Wall clock time and date at job start Wed Apr 1 2020 00:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.65701 * 2 1 4 4 C 1.54597 * 110.83544 * 236.75434 * 2 1 3 5 5 N 1.48117 * 103.42386 * 204.44657 * 4 2 1 6 6 C 1.34774 * 127.03491 * 219.28738 * 5 4 2 7 7 O 1.21273 * 120.00396 * 179.68151 * 6 5 4 8 8 C 1.50708 * 119.99896 * 359.68055 * 6 5 4 9 9 C 1.52992 * 109.47238 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.47369 * 180.02562 * 9 8 6 11 11 C 1.39675 * 127.05499 * 124.99994 * 10 9 8 12 12 N 1.31376 * 105.90336 * 179.74044 * 11 10 9 13 13 N 1.28602 * 108.71495 * 359.97438 * 12 11 10 14 14 C 1.46510 * 124.61432 * 179.97438 * 13 12 11 15 15 N 1.28593 * 110.76555 * 0.02562 * 13 12 11 16 16 C 1.47485 * 105.93293 * 39.01828 * 5 4 2 17 17 C 1.54001 * 107.08524 * 334.78330 * 16 5 4 18 18 H 1.09006 * 110.32968 * 120.19268 * 17 16 5 19 19 C 1.52994 * 110.32718 * 242.30822 * 17 16 5 20 20 C 1.53000 * 109.47017 * 293.54392 * 19 17 16 21 21 N 1.46506 * 109.47076 * 179.97438 * 20 19 17 22 22 C 1.36938 * 119.99711 * 180.02562 * 21 20 19 23 23 H 1.07999 * 120.00629 * 359.97438 * 22 21 20 24 24 C 1.38819 * 119.99482 * 179.97438 * 22 21 20 25 25 N 1.31618 * 120.00096 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99682 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.47500 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.47337 * 119.99985 * 26 24 22 29 29 H 1.48504 * 109.47286 * 240.00174 * 26 24 22 30 30 H 1.08997 * 109.47454 * 296.81118 * 1 2 3 31 31 H 1.09001 * 109.46960 * 56.81235 * 1 2 3 32 32 H 1.08998 * 109.46678 * 176.80920 * 1 2 3 33 33 H 1.08994 * 110.61926 * 85.92781 * 4 2 1 34 34 H 1.08997 * 110.54340 * 322.92472 * 4 2 1 35 35 H 1.09005 * 109.46799 * 59.99651 * 8 6 5 36 36 H 1.08996 * 109.46936 * 300.00206 * 8 6 5 37 37 H 1.08997 * 109.47319 * 60.00005 * 9 8 6 38 38 H 1.09004 * 109.47119 * 300.00205 * 9 8 6 39 39 H 1.07994 * 127.04505 * 359.75654 * 11 10 9 40 40 H 1.08994 * 109.47510 * 90.02610 * 14 13 12 41 41 H 1.09004 * 109.46455 * 210.02078 * 14 13 12 42 42 H 1.08994 * 109.46698 * 330.01963 * 14 13 12 43 43 H 1.09005 * 109.91009 * 94.14401 * 16 5 4 44 44 H 1.08997 * 109.91469 * 215.42100 * 16 5 4 45 45 H 1.08993 * 109.47112 * 53.54527 * 19 17 16 46 46 H 1.09001 * 109.47133 * 173.54751 * 19 17 16 47 47 H 1.09003 * 109.47404 * 300.00071 * 20 19 17 48 48 H 1.09001 * 109.46875 * 60.00201 * 20 19 17 49 49 H 0.97000 * 119.99984 * 0.02562 * 21 20 19 50 50 H 0.96996 * 119.99588 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0200 0.0000 4 6 2.0799 -0.7921 -1.2084 5 7 3.4280 -1.2112 -0.7601 6 6 4.5539 -1.2496 -1.4999 7 8 5.5971 -1.6111 -0.9982 8 6 4.5165 -0.8435 -2.9507 9 6 5.9158 -0.9786 -3.5544 10 6 5.8785 -0.5718 -5.0050 11 6 6.6690 0.3965 -5.6282 12 7 6.2976 0.4080 -6.8883 13 7 5.3665 -0.4638 -7.0520 14 6 4.6994 -0.7395 -8.3270 15 7 5.0999 -1.0597 -5.9441 16 6 3.2876 -1.5716 0.6631 17 6 2.0776 -0.7915 1.2101 18 1 1.3210 -1.4806 1.5854 19 6 2.5196 0.1661 2.3183 20 6 3.0074 -0.6396 3.5240 21 7 3.4312 0.2774 4.5851 22 6 3.9095 -0.2189 5.7683 23 1 3.9740 -1.2863 5.9196 24 6 4.3116 0.6501 6.7735 25 7 4.2325 1.9509 6.5894 26 14 4.9647 -0.0269 8.3873 27 1 4.9529 -1.5113 8.3425 28 1 6.3552 0.4502 8.5977 29 1 4.1061 0.4419 9.5045 30 1 -0.3634 0.4635 0.9171 31 1 -0.3633 0.5625 -0.8600 32 1 -0.3632 -1.0261 -0.0572 33 1 2.1487 -0.1519 -2.0878 34 1 1.4549 -1.6615 -1.4123 35 1 4.1846 0.1918 -3.0297 36 1 3.8242 -1.4891 -3.4910 37 1 6.2472 -2.0139 -3.4754 38 1 6.6084 -0.3332 -3.0141 39 1 7.4297 1.0098 -5.1684 40 1 5.2403 -1.5226 -8.8582 41 1 3.6772 -1.0678 -8.1385 42 1 4.6843 0.1666 -8.9324 43 1 3.1127 -2.6432 0.7592 44 1 4.1883 -1.2894 1.2081 45 1 3.3289 0.7974 1.9517 46 1 1.6775 0.7911 2.6157 47 1 2.1980 -1.2709 3.8908 48 1 3.8495 -1.2646 3.2267 49 1 3.3730 1.2361 4.4495 50 1 4.5131 2.5580 7.2919 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104689680.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:54:43 Heat of formation + Delta-G solvation = 73.274979 kcal Electronic energy + Delta-G solvation = -28214.282562 eV Core-core repulsion = 24279.132115 eV Total energy + Delta-G solvation = -3935.150447 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -43.87346 -40.25796 -38.21949 -35.18012 -35.08449 -33.33689 -33.14663 -32.09450 -31.91193 -30.16777 -28.37083 -27.03122 -26.50004 -25.07843 -23.84509 -22.67677 -22.49645 -21.01182 -20.64594 -19.87599 -19.18694 -17.73784 -17.22605 -17.10972 -16.88394 -16.35192 -15.74915 -15.15302 -14.90603 -14.64909 -14.41805 -14.19800 -13.94255 -13.70377 -13.44114 -13.39324 -13.22878 -13.11437 -12.93464 -12.75035 -12.50830 -12.42607 -11.97556 -11.92958 -11.80016 -11.40138 -11.25978 -11.13685 -11.10905 -10.97490 -10.82294 -10.55518 -10.51751 -10.38471 -10.27227 -9.91365 -9.87190 -9.62229 -9.43470 -8.82303 -8.71008 -6.86425 -5.71846 -3.00039 1.46350 1.97184 2.08444 2.60423 2.90219 3.47068 3.52598 3.54964 3.72314 4.21766 4.40145 4.47637 4.52618 4.55787 4.59104 4.70713 4.74863 4.79016 4.86090 4.98157 5.05114 5.15293 5.21311 5.25455 5.35813 5.37001 5.48795 5.53824 5.56880 5.62767 5.72597 5.74808 5.81702 5.84239 5.93129 5.97799 6.02301 6.05022 6.08638 6.18619 6.33821 6.35043 6.41424 6.48902 6.89708 6.94515 7.50055 7.75481 7.99044 8.12685 8.47402 9.58354 10.17167 10.51528 11.51341 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016607 B = 0.001923 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.650535 B =14559.062473 C =15567.056900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 H 0.085 0.915 4 C 0.103 3.897 5 N -0.621 5.621 6 C 0.530 3.470 7 O -0.538 6.538 8 C -0.128 4.128 9 C -0.014 4.014 10 C 0.007 3.993 11 C -0.020 4.020 12 N -0.292 5.292 13 N -0.162 5.162 14 C 0.109 3.891 15 N -0.287 5.287 16 C 0.107 3.893 17 C -0.091 4.091 18 H 0.086 0.914 19 C -0.116 4.116 20 C 0.151 3.849 21 N -0.734 5.734 22 C -0.237 4.237 23 H 0.071 0.929 24 C -0.016 4.016 25 N -0.934 5.934 26 Si 0.907 3.093 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.199 0.801 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.064 0.936 44 H 0.087 0.913 45 H 0.063 0.937 46 H 0.066 0.934 47 H 0.017 0.983 48 H 0.020 0.980 49 H 0.383 0.617 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.451 -4.788 -31.529 32.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 H 0.103 0.897 4 C -0.020 4.020 5 N -0.355 5.355 6 C 0.319 3.681 7 O -0.415 6.415 8 C -0.169 4.169 9 C -0.054 4.054 10 C -0.156 4.156 11 C -0.202 4.202 12 N -0.133 5.133 13 N -0.063 5.063 14 C -0.031 4.031 15 N -0.130 5.130 16 C -0.016 4.016 17 C -0.111 4.111 18 H 0.104 0.896 19 C -0.154 4.154 20 C 0.023 3.977 21 N -0.378 5.378 22 C -0.368 4.368 23 H 0.089 0.911 24 C -0.212 4.212 25 N -0.583 5.583 26 Si 0.738 3.262 27 H -0.205 1.205 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.109 0.891 38 H 0.115 0.885 39 H 0.216 0.784 40 H 0.107 0.893 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.083 0.917 44 H 0.105 0.895 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.035 0.965 48 H 0.037 0.963 49 H 0.216 0.784 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.370 -5.387 -32.450 33.330 hybrid contribution 0.680 0.244 1.609 1.764 sum -4.690 -5.143 -30.841 31.617 Atomic orbital electron populations 1.21736 0.93821 1.02003 1.02275 1.22307 0.96107 0.99834 0.94051 0.89682 1.22583 0.83173 0.98547 0.97685 1.48823 1.08384 1.66293 1.12036 1.20240 0.82077 0.77706 0.88060 1.90742 1.29663 1.47686 1.73361 1.21567 0.99254 1.03762 0.92270 1.19648 0.96743 1.03869 0.85146 1.23217 0.96868 0.98274 0.97244 1.24724 1.03944 1.02165 0.89395 1.74055 1.05932 1.12486 1.20821 1.47908 1.25379 1.24278 1.08699 1.22106 0.98153 1.04044 0.78820 1.73986 1.24337 1.21617 0.93066 1.22238 0.99929 0.98780 0.80617 1.22151 0.96527 0.97431 0.94997 0.89583 1.21785 1.01055 0.97796 0.94805 1.20710 0.96194 0.92909 0.87862 1.42372 1.77114 1.05047 1.13255 1.19299 1.34013 0.92028 0.91477 0.91132 1.24748 1.02440 0.95329 0.98681 1.69672 1.54175 1.00830 1.33662 0.86112 0.78292 0.77923 0.83866 1.20549 1.21877 1.21908 0.91736 0.92608 0.92414 0.90405 0.90829 0.88918 0.88530 0.89123 0.88535 0.78438 0.89343 0.87944 0.87988 0.91725 0.89491 0.91854 0.91570 0.96471 0.96266 0.78361 0.93627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.16 37.16 0.34 -0.76 16 2 C -0.10 -0.99 3.20 -88.93 -0.28 -1.27 16 3 H 0.08 0.88 7.87 -51.93 -0.41 0.47 16 4 C 0.10 0.88 6.38 -2.31 -0.01 0.87 16 5 N -0.62 -7.37 3.29 -169.98 -0.56 -7.93 16 6 C 0.53 6.78 7.89 -10.98 -0.09 6.70 16 7 O -0.54 -9.05 16.32 5.56 0.09 -8.96 16 8 C -0.13 -1.16 4.61 -27.88 -0.13 -1.29 16 9 C -0.01 -0.13 5.10 -27.89 -0.14 -0.27 16 10 C 0.01 0.06 6.61 -82.25 -0.54 -0.48 16 11 C -0.02 -0.18 12.15 -17.21 -0.21 -0.39 16 12 N -0.29 -2.89 12.05 30.67 0.37 -2.52 16 13 N -0.16 -1.43 4.35 -16.63 -0.07 -1.50 16 14 C 0.11 0.40 11.57 59.85 0.69 1.10 16 15 N -0.29 -2.88 12.05 33.71 0.41 -2.48 16 16 C 0.11 1.42 6.15 -2.98 -0.02 1.40 16 17 C -0.09 -1.10 2.61 -89.25 -0.23 -1.34 16 18 H 0.09 0.98 7.85 -51.93 -0.41 0.57 16 19 C -0.12 -1.85 4.53 -26.73 -0.12 -1.97 16 20 C 0.15 3.08 6.08 -4.04 -0.02 3.05 16 21 N -0.73 -19.21 5.60 -59.90 -0.34 -19.55 16 22 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 23 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 24 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 25 N -0.93 -28.93 13.06 55.49 0.72 -28.21 16 26 Si 0.91 22.98 29.55 -169.99 -5.02 17.96 16 27 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 28 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 29 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 33 H 0.08 0.53 7.23 -51.93 -0.38 0.16 16 34 H 0.07 0.54 8.01 -51.93 -0.42 0.13 16 35 H 0.09 0.74 7.90 -51.93 -0.41 0.33 16 36 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 38 H 0.10 0.86 8.09 -51.93 -0.42 0.44 16 39 H 0.20 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 41 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 42 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.09 1.42 6.64 -51.93 -0.34 1.08 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.02 0.41 6.88 -51.93 -0.36 0.05 16 49 H 0.38 10.49 7.67 -40.82 -0.31 10.18 16 50 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 409.08 15.07 6.16 6.16 Total: -1.00 -37.10 409.08 -7.75 -44.85 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -8.49 Total: 4.41 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -1.02 Total: -2.24 kcal Atomic # 7 Polarization: -62.71 SS G_CDS: 0.53 Total: -62.18 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -37.10 -7.75 -44.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104689680.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.125 kcal (2) G-P(sol) polarization free energy of solvation -37.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds