Wall clock time and date at job start Wed Apr 1 2020 00:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.65701 * 2 1 4 4 C 1.54597 * 110.83544 * 236.75434 * 2 1 3 5 5 N 1.48117 * 103.42386 * 204.44657 * 4 2 1 6 6 C 1.34774 * 127.03491 * 219.28738 * 5 4 2 7 7 O 1.21273 * 120.00396 * 179.68151 * 6 5 4 8 8 C 1.50708 * 119.99896 * 359.68055 * 6 5 4 9 9 C 1.52992 * 109.47238 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.47369 * 180.02562 * 9 8 6 11 11 C 1.39675 * 127.05499 * 124.99994 * 10 9 8 12 12 N 1.31376 * 105.90336 * 179.74044 * 11 10 9 13 13 N 1.28602 * 108.71495 * 359.97438 * 12 11 10 14 14 C 1.46510 * 124.61432 * 179.97438 * 13 12 11 15 15 N 1.28593 * 110.76555 * 0.02562 * 13 12 11 16 16 C 1.47485 * 105.93293 * 39.01828 * 5 4 2 17 17 C 1.54001 * 107.08524 * 334.78330 * 16 5 4 18 18 H 1.09006 * 110.32968 * 120.19268 * 17 16 5 19 19 C 1.52994 * 110.32718 * 242.30822 * 17 16 5 20 20 C 1.53000 * 109.47017 * 293.54392 * 19 17 16 21 21 N 1.46506 * 109.47076 * 179.97438 * 20 19 17 22 22 C 1.36938 * 119.99711 * 180.02562 * 21 20 19 23 23 H 1.07999 * 120.00629 * 359.97438 * 22 21 20 24 24 C 1.38819 * 119.99482 * 179.97438 * 22 21 20 25 25 N 1.31618 * 120.00096 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99682 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.47500 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.47337 * 119.99985 * 26 24 22 29 29 H 1.48504 * 109.47286 * 240.00174 * 26 24 22 30 30 H 1.08997 * 109.47454 * 296.81118 * 1 2 3 31 31 H 1.09001 * 109.46960 * 56.81235 * 1 2 3 32 32 H 1.08998 * 109.46678 * 176.80920 * 1 2 3 33 33 H 1.08994 * 110.61926 * 85.92781 * 4 2 1 34 34 H 1.08997 * 110.54340 * 322.92472 * 4 2 1 35 35 H 1.09005 * 109.46799 * 59.99651 * 8 6 5 36 36 H 1.08996 * 109.46936 * 300.00206 * 8 6 5 37 37 H 1.08997 * 109.47319 * 60.00005 * 9 8 6 38 38 H 1.09004 * 109.47119 * 300.00205 * 9 8 6 39 39 H 1.07994 * 127.04505 * 359.75654 * 11 10 9 40 40 H 1.08994 * 109.47510 * 90.02610 * 14 13 12 41 41 H 1.09004 * 109.46455 * 210.02078 * 14 13 12 42 42 H 1.08994 * 109.46698 * 330.01963 * 14 13 12 43 43 H 1.09005 * 109.91009 * 94.14401 * 16 5 4 44 44 H 1.08997 * 109.91469 * 215.42100 * 16 5 4 45 45 H 1.08993 * 109.47112 * 53.54527 * 19 17 16 46 46 H 1.09001 * 109.47133 * 173.54751 * 19 17 16 47 47 H 1.09003 * 109.47404 * 300.00071 * 20 19 17 48 48 H 1.09001 * 109.46875 * 60.00201 * 20 19 17 49 49 H 0.97000 * 119.99984 * 0.02562 * 21 20 19 50 50 H 0.96996 * 119.99588 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0200 0.0000 4 6 2.0799 -0.7921 -1.2084 5 7 3.4280 -1.2112 -0.7601 6 6 4.5539 -1.2496 -1.4999 7 8 5.5971 -1.6111 -0.9982 8 6 4.5165 -0.8435 -2.9507 9 6 5.9158 -0.9786 -3.5544 10 6 5.8785 -0.5718 -5.0050 11 6 6.6690 0.3965 -5.6282 12 7 6.2976 0.4080 -6.8883 13 7 5.3665 -0.4638 -7.0520 14 6 4.6994 -0.7395 -8.3270 15 7 5.0999 -1.0597 -5.9441 16 6 3.2876 -1.5716 0.6631 17 6 2.0776 -0.7915 1.2101 18 1 1.3210 -1.4806 1.5854 19 6 2.5196 0.1661 2.3183 20 6 3.0074 -0.6396 3.5240 21 7 3.4312 0.2774 4.5851 22 6 3.9095 -0.2189 5.7683 23 1 3.9740 -1.2863 5.9196 24 6 4.3116 0.6501 6.7735 25 7 4.2325 1.9509 6.5894 26 14 4.9647 -0.0269 8.3873 27 1 4.9529 -1.5113 8.3425 28 1 6.3552 0.4502 8.5977 29 1 4.1061 0.4419 9.5045 30 1 -0.3634 0.4635 0.9171 31 1 -0.3633 0.5625 -0.8600 32 1 -0.3632 -1.0261 -0.0572 33 1 2.1487 -0.1519 -2.0878 34 1 1.4549 -1.6615 -1.4123 35 1 4.1846 0.1918 -3.0297 36 1 3.8242 -1.4891 -3.4910 37 1 6.2472 -2.0139 -3.4754 38 1 6.6084 -0.3332 -3.0141 39 1 7.4297 1.0098 -5.1684 40 1 5.2403 -1.5226 -8.8582 41 1 3.6772 -1.0678 -8.1385 42 1 4.6843 0.1666 -8.9324 43 1 3.1127 -2.6432 0.7592 44 1 4.1883 -1.2894 1.2081 45 1 3.3289 0.7974 1.9517 46 1 1.6775 0.7911 2.6157 47 1 2.1980 -1.2709 3.8908 48 1 3.8495 -1.2646 3.2267 49 1 3.3730 1.2361 4.4495 50 1 4.5131 2.5580 7.2919 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104689680.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:54:41 Heat of formation + Delta-G solvation = 47.772822 kcal Electronic energy + Delta-G solvation = -28215.388418 eV Core-core repulsion = 24279.132115 eV Total energy + Delta-G solvation = -3936.256303 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.51970 -41.22976 -39.25345 -36.86133 -35.86106 -34.59153 -33.87844 -33.44880 -32.64740 -31.74821 -29.23786 -28.12887 -27.22757 -26.29605 -25.15312 -24.00837 -23.29138 -22.07418 -21.59798 -20.84330 -20.12420 -19.16151 -18.40345 -17.89699 -17.75432 -17.31057 -16.66986 -16.63150 -16.03427 -15.65463 -15.52540 -15.37121 -15.09900 -15.02323 -14.62081 -14.24854 -14.16983 -13.92598 -13.72356 -13.49620 -13.46542 -13.33279 -13.10960 -12.89901 -12.82505 -12.70368 -12.66259 -12.43343 -12.29151 -12.07700 -11.97533 -11.90191 -11.80346 -11.60232 -11.46372 -11.25579 -11.22154 -10.94526 -10.89845 -10.06721 -9.69433 -9.01916 -7.97446 -5.26586 0.80285 1.39488 1.45424 1.47082 1.52302 1.57192 1.62716 2.00273 2.54407 3.12390 3.35963 3.42343 3.58453 3.67018 3.72756 3.82712 4.13330 4.15328 4.19464 4.30697 4.32690 4.32788 4.36045 4.42483 4.46935 4.50917 4.57067 4.59208 4.68279 4.69710 4.77300 4.78698 4.81754 4.90806 4.98469 5.02552 5.04521 5.15676 5.18026 5.25432 5.31012 5.31365 5.37152 5.42652 5.47955 5.59890 5.77969 6.25531 6.57643 7.14851 7.31041 7.33057 8.07373 8.30471 9.26489 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016607 B = 0.001923 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.650535 B =14559.062473 C =15567.056900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.097 4.097 3 H 0.076 0.924 4 C 0.104 3.896 5 N -0.623 5.623 6 C 0.524 3.476 7 O -0.589 6.589 8 C -0.113 4.113 9 C -0.009 4.009 10 C -0.003 4.003 11 C -0.028 4.028 12 N -0.310 5.310 13 N -0.161 5.161 14 C 0.095 3.905 15 N -0.300 5.300 16 C 0.106 3.894 17 C -0.082 4.082 18 H 0.101 0.899 19 C -0.101 4.101 20 C 0.149 3.851 21 N -0.749 5.749 22 C -0.248 4.248 23 H 0.074 0.926 24 C -0.078 4.078 25 N -0.970 5.970 26 Si 0.976 3.024 27 H -0.267 1.267 28 H -0.293 1.293 29 H -0.289 1.289 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.219 0.781 40 H 0.102 0.898 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.071 0.929 44 H 0.047 0.953 45 H 0.046 0.954 46 H 0.069 0.931 47 H 0.025 0.975 48 H 0.012 0.988 49 H 0.373 0.627 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.186 -5.410 -33.370 34.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.117 4.117 3 H 0.095 0.905 4 C -0.017 4.017 5 N -0.356 5.356 6 C 0.314 3.686 7 O -0.470 6.470 8 C -0.153 4.153 9 C -0.049 4.049 10 C -0.165 4.165 11 C -0.209 4.209 12 N -0.152 5.152 13 N -0.063 5.063 14 C -0.043 4.043 15 N -0.144 5.144 16 C -0.017 4.017 17 C -0.102 4.102 18 H 0.119 0.881 19 C -0.139 4.139 20 C 0.023 3.977 21 N -0.391 5.391 22 C -0.380 4.380 23 H 0.092 0.908 24 C -0.270 4.270 25 N -0.621 5.621 26 Si 0.804 3.196 27 H -0.191 1.191 28 H -0.220 1.220 29 H -0.216 1.216 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.121 0.879 34 H 0.114 0.886 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.235 0.765 40 H 0.120 0.880 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.089 0.911 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.087 0.913 47 H 0.043 0.957 48 H 0.030 0.970 49 H 0.205 0.795 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.154 -6.036 -34.331 35.584 hybrid contribution 1.201 0.397 2.105 2.455 sum -5.953 -5.638 -32.226 33.253 Atomic orbital electron populations 1.21713 0.91940 1.03059 1.02656 1.22274 0.97508 0.99009 0.92875 0.90534 1.22832 0.81249 0.99703 0.97913 1.48954 1.09676 1.65623 1.11305 1.20941 0.81464 0.76782 0.89367 1.90716 1.31596 1.50053 1.74591 1.21511 0.99507 1.04897 0.89393 1.19537 0.96935 1.03095 0.85310 1.23195 0.97373 0.98733 0.97168 1.25124 1.04261 1.02274 0.89265 1.74042 1.06675 1.13239 1.21236 1.48417 1.24933 1.23467 1.09483 1.22546 0.98913 1.05422 0.77413 1.73937 1.24754 1.22009 0.93654 1.22123 0.98670 0.99310 0.81639 1.22078 0.96273 0.97034 0.94794 0.88065 1.21620 1.00352 0.97817 0.94151 1.20893 0.95950 0.92715 0.88176 1.42620 1.77225 1.05322 1.13952 1.19700 1.33412 0.92330 0.92538 0.90777 1.25618 1.03367 0.95685 1.02305 1.69825 1.55525 1.02028 1.34672 0.85042 0.77180 0.77935 0.79418 1.19097 1.22026 1.21574 0.92742 0.90725 0.91203 0.87857 0.88610 0.87145 0.86991 0.90361 0.88722 0.76476 0.87965 0.86331 0.86451 0.91122 0.93440 0.93532 0.91260 0.95713 0.97009 0.79536 0.93930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.16 71.98 0.66 -1.01 16 2 C -0.10 -1.61 3.20 -9.70 -0.03 -1.64 16 3 H 0.08 1.43 7.87 -2.38 -0.02 1.41 16 4 C 0.10 1.45 6.38 86.61 0.55 2.01 16 5 N -0.62 -14.09 3.29 -810.10 -2.67 -16.76 16 6 C 0.52 13.23 7.89 87.66 0.69 13.92 16 7 O -0.59 -20.59 16.32 -3.01 -0.05 -20.64 16 8 C -0.11 -1.88 4.61 29.85 0.14 -1.74 16 9 C -0.01 -0.16 5.10 29.85 0.15 -0.01 16 10 C 0.00 -0.05 6.61 42.97 0.28 0.23 16 11 C -0.03 -0.48 12.15 85.11 1.03 0.56 16 12 N -0.31 -5.77 12.05 -56.87 -0.69 -6.46 16 13 N -0.16 -2.58 4.35 -206.54 -0.90 -3.48 16 14 C 0.10 0.52 11.57 127.77 1.48 2.00 16 15 N -0.30 -5.57 12.05 -47.25 -0.57 -6.14 16 16 C 0.11 2.81 6.15 86.53 0.53 3.35 16 17 C -0.08 -1.89 2.61 -9.91 -0.03 -1.92 16 18 H 0.10 2.07 7.85 -2.38 -0.02 2.05 16 19 C -0.10 -3.24 4.53 30.59 0.14 -3.10 16 20 C 0.15 6.18 6.08 86.38 0.53 6.71 16 21 N -0.75 -40.12 5.60 -343.43 -1.92 -42.04 16 22 C -0.25 -14.53 9.99 84.04 0.84 -13.69 16 23 H 0.07 4.19 7.83 -2.91 -0.02 4.17 16 24 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 25 N -0.97 -61.14 13.06 21.65 0.28 -60.85 16 26 Si 0.98 47.63 29.55 68.60 2.03 49.66 16 27 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 28 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 29 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 0.71 8.10 -2.39 -0.02 0.69 16 33 H 0.10 0.98 7.23 -2.39 -0.02 0.96 16 34 H 0.10 1.00 8.01 -2.39 -0.02 0.98 16 35 H 0.11 1.48 7.90 -2.38 -0.02 1.46 16 36 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.08 1.60 8.10 -2.39 -0.02 1.58 16 38 H 0.09 1.71 8.09 -2.38 -0.02 1.70 16 39 H 0.22 2.44 8.06 -2.91 -0.02 2.42 16 40 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 41 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 42 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 43 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 44 H 0.05 1.64 6.64 -2.39 -0.02 1.63 16 45 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 47 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.01 0.52 6.88 -2.39 -0.02 0.50 16 49 H 0.37 21.09 7.67 -92.71 -0.71 20.38 16 50 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -82.09 409.08 3.17 -78.93 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: 0.22 Total: 26.30 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: 7.44 Total: 1.48 kcal Atomic # 7 Polarization: -129.27 SS G_CDS: -6.46 Total: -135.73 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.05 Total: -20.64 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.66 kcal Total: -82.09 3.17 -78.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104689680.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.701 kcal (2) G-P(sol) polarization free energy of solvation -82.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds