Wall clock time and date at job start Wed Apr 1 2020 00:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47002 * 2 1 4 4 N 1.46501 * 109.47355 * 120.00107 * 2 1 3 5 5 C 1.34810 * 126.59472 * 275.00547 * 4 2 1 6 6 C 1.36598 * 106.83984 * 179.97438 * 5 4 2 7 7 C 1.47522 * 125.76955 * 179.97438 * 6 5 4 8 8 O 1.21595 * 120.00049 * 359.97438 * 7 6 5 9 9 N 1.34771 * 119.99729 * 179.97438 * 7 6 5 10 10 C 1.48142 * 127.84091 * 0.03028 * 9 7 6 11 11 C 1.54388 * 104.62164 * 140.38954 * 10 9 7 12 12 H 1.09001 * 110.34478 * 142.73153 * 11 10 9 13 13 C 1.52996 * 110.34560 * 264.99751 * 11 10 9 14 14 C 1.54287 * 104.95908 * 23.86856 * 11 10 9 15 15 H 1.09005 * 110.34229 * 241.02745 * 14 11 10 16 16 C 1.52997 * 110.34642 * 118.87116 * 14 11 10 17 17 C 1.53000 * 109.47060 * 175.00176 * 16 14 11 18 18 N 1.46499 * 109.46840 * 180.02562 * 17 16 14 19 19 C 1.36936 * 120.00002 * 179.97438 * 18 17 16 20 20 H 1.08004 * 120.00140 * 359.97438 * 19 18 17 21 21 C 1.38814 * 120.00175 * 180.02562 * 19 18 17 22 22 N 1.31619 * 120.00164 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00095 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47433 * 89.99724 * 23 21 19 25 25 H 1.48495 * 109.47040 * 209.99943 * 23 21 19 26 26 H 1.48501 * 109.47069 * 329.99442 * 23 21 19 27 27 C 1.48150 * 127.83687 * 179.97438 * 9 7 6 28 28 N 1.34404 * 108.45552 * 0.23538 * 6 5 4 29 29 N 1.28760 * 109.52214 * 359.59186 * 28 6 5 30 30 H 1.09003 * 109.46903 * 299.99554 * 1 2 3 31 31 H 1.08996 * 109.47148 * 59.99900 * 1 2 3 32 32 H 1.08999 * 109.47009 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46513 * 240.00076 * 2 1 3 34 34 H 1.08999 * 109.46891 * 300.00701 * 3 2 1 35 35 H 1.09001 * 109.47165 * 59.99719 * 3 2 1 36 36 H 1.08994 * 109.47256 * 180.02562 * 3 2 1 37 37 H 1.08003 * 126.57925 * 359.93888 * 5 4 2 38 38 H 1.09000 * 110.40764 * 21.60362 * 10 9 7 39 39 H 1.09001 * 110.40859 * 259.17455 * 10 9 7 40 40 H 1.09000 * 109.47431 * 175.53250 * 13 11 10 41 41 H 1.09003 * 109.46774 * 295.53928 * 13 11 10 42 42 H 1.09003 * 109.47148 * 55.53310 * 13 11 10 43 43 H 1.09002 * 109.47153 * 54.99857 * 16 14 11 44 44 H 1.09001 * 109.46832 * 295.00047 * 16 14 11 45 45 H 1.09001 * 109.47194 * 299.99650 * 17 16 14 46 46 H 1.08992 * 109.47399 * 59.99823 * 17 16 14 47 47 H 0.97005 * 120.00448 * 359.97438 * 18 17 16 48 48 H 0.96993 * 120.00311 * 180.02562 * 22 21 19 49 49 H 1.09006 * 110.40392 * 100.82407 * 27 9 7 50 50 H 1.09000 * 110.40811 * 338.39544 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0185 -0.6906 1.1961 5 6 2.1974 -0.1515 2.4187 6 6 2.6634 -1.1493 3.2269 7 6 3.0004 -1.0142 4.6568 8 8 2.8703 0.0590 5.2133 9 7 3.4525 -2.0804 5.3461 10 6 3.6759 -3.4572 4.8469 11 6 4.9835 -3.9121 5.5301 12 1 4.9250 -4.9676 5.7957 13 6 6.1799 -3.6593 4.6106 14 6 5.0914 -3.0444 6.8013 15 1 5.9976 -2.4395 6.7715 16 6 5.0836 -3.9278 8.0505 17 6 5.3162 -3.0609 9.2896 18 7 5.3093 -3.9069 10.4856 19 6 5.4998 -3.3476 11.7210 20 1 5.6555 -2.2829 11.8135 21 6 5.4939 -4.1493 12.8542 22 7 5.3047 -5.4469 12.7415 23 14 5.7530 -3.3862 14.5395 24 1 4.4403 -2.9946 15.1128 25 1 6.4093 -4.3731 15.4341 26 1 6.6156 -2.1842 14.4112 27 6 3.8399 -2.1412 6.7747 28 7 2.7683 -2.2734 2.4977 29 7 2.3890 -2.0396 1.2896 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8901 34 1 1.6766 1.9563 -0.8899 35 1 1.6767 1.9564 0.8900 36 1 3.1300 1.4426 -0.0005 37 1 2.0090 0.8730 2.7042 38 1 3.7944 -3.4541 3.7634 39 1 2.8495 -4.1057 5.1379 40 1 7.1014 -3.9109 5.1356 41 1 6.0894 -4.2785 3.7181 42 1 6.2013 -2.6081 4.3227 43 1 5.8760 -4.6723 7.9739 44 1 4.1199 -4.4302 8.1342 45 1 6.2799 -2.5585 9.2059 46 1 4.5238 -2.3165 9.3661 47 1 5.1699 -4.8633 10.4025 48 1 5.3002 -6.0070 13.5333 49 1 3.0391 -2.5839 7.3671 50 1 4.0821 -1.1452 7.1456 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104849926.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:54:37 Heat of formation + Delta-G solvation = 45.144161 kcal Electronic energy + Delta-G solvation = -28750.271336 eV Core-core repulsion = 24813.901045 eV Total energy + Delta-G solvation = -3936.370291 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.33040 -41.04981 -39.10449 -37.44682 -36.83420 -34.56074 -33.37517 -32.53519 -32.14004 -31.54414 -28.62920 -28.28048 -27.47879 -26.25984 -24.98672 -24.54698 -23.61577 -22.07592 -21.80542 -20.85214 -20.74357 -19.14966 -18.59100 -17.46020 -17.28486 -16.83720 -16.63154 -16.51601 -16.00838 -15.79864 -15.49339 -15.30990 -15.18357 -14.96436 -14.45436 -14.41653 -14.16541 -14.14365 -13.67958 -13.56796 -13.38235 -13.20251 -13.13668 -12.96810 -12.89798 -12.72426 -12.55053 -12.36757 -12.26116 -12.23615 -12.12543 -12.01178 -11.83547 -11.56246 -11.51873 -11.35139 -11.23309 -11.17588 -10.91220 -10.43158 -9.75471 -8.98555 -7.94502 -5.23179 0.10775 0.56238 1.03071 1.47382 1.49446 1.57942 1.84908 2.15623 2.56686 3.04698 3.29089 3.38817 3.50718 3.62592 3.71411 3.78719 3.80044 3.90045 3.99717 4.13736 4.19976 4.25312 4.31646 4.43844 4.49573 4.53854 4.60051 4.62347 4.63495 4.67715 4.76096 4.80432 4.83662 4.88839 4.92107 4.95874 5.09583 5.15451 5.16359 5.19274 5.22812 5.28221 5.39378 5.42120 5.48216 5.50880 5.56256 6.28452 6.43376 6.77280 7.03598 7.34366 8.11175 8.34702 9.29005 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.025641 B = 0.001944 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.735329 B =14399.855726 C =14991.729621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 C -0.166 4.166 4 N -0.341 5.341 5 C 0.109 3.891 6 C -0.119 4.119 7 C 0.617 3.383 8 O -0.576 6.576 9 N -0.607 5.607 10 C 0.098 3.902 11 C -0.098 4.098 12 H 0.101 0.899 13 C -0.135 4.135 14 C -0.081 4.081 15 H 0.082 0.918 16 C -0.100 4.100 17 C 0.149 3.851 18 N -0.747 5.747 19 C -0.248 4.248 20 H 0.073 0.927 21 C -0.077 4.077 22 N -0.968 5.968 23 Si 0.974 3.026 24 H -0.287 1.287 25 H -0.293 1.293 26 H -0.271 1.271 27 C 0.111 3.889 28 N -0.218 5.218 29 N -0.087 5.087 30 H 0.065 0.935 31 H 0.112 0.888 32 H 0.054 0.946 33 H 0.124 0.876 34 H 0.114 0.886 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.227 0.773 38 H 0.110 0.890 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.041 0.959 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.017 0.983 46 H 0.018 0.982 47 H 0.375 0.625 48 H 0.252 0.748 49 H 0.074 0.926 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.258 11.948 -34.153 37.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.035 3.965 3 C -0.224 4.224 4 N -0.126 5.126 5 C -0.049 4.049 6 C -0.259 4.259 7 C 0.405 3.595 8 O -0.455 6.455 9 N -0.338 5.338 10 C -0.024 4.024 11 C -0.117 4.117 12 H 0.119 0.881 13 C -0.192 4.192 14 C -0.101 4.101 15 H 0.100 0.900 16 C -0.138 4.138 17 C 0.023 3.977 18 N -0.390 5.390 19 C -0.379 4.379 20 H 0.091 0.909 21 C -0.269 4.269 22 N -0.619 5.619 23 Si 0.803 3.197 24 H -0.214 1.214 25 H -0.219 1.219 26 H -0.195 1.195 27 C -0.012 4.012 28 N -0.091 5.091 29 N -0.066 5.066 30 H 0.084 0.916 31 H 0.130 0.870 32 H 0.073 0.927 33 H 0.142 0.858 34 H 0.132 0.868 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.244 0.756 38 H 0.128 0.872 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.060 0.940 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.035 0.965 46 H 0.036 0.964 47 H 0.207 0.793 48 H 0.060 0.940 49 H 0.092 0.908 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.203 11.440 -34.648 37.399 hybrid contribution -0.070 0.696 1.820 1.950 sum -8.273 12.136 -32.828 35.964 Atomic orbital electron populations 1.22269 0.91438 1.03274 1.05128 1.22124 0.96433 0.94308 0.83627 1.22306 1.02252 0.91948 1.05921 1.51084 1.42915 1.08754 1.09887 1.23586 0.95597 1.01490 0.84222 1.21257 1.16579 0.91920 0.96129 1.16617 0.76507 0.82401 0.83935 1.90788 1.56840 1.27451 1.70471 1.48774 1.62950 1.10513 1.11601 1.22922 0.97180 0.80561 1.01747 1.22189 0.94908 1.00599 0.93976 0.88069 1.21767 0.97074 1.01087 0.99278 1.22021 0.97557 0.96208 0.94311 0.89999 1.21642 1.02345 0.97694 0.92104 1.20861 0.97358 0.93421 0.86106 1.42593 1.87167 1.07059 1.02170 1.19647 1.39832 0.92926 0.85534 0.90913 1.25583 1.03613 0.96077 1.01607 1.69810 1.58583 1.04461 1.29063 0.85130 0.77603 0.77277 0.79702 1.21396 1.21922 1.19546 1.22478 0.96964 1.00700 0.81014 1.74554 1.11860 1.23588 0.99074 1.81909 1.18737 0.93602 1.12367 0.91603 0.86981 0.92724 0.85820 0.86777 0.90577 0.91798 0.75632 0.87185 0.90564 0.91932 0.91260 0.93963 0.91112 0.91606 0.96532 0.96419 0.79335 0.93961 0.90758 0.91120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.57 9.52 71.98 0.69 0.12 16 2 C 0.13 0.70 3.96 44.99 0.18 0.88 16 3 C -0.17 -0.20 8.85 71.98 0.64 0.43 16 4 N -0.34 -4.75 3.54 -326.52 -1.16 -5.91 16 5 C 0.11 1.77 10.40 83.85 0.87 2.64 16 6 C -0.12 -2.79 6.87 40.82 0.28 -2.51 16 7 C 0.62 17.69 7.91 86.69 0.69 18.37 16 8 O -0.58 -19.45 17.13 -4.02 -0.07 -19.52 16 9 N -0.61 -16.45 3.32 -811.76 -2.69 -19.14 16 10 C 0.10 2.22 6.22 86.53 0.54 2.76 16 11 C -0.10 -2.09 3.31 -9.89 -0.03 -2.13 16 12 H 0.10 1.99 7.71 -2.39 -0.02 1.97 16 13 C -0.13 -2.63 8.90 71.98 0.64 -1.99 16 14 C -0.08 -2.11 2.71 -9.90 -0.03 -2.14 16 15 H 0.08 2.17 7.71 -2.38 -0.02 2.15 16 16 C -0.10 -3.13 4.51 30.59 0.14 -2.99 16 17 C 0.15 6.11 6.13 86.38 0.53 6.64 16 18 N -0.75 -39.30 5.60 -343.46 -1.92 -41.23 16 19 C -0.25 -14.35 9.99 84.03 0.84 -13.51 16 20 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 21 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 22 N -0.97 -60.38 13.06 21.65 0.28 -60.10 16 23 Si 0.97 47.30 29.55 68.60 2.03 49.33 16 24 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 25 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 26 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 27 C 0.11 3.14 5.87 86.52 0.51 3.65 16 28 N -0.22 -5.14 9.35 -49.99 -0.47 -5.61 16 29 N -0.09 -1.80 13.78 37.02 0.51 -1.29 16 30 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.11 -0.18 8.14 -2.39 -0.02 -0.20 16 32 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.11 -0.37 8.14 -2.39 -0.02 -0.39 16 35 H 0.08 0.06 7.23 -2.39 -0.02 0.05 16 36 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 37 H 0.23 2.31 7.34 -2.91 -0.02 2.29 16 38 H 0.11 2.48 5.16 -2.39 -0.01 2.46 16 39 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.07 2.07 7.98 -2.39 -0.02 2.06 16 45 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.02 0.74 7.59 -2.39 -0.02 0.72 16 47 H 0.37 20.67 7.67 -92.70 -0.71 19.96 16 48 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 49 H 0.07 2.17 7.75 -2.38 -0.02 2.15 16 50 H 0.07 2.20 7.88 -2.39 -0.02 2.18 16 Total: -1.00 -76.39 405.18 3.67 -72.72 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 0.22 Total: 24.58 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: 6.94 Total: 6.18 kcal Atomic # 7 Polarization: -127.84 SS G_CDS: -5.45 Total: -133.28 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.07 Total: -19.52 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -76.39 3.67 -72.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104849926.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.863 kcal (2) G-P(sol) polarization free energy of solvation -76.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds