Wall clock time and date at job start Wed Apr 1 2020 00:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47002 * 2 1 4 4 N 1.46501 * 109.47355 * 120.00107 * 2 1 3 5 5 C 1.34810 * 126.59472 * 275.00547 * 4 2 1 6 6 C 1.36598 * 106.83984 * 179.97438 * 5 4 2 7 7 C 1.47522 * 125.76955 * 179.97438 * 6 5 4 8 8 O 1.21595 * 120.00049 * 359.97438 * 7 6 5 9 9 N 1.34771 * 119.99729 * 179.97438 * 7 6 5 10 10 C 1.48142 * 127.84091 * 0.03028 * 9 7 6 11 11 C 1.54388 * 104.62164 * 140.38954 * 10 9 7 12 12 H 1.09001 * 110.34478 * 142.73153 * 11 10 9 13 13 C 1.52996 * 110.34560 * 264.99751 * 11 10 9 14 14 C 1.54287 * 104.95908 * 23.86856 * 11 10 9 15 15 H 1.09005 * 110.34229 * 241.02745 * 14 11 10 16 16 C 1.52997 * 110.34642 * 118.87116 * 14 11 10 17 17 C 1.53000 * 109.47060 * 175.00176 * 16 14 11 18 18 N 1.46499 * 109.46840 * 180.02562 * 17 16 14 19 19 C 1.36936 * 120.00002 * 179.97438 * 18 17 16 20 20 H 1.08004 * 120.00140 * 359.97438 * 19 18 17 21 21 C 1.38814 * 120.00175 * 180.02562 * 19 18 17 22 22 N 1.31619 * 120.00164 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00095 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47433 * 89.99724 * 23 21 19 25 25 H 1.48495 * 109.47040 * 209.99943 * 23 21 19 26 26 H 1.48501 * 109.47069 * 329.99442 * 23 21 19 27 27 C 1.48150 * 127.83687 * 179.97438 * 9 7 6 28 28 N 1.34404 * 108.45552 * 0.23538 * 6 5 4 29 29 N 1.28760 * 109.52214 * 359.59186 * 28 6 5 30 30 H 1.09003 * 109.46903 * 299.99554 * 1 2 3 31 31 H 1.08996 * 109.47148 * 59.99900 * 1 2 3 32 32 H 1.08999 * 109.47009 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46513 * 240.00076 * 2 1 3 34 34 H 1.08999 * 109.46891 * 300.00701 * 3 2 1 35 35 H 1.09001 * 109.47165 * 59.99719 * 3 2 1 36 36 H 1.08994 * 109.47256 * 180.02562 * 3 2 1 37 37 H 1.08003 * 126.57925 * 359.93888 * 5 4 2 38 38 H 1.09000 * 110.40764 * 21.60362 * 10 9 7 39 39 H 1.09001 * 110.40859 * 259.17455 * 10 9 7 40 40 H 1.09000 * 109.47431 * 175.53250 * 13 11 10 41 41 H 1.09003 * 109.46774 * 295.53928 * 13 11 10 42 42 H 1.09003 * 109.47148 * 55.53310 * 13 11 10 43 43 H 1.09002 * 109.47153 * 54.99857 * 16 14 11 44 44 H 1.09001 * 109.46832 * 295.00047 * 16 14 11 45 45 H 1.09001 * 109.47194 * 299.99650 * 17 16 14 46 46 H 1.08992 * 109.47399 * 59.99823 * 17 16 14 47 47 H 0.97005 * 120.00448 * 359.97438 * 18 17 16 48 48 H 0.96993 * 120.00311 * 180.02562 * 22 21 19 49 49 H 1.09006 * 110.40392 * 100.82407 * 27 9 7 50 50 H 1.09000 * 110.40811 * 338.39544 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0185 -0.6906 1.1961 5 6 2.1974 -0.1515 2.4187 6 6 2.6634 -1.1493 3.2269 7 6 3.0004 -1.0142 4.6568 8 8 2.8703 0.0590 5.2133 9 7 3.4525 -2.0804 5.3461 10 6 3.6759 -3.4572 4.8469 11 6 4.9835 -3.9121 5.5301 12 1 4.9250 -4.9676 5.7957 13 6 6.1799 -3.6593 4.6106 14 6 5.0914 -3.0444 6.8013 15 1 5.9976 -2.4395 6.7715 16 6 5.0836 -3.9278 8.0505 17 6 5.3162 -3.0609 9.2896 18 7 5.3093 -3.9069 10.4856 19 6 5.4998 -3.3476 11.7210 20 1 5.6555 -2.2829 11.8135 21 6 5.4939 -4.1493 12.8542 22 7 5.3047 -5.4469 12.7415 23 14 5.7530 -3.3862 14.5395 24 1 4.4403 -2.9946 15.1128 25 1 6.4093 -4.3731 15.4341 26 1 6.6156 -2.1842 14.4112 27 6 3.8399 -2.1412 6.7747 28 7 2.7683 -2.2734 2.4977 29 7 2.3890 -2.0396 1.2896 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8901 34 1 1.6766 1.9563 -0.8899 35 1 1.6767 1.9564 0.8900 36 1 3.1300 1.4426 -0.0005 37 1 2.0090 0.8730 2.7042 38 1 3.7944 -3.4541 3.7634 39 1 2.8495 -4.1057 5.1379 40 1 7.1014 -3.9109 5.1356 41 1 6.0894 -4.2785 3.7181 42 1 6.2013 -2.6081 4.3227 43 1 5.8760 -4.6723 7.9739 44 1 4.1199 -4.4302 8.1342 45 1 6.2799 -2.5585 9.2059 46 1 4.5238 -2.3165 9.3661 47 1 5.1699 -4.8633 10.4025 48 1 5.3002 -6.0070 13.5333 49 1 3.0391 -2.5839 7.3671 50 1 4.0821 -1.1452 7.1456 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104849926.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:54:38 Heat of formation + Delta-G solvation = 68.291743 kcal Electronic energy + Delta-G solvation = -28749.267581 eV Core-core repulsion = 24813.901045 eV Total energy + Delta-G solvation = -3935.366536 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.57916 -39.98400 -37.97785 -36.98590 -35.05292 -33.11742 -31.94799 -31.90353 -31.20710 -30.00979 -28.13596 -27.17374 -26.52618 -24.85920 -24.20604 -23.17491 -22.31278 -21.26747 -20.67123 -19.86941 -19.77232 -17.82053 -17.02735 -16.59388 -16.47352 -15.82841 -15.63752 -15.25777 -14.95923 -14.75027 -14.57046 -14.22219 -13.78827 -13.51984 -13.37181 -13.31352 -13.25142 -13.05976 -13.02060 -12.92801 -12.66048 -12.34426 -12.23518 -12.11510 -11.84436 -11.69285 -11.28997 -11.17784 -11.04014 -10.90111 -10.76995 -10.74327 -10.42848 -10.33354 -10.22422 -10.12057 -9.89389 -9.60524 -9.59265 -8.80594 -8.68174 -6.84879 -5.70368 -2.98459 0.81354 1.47470 1.59308 2.85326 3.16091 3.48366 3.53224 3.55058 3.69560 3.88524 4.03578 4.22759 4.27612 4.54975 4.62950 4.64182 4.71642 4.73658 4.78643 4.87795 4.90783 4.91498 5.06819 5.20729 5.31910 5.37119 5.37468 5.42684 5.55794 5.56592 5.62661 5.74840 5.81375 5.85296 5.93422 5.99440 6.00622 6.11550 6.15773 6.22929 6.30351 6.36911 6.46303 6.58185 6.93395 6.97405 7.47366 7.62641 7.76557 8.05956 8.49035 9.59855 10.19065 10.53527 11.52709 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.025641 B = 0.001944 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.735329 B =14399.855726 C =14991.729621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.143 3.857 3 C -0.170 4.170 4 N -0.355 5.355 5 C 0.093 3.907 6 C -0.093 4.093 7 C 0.621 3.379 8 O -0.543 6.543 9 N -0.605 5.605 10 C 0.095 3.905 11 C -0.104 4.104 12 H 0.089 0.911 13 C -0.140 4.140 14 C -0.092 4.092 15 H 0.082 0.918 16 C -0.116 4.116 17 C 0.151 3.849 18 N -0.734 5.734 19 C -0.237 4.237 20 H 0.070 0.930 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C 0.111 3.889 28 N -0.203 5.203 29 N -0.068 5.068 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.115 0.885 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.202 0.798 38 H 0.106 0.894 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.017 0.983 46 H 0.019 0.981 47 H 0.383 0.617 48 H 0.254 0.746 49 H 0.079 0.921 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.986 10.808 -32.313 34.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.042 3.958 3 C -0.228 4.228 4 N -0.141 5.141 5 C -0.063 4.063 6 C -0.232 4.232 7 C 0.407 3.593 8 O -0.420 6.420 9 N -0.337 5.337 10 C -0.028 4.028 11 C -0.124 4.124 12 H 0.108 0.892 13 C -0.197 4.197 14 C -0.112 4.112 15 H 0.100 0.900 16 C -0.154 4.154 17 C 0.023 3.977 18 N -0.378 5.378 19 C -0.368 4.368 20 H 0.088 0.912 21 C -0.212 4.212 22 N -0.584 5.584 23 Si 0.738 3.262 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.011 4.011 28 N -0.076 5.076 29 N -0.047 5.047 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.132 0.868 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.219 0.781 38 H 0.124 0.876 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.035 0.965 46 H 0.037 0.963 47 H 0.217 0.783 48 H 0.064 0.936 49 H 0.097 0.903 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.930 10.290 -32.744 35.227 hybrid contribution -0.101 0.970 1.381 1.691 sum -8.030 11.261 -31.362 34.277 Atomic orbital electron populations 1.22267 0.92402 1.03932 1.03918 1.21659 0.95739 0.93445 0.84938 1.22276 1.02744 0.93272 1.04493 1.50748 1.44506 1.09712 1.09141 1.23241 0.97502 1.01095 0.84508 1.21404 1.14254 0.90666 0.96899 1.16281 0.77130 0.82839 0.83029 1.90822 1.55308 1.26343 1.69527 1.48700 1.63252 1.09811 1.11938 1.22850 0.96885 0.81527 1.01521 1.22206 0.94610 1.00489 0.95054 0.89224 1.21808 0.97516 1.01410 0.98953 1.22167 0.98003 0.96497 0.94549 0.89957 1.21810 1.02313 0.98123 0.93153 1.20693 0.97645 0.93275 0.86056 1.42373 1.87260 1.06929 1.01258 1.19255 1.40765 0.92631 0.84164 0.91206 1.24742 1.03080 0.95531 0.97850 1.69659 1.57159 1.03212 1.28340 0.86186 0.77657 0.77895 0.84458 1.21765 1.21813 1.20789 1.22571 0.96752 1.01393 0.80362 1.74607 1.11231 1.23132 0.98651 1.81997 1.18092 0.91833 1.12814 0.91384 0.89617 0.91166 0.86752 0.89206 0.90971 0.91039 0.78144 0.87558 0.91082 0.92258 0.92641 0.93016 0.91421 0.91634 0.96471 0.96314 0.78336 0.93595 0.90263 0.89688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.47 9.52 37.16 0.35 -0.12 16 2 C 0.14 0.53 3.96 -67.93 -0.27 0.26 16 3 C -0.17 -0.33 8.85 37.16 0.33 0.00 16 4 N -0.36 -2.73 3.54 -54.56 -0.19 -2.92 16 5 C 0.09 0.81 10.40 -16.84 -0.18 0.64 16 6 C -0.09 -1.10 6.87 -83.55 -0.57 -1.68 16 7 C 0.62 8.82 7.91 -12.48 -0.10 8.72 16 8 O -0.54 -9.02 17.13 5.28 0.09 -8.93 16 9 N -0.61 -8.18 3.32 -170.55 -0.57 -8.74 16 10 C 0.10 1.11 6.22 -2.41 -0.02 1.09 16 11 C -0.10 -1.18 3.31 -89.22 -0.30 -1.48 16 12 H 0.09 0.97 7.71 -51.93 -0.40 0.57 16 13 C -0.14 -1.47 8.90 37.16 0.33 -1.14 16 14 C -0.09 -1.23 2.71 -89.23 -0.24 -1.47 16 15 H 0.08 1.12 7.71 -51.93 -0.40 0.72 16 16 C -0.12 -1.84 4.51 -26.73 -0.12 -1.96 16 17 C 0.15 3.09 6.13 -4.04 -0.02 3.06 16 18 N -0.73 -19.14 5.60 -59.91 -0.34 -19.48 16 19 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 20 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 21 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 22 N -0.93 -28.85 13.06 55.49 0.72 -28.13 16 23 Si 0.91 22.95 29.55 -169.99 -5.02 17.93 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 26 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 27 C 0.11 1.56 5.87 -2.42 -0.01 1.54 16 28 N -0.20 -2.44 9.35 32.85 0.31 -2.13 16 29 N -0.07 -0.73 13.78 60.35 0.83 0.10 16 30 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 0.02 8.14 -51.93 -0.42 -0.41 16 35 H 0.07 0.13 7.23 -51.93 -0.38 -0.24 16 36 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.20 1.21 7.34 -52.48 -0.39 0.82 16 38 H 0.11 1.24 5.16 -51.93 -0.27 0.97 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.06 1.05 7.98 -51.93 -0.41 0.63 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.02 0.39 7.59 -51.93 -0.39 0.00 16 47 H 0.38 10.41 7.67 -40.82 -0.31 10.10 16 48 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 49 H 0.08 1.14 7.75 -51.93 -0.40 0.74 16 50 H 0.08 1.28 7.88 -51.93 -0.41 0.87 16 LS Contribution 405.18 15.07 6.11 6.11 Total: -1.00 -35.28 405.18 -7.50 -42.78 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -8.38 Total: 3.52 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -1.06 Total: -0.10 kcal Atomic # 7 Polarization: -62.07 SS G_CDS: 0.77 Total: -61.30 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.09 Total: -8.93 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.28 -7.50 -42.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104849926.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.074 kcal (2) G-P(sol) polarization free energy of solvation -35.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds