 0.008 0.992 48 H 0.023 0.977 49 H 0.374 0.626 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.245 -9.386 -35.378 37.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.115 4.115 3 H 0.099 0.901 4 C -0.018 4.018 5 N -0.351 5.351 6 C 0.302 3.698 7 O -0.483 6.483 8 C -0.156 4.156 9 C -0.153 4.153 10 C -0.006 4.006 11 N -0.083 5.083 12 C -0.182 4.182 13 C -0.232 4.232 14 N -0.188 5.188 15 N -0.114 5.114 16 C -0.013 4.013 17 C -0.099 4.099 18 H 0.116 0.884 19 C -0.138 4.138 20 C 0.022 3.978 21 N -0.390 5.390 22 C -0.383 4.383 23 H 0.090 0.910 24 C -0.267 4.267 25 N -0.618 5.618 26 Si 0.803 3.197 27 H -0.216 1.216 28 H -0.216 1.216 29 H -0.194 1.194 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.130 0.870 34 H 0.115 0.885 35 H 0.160 0.840 36 H 0.149 0.851 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.176 0.824 40 H 0.139 0.861 41 H 0.258 0.742 42 H 0.231 0.769 43 H 0.058 0.942 44 H 0.069 0.931 45 H 0.093 0.907 46 H 0.071 0.929 47 H 0.026 0.974 48 H 0.041 0.959 49 H 0.206 0.794 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.786 -8.648 -34.290 36.210 hybrid contribution 0.417 -0.566 1.258 1.441 sum -7.370 -9.214 -33.031 35.075 Atomic orbital electron populations 1.21679 0.91810 1.03121 1.02746 1.22425 0.97617 0.98911 0.92585 0.90136 1.22766 0.81105 0.99650 0.98297 1.48690 1.13906 1.66310 1.06221 1.21302 0.81810 0.75846 0.90801 1.90746 1.28470 1.49992 1.79105 1.21568 0.99482 1.07283 0.87218 1.21472 0.98107 1.02388 0.93364 1.22539 0.80832 1.06117 0.91108 1.47873 1.09422 1.23510 1.27495 1.24515 1.01142 0.96564 0.96013 1.24305 0.92900 1.01421 1.04560 1.75074 1.25905 1.10165 1.07690 1.78298 0.88940 1.22496 1.21683 1.21921 0.98361 1.00212 0.80845 1.22180 0.94394 0.98955 0.94360 0.88423 1.21565 1.01283 0.97675 0.93327 1.20865 0.96753 0.93467 0.86674 1.42589 1.78391 1.09805 1.08246 1.19643 1.34336 0.94726 0.89608 0.90982 1.25586 1.03248 0.96225 1.01642 1.69808 1.55899 1.05755 1.30371 0.85132 0.77615 0.77788 0.79181 1.21606 1.21640 1.19399 0.93038 0.90235 0.91249 0.87035 0.88478 0.84042 0.85126 0.93218 0.92550 0.82371 0.86061 0.74173 0.76898 0.94230 0.93065 0.90749 0.92917 0.97372 0.95946 0.79395 0.93878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.31 71.98 0.67 -0.72 16 2 C -0.10 -1.35 3.09 -9.40 -0.03 -1.38 16 3 H 0.08 1.28 8.05 -2.39 -0.02 1.26 16 4 C 0.10 0.99 6.16 86.86 0.53 1.52 16 5 N -0.62 -12.22 3.33 -811.77 -2.70 -14.92 16 6 C 0.51 11.23 7.85 87.66 0.69 11.92 16 7 O -0.60 -20.94 16.31 -3.03 -0.05 -20.99 16 8 C -0.12 -0.93 4.71 29.85 0.14 -0.79 16 9 C -0.11 -1.47 4.63 30.59 0.14 -1.33 16 10 C 0.11 0.53 6.46 86.38 0.56 1.08 16 11 N -0.29 -3.96 3.44 -347.73 -1.20 -5.16 16 12 C -0.03 -0.26 11.57 83.49 0.97 0.70 16 13 C -0.07 -1.07 12.05 83.73 1.01 -0.06 16 14 N -0.32 -8.11 12.41 -58.25 -0.72 -8.83 16 15 N -0.13 -3.29 12.91 37.02 0.48 -2.82 16 16 C 0.11 2.93 5.61 86.73 0.49 3.42 16 17 C -0.08 -1.74 2.45 -9.61 -0.02 -1.76 16 18 H 0.10 1.96 8.04 -2.39 -0.02 1.94 16 19 C -0.10 -3.06 4.71 30.59 0.14 -2.92 16 20 C 0.15 6.11 6.11 86.38 0.53 6.63 16 21 N -0.75 -39.60 5.60 -343.45 -1.92 -41.53 16 22 C -0.25 -14.68 9.99 84.03 0.84 -13.84 16 23 H 0.07 4.08 7.83 -2.91 -0.02 4.05 16 24 C -0.07 -4.43 5.50 84.86 0.47 -3.96 16 25 N -0.97 -60.48 13.06 21.65 0.28 -60.20 16 26 Si 0.97 47.49 29.55 68.60 2.03 49.51 16 27 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 28 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 29 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.69 16 31 H 0.08 0.50 8.14 -2.38 -0.02 0.48 16 32 H 0.07 0.58 8.08 -2.39 -0.02 0.56 16 33 H 0.11 0.35 7.48 -2.39 -0.02 0.33 16 34 H 0.10 0.53 7.99 -2.38 -0.02 0.51 16 35 H 0.14 -0.05 8.14 -2.39 -0.02 -0.07 16 36 H 0.13 0.30 7.85 -2.39 -0.02 0.28 16 37 H 0.05 1.07 8.08 -2.39 -0.02 1.05 16 38 H 0.06 0.99 8.10 -2.38 -0.02 0.97 16 39 H 0.16 -0.83 8.07 -2.39 -0.02 -0.85 16 40 H 0.12 0.16 8.14 -2.38 -0.02 0.14 16 41 H 0.24 -0.74 8.06 -2.91 -0.02 -0.76 16 42 H 0.21 1.55 8.06 -2.91 -0.02 1.52 16 43 H 0.04 1.31 7.76 -2.39 -0.02 1.30 16 44 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.05 1.73 8.06 -2.39 -0.02 1.71 16 47 H 0.01 0.36 7.49 -2.39 -0.02 0.34 16 48 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.37 20.78 7.67 -92.71 -0.71 20.07 16 50 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -93.67 410.07 3.52 -90.15 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 0.21 Total: 16.26 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: 7.12 Total: -1.48 kcal Atomic # 7 Polarization: -127.67 SS G_CDS: -5.78 Total: -133.45 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.05 Total: -20.99 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.51 kcal Total: -93.67 3.52 -90.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104281037.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.624 kcal (2) G-P(sol) polarization free energy of solvation -93.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds