Wall clock time and date at job start Wed Apr 1 2020 00:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.91255 * 2 1 4 4 C 1.54912 * 111.00695 * 236.10082 * 2 1 3 5 5 N 1.47431 * 104.82949 * 204.91801 * 4 2 1 6 6 C 1.34774 * 125.64341 * 204.09147 * 5 4 2 7 7 O 1.21281 * 119.99469 * 180.02562 * 6 5 4 8 8 C 1.50701 * 120.00149 * 0.03974 * 6 5 4 9 9 C 1.52999 * 109.47032 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47364 * 179.97438 * 9 8 6 11 11 N 1.46495 * 109.47318 * 179.97438 * 10 9 8 12 12 C 1.34431 * 126.82378 * 124.70864 * 11 10 9 13 13 N 1.30829 * 108.07730 * 179.89100 * 12 11 10 14 14 C 1.33242 * 109.83009 * 0.38357 * 13 12 11 15 15 N 1.30712 * 108.94523 * 359.76167 * 14 13 12 16 16 C 1.47023 * 108.70590 * 24.12456 * 5 4 2 17 17 C 1.54328 * 107.27043 * 358.94013 * 16 5 4 18 18 H 1.09000 * 110.71672 * 96.34629 * 17 16 5 19 19 C 1.52992 * 110.72106 * 219.44112 * 17 16 5 20 20 C 1.52997 * 109.47482 * 293.55011 * 19 17 16 21 21 N 1.46505 * 109.47212 * 179.97438 * 20 19 17 22 22 C 1.36936 * 119.99992 * 179.97438 * 21 20 19 23 23 H 1.08006 * 119.99834 * 0.02562 * 22 21 20 24 24 C 1.38801 * 120.00093 * 180.02562 * 22 21 20 25 25 N 1.31619 * 120.00176 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00265 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46951 * 89.99797 * 26 24 22 28 28 H 1.48500 * 109.47313 * 210.00112 * 26 24 22 29 29 H 1.48501 * 109.46991 * 330.00153 * 26 24 22 30 30 H 1.08997 * 109.47132 * 296.09832 * 1 2 3 31 31 H 1.09005 * 109.47105 * 56.10327 * 1 2 3 32 32 H 1.09001 * 109.46710 * 176.09648 * 1 2 3 33 33 H 1.08992 * 110.36783 * 86.07310 * 4 2 1 34 34 H 1.09008 * 110.45850 * 323.79680 * 4 2 1 35 35 H 1.08998 * 109.46992 * 299.99638 * 8 6 5 36 36 H 1.08998 * 109.47062 * 60.00236 * 8 6 5 37 37 H 1.09002 * 109.47236 * 299.99686 * 9 8 6 38 38 H 1.09006 * 109.47467 * 59.99510 * 9 8 6 39 39 H 1.09002 * 109.46799 * 300.00090 * 10 9 8 40 40 H 1.09006 * 109.47117 * 59.99432 * 10 9 8 41 41 H 1.08002 * 125.95970 * 0.04511 * 12 11 10 42 42 H 1.08001 * 125.52574 * 179.72078 * 14 13 12 43 43 H 1.08996 * 109.87920 * 239.53158 * 16 5 4 44 44 H 1.08996 * 109.88311 * 118.35693 * 16 5 4 45 45 H 1.09002 * 109.47103 * 173.54764 * 19 17 16 46 46 H 1.08998 * 109.46862 * 53.55576 * 19 17 16 47 47 H 1.09002 * 109.47153 * 59.99783 * 20 19 17 48 48 H 1.09001 * 109.46832 * 299.99974 * 20 19 17 49 49 H 0.96996 * 119.99606 * 0.02562 * 21 20 19 50 50 H 0.97001 * 120.00803 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0854 -0.8066 -1.2003 5 7 3.4273 -1.2430 -0.7732 6 6 4.4478 -1.5615 -1.5939 7 8 5.5128 -1.9098 -1.1300 8 6 4.2656 -1.4844 -3.0879 9 6 5.5657 -1.8951 -3.7821 10 6 5.3805 -1.8175 -5.2988 11 7 6.6256 -2.2101 -5.9635 12 6 6.7767 -3.1771 -6.8851 13 7 8.0377 -3.2142 -7.2317 14 6 8.7210 -2.2958 -6.5498 15 7 7.8996 -1.6553 -5.7601 16 6 3.4675 -1.2741 0.6961 17 6 2.0862 -0.8078 1.2023 18 1 1.4479 -1.6632 1.4239 19 6 2.2349 0.0876 2.4338 20 6 2.7848 -0.7361 3.6000 21 7 2.9278 0.1215 4.7791 22 6 3.4053 -0.4004 5.9516 23 1 3.6768 -1.4443 6.0069 24 6 3.5402 0.4120 7.0689 25 7 3.2088 1.6840 7.0016 26 14 4.1923 -0.2999 8.6682 27 1 5.6711 -0.1689 8.7017 28 1 3.6038 0.4379 9.8147 29 1 3.8203 -1.7346 8.7594 30 1 -0.3633 0.4521 0.9229 31 1 -0.3633 0.5731 -0.8530 32 1 -0.3633 -1.0253 -0.0700 33 1 2.1560 -0.1720 -2.0836 34 1 1.4526 -1.6704 -1.4043 35 1 3.4638 -2.1576 -3.3913 36 1 4.0093 -0.4633 -3.3704 37 1 6.3678 -1.2223 -3.4787 38 1 5.8217 -2.9163 -3.4994 39 1 4.5785 -2.4906 -5.6018 40 1 5.1243 -0.7964 -5.5818 41 1 5.9932 -3.8109 -7.2736 42 1 9.7817 -2.1110 -6.6353 43 1 4.2426 -0.5996 1.0600 44 1 3.6651 -2.2893 1.0402 45 1 1.2618 0.4969 2.7051 46 1 2.9222 0.9032 2.2091 47 1 3.7579 -1.1454 3.3287 48 1 2.0974 -1.5517 3.8246 49 1 2.6835 1.0589 4.7294 50 1 3.3028 2.2517 7.7825 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104876065.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:54:59 Heat of formation + Delta-G solvation = 27.314767 kcal Electronic energy + Delta-G solvation = -27858.121510 eV Core-core repulsion = 23920.978078 eV Total energy + Delta-G solvation = -3937.143431 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.95127 -41.28942 -39.29698 -36.90240 -36.48976 -34.68756 -33.48323 -33.14067 -32.15293 -31.79162 -29.27514 -27.77559 -27.18272 -25.89501 -24.29539 -23.63632 -22.88006 -22.13148 -21.89113 -21.03776 -20.21870 -19.19086 -18.43799 -17.79839 -17.43772 -17.05537 -16.68820 -16.50260 -15.98906 -15.69485 -15.61487 -15.43085 -15.27081 -15.05876 -14.82115 -14.44340 -14.30307 -13.97677 -13.68099 -13.53986 -13.35702 -13.29779 -13.08694 -12.88912 -12.76248 -12.62940 -12.58347 -12.49091 -12.29798 -12.12736 -11.92664 -11.85762 -11.64780 -11.54714 -11.18900 -11.02587 -10.96553 -10.93944 -10.79298 -10.59299 -9.69768 -9.04380 -7.99431 -5.28698 0.72799 1.43740 1.46116 1.46484 1.54446 1.60025 1.98405 2.03125 2.52472 3.32480 3.34113 3.51650 3.55315 3.55987 3.66313 3.71931 3.86797 4.09373 4.12264 4.13641 4.23172 4.30674 4.33267 4.42022 4.45300 4.51013 4.51925 4.58454 4.65424 4.67931 4.74255 4.77244 4.89820 4.93505 4.99803 5.03885 5.17246 5.19879 5.27465 5.28446 5.32355 5.33883 5.42443 5.45671 5.47708 5.56660 5.98759 6.23414 6.53555 7.13204 7.14280 7.29254 8.05221 8.28714 9.24001 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015427 B = 0.001768 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.622791 B =15829.766261 C =17272.408710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.096 4.096 3 H 0.080 0.920 4 C 0.103 3.897 5 N -0.619 5.619 6 C 0.512 3.488 7 O -0.602 6.602 8 C -0.117 4.117 9 C -0.110 4.110 10 C 0.129 3.871 11 N -0.383 5.383 12 C 0.260 3.740 13 N -0.584 5.584 14 C 0.187 3.813 15 N -0.359 5.359 16 C 0.110 3.890 17 C -0.079 4.079 18 H 0.098 0.902 19 C -0.100 4.100 20 C 0.149 3.851 21 N -0.748 5.748 22 C -0.251 4.251 23 H 0.072 0.928 24 C -0.075 4.075 25 N -0.968 5.968 26 Si 0.974 3.026 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.269 1.269 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.097 0.903 35 H 0.140 0.860 36 H 0.128 0.872 37 H 0.044 0.956 38 H 0.052 0.948 39 H 0.153 0.847 40 H 0.107 0.893 41 H 0.266 0.734 42 H 0.232 0.768 43 H 0.039 0.961 44 H 0.051 0.949 45 H 0.074 0.926 46 H 0.052 0.948 47 H 0.008 0.992 48 H 0.023 0.977 49 H 0.374 0.626 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.191 -7.503 -34.103 35.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.115 4.115 3 H 0.099 0.901 4 C -0.018 4.018 5 N -0.352 5.352 6 C 0.303 3.697 7 O -0.483 6.483 8 C -0.157 4.157 9 C -0.149 4.149 10 C 0.009 3.991 11 N -0.174 5.174 12 C -0.036 4.036 13 N -0.312 5.312 14 C -0.116 4.116 15 N -0.187 5.187 16 C -0.013 4.013 17 C -0.099 4.099 18 H 0.116 0.884 19 C -0.138 4.138 20 C 0.022 3.978 21 N -0.390 5.390 22 C -0.383 4.383 23 H 0.090 0.910 24 C -0.267 4.267 25 N -0.618 5.618 26 Si 0.803 3.197 27 H -0.216 1.216 28 H -0.216 1.216 29 H -0.194 1.194 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.129 0.871 34 H 0.115 0.885 35 H 0.158 0.842 36 H 0.146 0.854 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.171 0.829 40 H 0.125 0.875 41 H 0.281 0.719 42 H 0.248 0.752 43 H 0.058 0.942 44 H 0.069 0.931 45 H 0.093 0.907 46 H 0.071 0.929 47 H 0.026 0.974 48 H 0.041 0.959 49 H 0.206 0.794 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.249 -7.464 -33.541 34.925 hybrid contribution 0.870 0.155 1.804 2.009 sum -5.379 -7.309 -31.737 33.009 Atomic orbital electron populations 1.21679 0.91799 1.03124 1.02754 1.22423 0.97626 0.98898 0.92572 0.90137 1.22760 0.81128 0.99633 0.98291 1.48698 1.13903 1.66326 1.06234 1.21321 0.81803 0.75799 0.90811 1.90736 1.28473 1.50006 1.79105 1.21587 0.99798 1.07051 0.87230 1.21447 0.97534 1.01890 0.94045 1.22185 0.81104 1.05119 0.90696 1.50761 1.07860 1.27003 1.31772 1.27005 0.96367 0.91275 0.88919 1.70534 1.04625 1.25677 1.30377 1.26467 1.02089 0.91472 0.91573 1.78022 0.90580 1.24476 1.25623 1.21920 0.98363 1.00203 0.80834 1.22180 0.94391 0.98958 0.94361 0.88425 1.21564 1.01291 0.97668 0.93314 1.20863 0.96754 0.93465 0.86671 1.42589 1.78392 1.09802 1.08244 1.19642 1.34330 0.94723 0.89606 0.90984 1.25589 1.03254 0.96229 1.01648 1.69808 1.55900 1.05754 1.30371 0.85130 0.77623 0.77780 0.79169 1.21580 1.21646 1.19413 0.93001 0.90248 0.91254 0.87131 0.88511 0.84229 0.85433 0.93682 0.92915 0.82895 0.87526 0.71859 0.75152 0.94222 0.93072 0.90741 0.92911 0.97365 0.95950 0.79394 0.93878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.31 71.98 0.67 -0.75 16 2 C -0.10 -1.38 3.09 -9.40 -0.03 -1.41 16 3 H 0.08 1.30 8.05 -2.39 -0.02 1.28 16 4 C 0.10 1.04 6.16 86.86 0.53 1.57 16 5 N -0.62 -12.48 3.33 -811.77 -2.70 -15.18 16 6 C 0.51 11.50 7.85 87.66 0.69 12.18 16 7 O -0.60 -21.13 16.31 -3.03 -0.05 -21.17 16 8 C -0.12 -1.04 4.71 29.85 0.14 -0.90 16 9 C -0.11 -1.49 4.71 30.59 0.14 -1.35 16 10 C 0.13 0.71 6.55 86.38 0.57 1.28 16 11 N -0.38 -5.22 3.69 -352.06 -1.30 -6.52 16 12 C 0.26 2.86 12.63 180.36 2.28 5.13 16 13 N -0.58 -10.56 11.19 -204.00 -2.28 -12.84 16 14 C 0.19 3.52 13.03 180.76 2.36 5.88 16 15 N -0.36 -7.64 12.57 -61.24 -0.77 -8.41 16 16 C 0.11 2.96 5.61 86.73 0.49 3.44 16 17 C -0.08 -1.76 2.45 -9.61 -0.02 -1.78 16 18 H 0.10 1.98 8.04 -2.39 -0.02 1.96 16 19 C -0.10 -3.06 4.71 30.59 0.14 -2.92 16 20 C 0.15 6.11 6.11 86.38 0.53 6.64 16 21 N -0.75 -39.58 5.60 -343.45 -1.92 -41.50 16 22 C -0.25 -14.65 9.99 84.03 0.84 -13.82 16 23 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 24 C -0.07 -4.43 5.50 84.86 0.47 -3.97 16 25 N -0.97 -60.41 13.06 21.65 0.28 -60.13 16 26 Si 0.97 47.42 29.55 68.60 2.03 49.44 16 27 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 28 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 29 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.07 0.59 8.08 -2.39 -0.02 0.57 16 33 H 0.11 0.41 7.48 -2.39 -0.02 0.40 16 34 H 0.10 0.58 7.99 -2.38 -0.02 0.56 16 35 H 0.14 0.10 8.14 -2.39 -0.02 0.08 16 36 H 0.13 0.44 7.85 -2.39 -0.02 0.42 16 37 H 0.04 1.00 8.10 -2.39 -0.02 0.98 16 38 H 0.05 0.97 8.10 -2.38 -0.02 0.95 16 39 H 0.15 -0.66 8.09 -2.39 -0.02 -0.68 16 40 H 0.11 0.32 8.14 -2.38 -0.02 0.30 16 41 H 0.27 -0.21 8.06 -2.91 -0.02 -0.23 16 42 H 0.23 2.96 8.06 -2.91 -0.02 2.93 16 43 H 0.04 1.32 7.76 -2.39 -0.02 1.30 16 44 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.05 1.73 8.06 -2.39 -0.02 1.71 16 47 H 0.01 0.36 7.49 -2.39 -0.02 0.34 16 48 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.37 20.77 7.67 -92.71 -0.71 20.06 16 50 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -91.36 411.02 3.28 -88.08 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.21 Total: 19.00 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 9.79 Total: 9.24 kcal Atomic # 7 Polarization: -135.89 SS G_CDS: -8.69 Total: -144.59 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.05 Total: -21.17 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.44 kcal Total: -91.36 3.28 -88.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104876065.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.393 kcal (2) G-P(sol) polarization free energy of solvation -91.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds