Wall clock time and date at job start Wed Apr 1 2020 00:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.91255 * 2 1 4 4 C 1.54912 * 111.00695 * 236.10082 * 2 1 3 5 5 N 1.47431 * 104.82949 * 204.91801 * 4 2 1 6 6 C 1.34774 * 125.64341 * 204.09147 * 5 4 2 7 7 O 1.21281 * 119.99469 * 180.02562 * 6 5 4 8 8 C 1.50701 * 120.00149 * 0.03974 * 6 5 4 9 9 C 1.52999 * 109.47032 * 180.02562 * 8 6 5 10 10 C 1.50702 * 109.47408 * 179.97438 * 9 8 6 11 11 C 1.35342 * 126.75624 * 124.70655 * 10 9 8 12 12 N 1.35310 * 106.18131 * 179.85658 * 11 10 9 13 13 C 1.46490 * 125.87245 * 180.19139 * 12 11 10 14 14 N 1.28717 * 108.25616 * 0.41830 * 12 11 10 15 15 N 1.28633 * 110.17897 * 359.73359 * 14 12 11 16 16 C 1.47023 * 108.70590 * 24.12456 * 5 4 2 17 17 C 1.54328 * 107.27043 * 358.94013 * 16 5 4 18 18 H 1.09000 * 110.71672 * 96.34629 * 17 16 5 19 19 C 1.52992 * 110.72106 * 219.44112 * 17 16 5 20 20 C 1.52997 * 109.47482 * 293.55011 * 19 17 16 21 21 N 1.46505 * 109.47212 * 179.97438 * 20 19 17 22 22 C 1.36936 * 119.99992 * 179.97438 * 21 20 19 23 23 H 1.08006 * 119.99834 * 0.02562 * 22 21 20 24 24 C 1.38801 * 120.00093 * 180.02562 * 22 21 20 25 25 N 1.31622 * 120.00145 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 120.00180 * 0.02562 * 24 22 21 27 27 H 1.48492 * 109.47586 * 89.99558 * 26 24 22 28 28 H 1.48505 * 109.47293 * 210.00502 * 26 24 22 29 29 H 1.48505 * 109.46772 * 329.99807 * 26 24 22 30 30 H 1.08997 * 109.47132 * 296.09832 * 1 2 3 31 31 H 1.09005 * 109.47105 * 56.10327 * 1 2 3 32 32 H 1.09001 * 109.46710 * 176.09648 * 1 2 3 33 33 H 1.08992 * 110.36783 * 86.07310 * 4 2 1 34 34 H 1.09008 * 110.45850 * 323.79680 * 4 2 1 35 35 H 1.08998 * 109.46992 * 299.99638 * 8 6 5 36 36 H 1.08998 * 109.47062 * 60.00236 * 8 6 5 37 37 H 1.09002 * 109.47236 * 299.99686 * 9 8 6 38 38 H 1.09006 * 109.47467 * 59.99510 * 9 8 6 39 39 H 1.08008 * 126.90773 * 0.02562 * 11 10 9 40 40 H 1.09007 * 109.46924 * 270.29219 * 13 12 11 41 41 H 1.08998 * 109.47565 * 30.29320 * 13 12 11 42 42 H 1.09004 * 109.47656 * 150.29400 * 13 12 11 43 43 H 1.08996 * 109.87920 * 239.53158 * 16 5 4 44 44 H 1.08996 * 109.88311 * 118.35693 * 16 5 4 45 45 H 1.09002 * 109.47103 * 173.54764 * 19 17 16 46 46 H 1.08998 * 109.46862 * 53.55576 * 19 17 16 47 47 H 1.09002 * 109.47153 * 59.99783 * 20 19 17 48 48 H 1.09001 * 109.46832 * 299.99974 * 20 19 17 49 49 H 0.96996 * 119.99606 * 0.02562 * 21 20 19 50 50 H 0.97010 * 119.99864 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0854 -0.8066 -1.2003 5 7 3.4273 -1.2430 -0.7732 6 6 4.4478 -1.5615 -1.5939 7 8 5.5128 -1.9098 -1.1300 8 6 4.2656 -1.4844 -3.0879 9 6 5.5657 -1.8951 -3.7821 10 6 5.3833 -1.8186 -5.2761 11 6 6.1416 -1.1160 -6.1496 12 7 5.6148 -1.3444 -7.3749 13 6 6.1096 -0.7926 -8.6384 14 7 4.6013 -2.1261 -7.2387 15 7 4.4366 -2.4272 -5.9990 16 6 3.4675 -1.2741 0.6961 17 6 2.0862 -0.8078 1.2023 18 1 1.4479 -1.6632 1.4239 19 6 2.2349 0.0876 2.4338 20 6 2.7848 -0.7361 3.6000 21 7 2.9278 0.1215 4.7791 22 6 3.4053 -0.4004 5.9516 23 1 3.6768 -1.4443 6.0069 24 6 3.5402 0.4120 7.0689 25 7 3.9997 -0.0896 8.1957 26 14 3.0699 2.2173 6.9734 27 1 1.6392 2.3761 7.3381 28 1 3.9108 2.9985 7.9157 29 1 3.2859 2.7125 5.5901 30 1 -0.3633 0.4521 0.9229 31 1 -0.3633 0.5731 -0.8530 32 1 -0.3633 -1.0253 -0.0700 33 1 2.1560 -0.1720 -2.0836 34 1 1.4526 -1.6704 -1.4043 35 1 3.4638 -2.1576 -3.3913 36 1 4.0093 -0.4633 -3.3704 37 1 6.3678 -1.2223 -3.4787 38 1 5.8217 -2.9163 -3.4994 39 1 6.9971 -0.4994 -5.9160 40 1 5.6189 0.1605 -8.8356 41 1 7.1867 -0.6397 -8.5712 42 1 5.8913 -1.4881 -9.4489 43 1 4.2426 -0.5996 1.0600 44 1 3.6651 -2.2893 1.0402 45 1 1.2618 0.4969 2.7051 46 1 2.9222 0.9032 2.2091 47 1 3.7579 -1.1454 3.3287 48 1 2.0974 -1.5517 3.8246 49 1 2.6835 1.0589 4.7294 50 1 4.0936 0.4781 8.9767 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105114566.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:54:48 Heat of formation + Delta-G solvation = 65.067853 kcal Electronic energy + Delta-G solvation = -28052.060652 eV Core-core repulsion = 24116.554317 eV Total energy + Delta-G solvation = -3935.506335 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -43.65653 -40.31975 -38.26214 -35.56845 -35.30322 -33.83683 -33.29734 -32.07817 -30.87773 -30.34952 -28.45294 -27.55790 -26.57695 -25.32008 -23.79721 -22.51414 -22.14842 -21.33662 -20.77524 -20.09850 -19.24654 -17.75219 -17.50853 -17.09096 -16.93006 -16.53518 -15.82860 -15.23262 -14.96313 -14.65775 -14.38631 -14.19725 -14.03992 -14.03016 -13.75140 -13.47068 -13.34250 -13.01103 -12.86862 -12.66168 -12.64567 -12.53744 -12.24189 -11.96679 -11.85830 -11.65433 -11.54883 -11.35565 -11.22041 -11.05360 -10.89446 -10.63899 -10.48865 -10.47836 -10.25060 -10.03434 -9.92364 -9.55117 -9.52363 -8.85570 -8.70962 -7.19018 -5.72937 -3.08288 1.15506 1.90217 2.11783 2.56620 2.88645 3.39568 3.41937 3.47189 3.83121 4.08000 4.21045 4.31241 4.36617 4.48781 4.54495 4.60084 4.62367 4.66309 4.73573 4.87022 4.98151 5.08299 5.15603 5.19770 5.26173 5.28946 5.34819 5.40554 5.51348 5.58070 5.63361 5.65179 5.71103 5.75900 5.83300 5.89405 5.92060 5.96480 6.01252 6.07684 6.09811 6.18408 6.24498 6.34334 6.77158 6.80980 7.43033 8.03964 8.08446 8.10350 8.46133 9.25533 9.97841 10.17741 11.45583 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.021186 B = 0.001801 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.340971 B =15545.272394 C =16108.312999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 H 0.086 0.914 4 C 0.103 3.897 5 N -0.619 5.619 6 C 0.526 3.474 7 O -0.540 6.540 8 C -0.128 4.128 9 C -0.017 4.017 10 C -0.016 4.016 11 C -0.048 4.048 12 N -0.296 5.296 13 C 0.081 3.919 14 N -0.087 5.087 15 N -0.264 5.264 16 C 0.110 3.890 17 C -0.089 4.089 18 H 0.088 0.912 19 C -0.119 4.119 20 C 0.155 3.845 21 N -0.757 5.757 22 C -0.243 4.243 23 H 0.090 0.910 24 C 0.003 3.997 25 N -0.935 5.935 26 Si 0.886 3.114 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.278 1.278 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.192 0.808 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.063 0.937 47 H 0.028 0.972 48 H 0.027 0.973 49 H 0.360 0.640 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.575 1.567 -36.519 36.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 H 0.104 0.896 4 C -0.020 4.020 5 N -0.353 5.353 6 C 0.315 3.685 7 O -0.417 6.417 8 C -0.168 4.168 9 C -0.057 4.057 10 C -0.154 4.154 11 C -0.199 4.199 12 N -0.090 5.090 13 C -0.060 4.060 14 N -0.067 5.067 15 N -0.131 5.131 16 C -0.012 4.012 17 C -0.109 4.109 18 H 0.106 0.894 19 C -0.157 4.157 20 C 0.028 3.972 21 N -0.403 5.403 22 C -0.373 4.373 23 H 0.108 0.892 24 C -0.193 4.193 25 N -0.583 5.583 26 Si 0.716 3.284 27 H -0.211 1.211 28 H -0.218 1.218 29 H -0.204 1.204 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.119 0.881 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.209 0.791 40 H 0.110 0.890 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.082 0.918 47 H 0.046 0.954 48 H 0.045 0.955 49 H 0.192 0.808 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.948 0.441 -36.937 36.952 hybrid contribution 0.619 2.033 0.417 2.166 sum -0.329 2.474 -36.520 36.605 Atomic orbital electron populations 1.21701 0.93588 1.02233 1.02311 1.22431 0.96323 0.99480 0.93878 0.89577 1.22449 0.83376 0.98369 0.97824 1.48540 1.12372 1.67019 1.07386 1.20304 0.82726 0.76893 0.88550 1.90733 1.25861 1.47328 1.77765 1.21553 1.00176 1.04090 0.91019 1.19620 0.97282 1.04329 0.84428 1.22042 0.95518 0.99862 0.98000 1.23446 1.04780 1.07357 0.84278 1.47242 1.20755 1.32286 1.08695 1.22277 1.01122 1.00654 0.81966 1.78322 1.05029 1.08935 1.14417 1.75055 1.21430 1.20232 0.96370 1.22115 0.98095 1.02231 0.78738 1.22273 0.95307 0.98797 0.94511 0.89357 1.21777 1.01735 0.98241 0.93945 1.20672 0.97749 0.93090 0.85736 1.42714 1.80071 1.08414 1.09079 1.19085 1.35071 0.96506 0.86640 0.89224 1.24680 1.01324 0.97617 0.95674 1.69712 1.52065 1.35176 1.01353 0.86524 0.78134 0.86738 0.76996 1.21124 1.21757 1.20379 0.91677 0.92514 0.92249 0.90772 0.91023 0.88145 0.89108 0.89196 0.89089 0.79125 0.89013 0.88226 0.88001 0.90750 0.91097 0.91379 0.91782 0.95442 0.95532 0.80754 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.31 37.16 0.35 -0.72 16 2 C -0.10 -0.92 3.09 -88.47 -0.27 -1.19 16 3 H 0.09 0.80 8.05 -51.93 -0.42 0.38 16 4 C 0.10 0.87 6.16 -2.52 -0.02 0.86 16 5 N -0.62 -7.16 3.33 -170.51 -0.57 -7.73 16 6 C 0.53 6.53 7.85 -10.99 -0.09 6.44 16 7 O -0.54 -8.78 16.31 5.56 0.09 -8.69 16 8 C -0.13 -1.15 4.68 -27.88 -0.13 -1.28 16 9 C -0.02 -0.15 5.08 -27.88 -0.14 -0.29 16 10 C -0.02 -0.15 6.50 -82.78 -0.54 -0.68 16 11 C -0.05 -0.31 11.54 -17.05 -0.20 -0.50 16 12 N -0.30 -1.97 3.74 -68.06 -0.25 -2.22 16 13 C 0.08 0.11 11.39 59.84 0.68 0.80 16 14 N -0.09 -0.91 13.17 60.35 0.79 -0.11 16 15 N -0.26 -3.01 12.40 33.28 0.41 -2.60 16 16 C 0.11 1.45 5.61 -3.06 -0.02 1.43 16 17 C -0.09 -1.03 2.45 -88.79 -0.22 -1.24 16 18 H 0.09 0.98 8.04 -51.93 -0.42 0.57 16 19 C -0.12 -1.71 4.71 -26.74 -0.13 -1.83 16 20 C 0.15 2.98 6.11 -4.04 -0.02 2.95 16 21 N -0.76 -18.36 5.41 -59.91 -0.32 -18.68 16 22 C -0.24 -7.07 10.47 -15.06 -0.16 -7.23 16 23 H 0.09 2.79 8.06 -52.48 -0.42 2.37 16 24 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 25 N -0.93 -29.90 13.97 55.49 0.78 -29.13 16 26 Si 0.89 22.41 27.74 -169.99 -4.71 17.69 16 27 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 28 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 29 H -0.28 -6.59 6.52 56.52 0.37 -6.23 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 33 H 0.07 0.51 7.48 -51.93 -0.39 0.12 16 34 H 0.07 0.55 7.99 -51.92 -0.41 0.14 16 35 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.09 0.68 7.85 -51.93 -0.41 0.27 16 37 H 0.09 0.72 8.08 -51.93 -0.42 0.30 16 38 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 39 H 0.19 0.51 8.06 -52.48 -0.42 0.09 16 40 H 0.09 0.01 8.14 -51.93 -0.42 -0.41 16 41 H 0.10 -0.10 8.14 -51.93 -0.42 -0.52 16 42 H 0.10 0.08 8.14 -51.93 -0.42 -0.34 16 43 H 0.07 1.11 7.76 -51.93 -0.40 0.70 16 44 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.06 0.94 8.06 -51.93 -0.42 0.52 16 47 H 0.03 0.55 7.49 -51.93 -0.39 0.16 16 48 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.36 8.44 5.53 -40.82 -0.23 8.22 16 50 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 LS Contribution 407.45 15.07 6.14 6.14 Total: -1.00 -38.35 407.45 -7.20 -45.55 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -8.56 Total: 2.29 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -0.99 Total: -2.51 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: 0.84 Total: -60.47 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.09 Total: -8.69 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.71 Total: 17.69 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -38.35 -7.20 -45.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105114566.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.614 kcal (2) G-P(sol) polarization free energy of solvation -38.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds