Wall clock time and date at job start Wed Apr 1 2020 00:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.91255 * 2 1 4 4 C 1.54912 * 111.00695 * 236.10082 * 2 1 3 5 5 N 1.47431 * 104.82949 * 204.91801 * 4 2 1 6 6 C 1.34774 * 125.64341 * 204.09147 * 5 4 2 7 7 O 1.21281 * 119.99469 * 180.02562 * 6 5 4 8 8 C 1.50701 * 120.00149 * 0.03974 * 6 5 4 9 9 C 1.52999 * 109.47032 * 180.02562 * 8 6 5 10 10 C 1.50702 * 109.47408 * 179.97438 * 9 8 6 11 11 C 1.35342 * 126.75624 * 124.70655 * 10 9 8 12 12 N 1.35310 * 106.18131 * 179.85658 * 11 10 9 13 13 C 1.46490 * 125.87245 * 180.19139 * 12 11 10 14 14 N 1.28717 * 108.25616 * 0.41830 * 12 11 10 15 15 N 1.28633 * 110.17897 * 359.73359 * 14 12 11 16 16 C 1.47023 * 108.70590 * 24.12456 * 5 4 2 17 17 C 1.54328 * 107.27043 * 358.94013 * 16 5 4 18 18 H 1.09000 * 110.71672 * 96.34629 * 17 16 5 19 19 C 1.52992 * 110.72106 * 219.44112 * 17 16 5 20 20 C 1.52997 * 109.47482 * 293.55011 * 19 17 16 21 21 N 1.46505 * 109.47212 * 179.97438 * 20 19 17 22 22 C 1.36936 * 119.99992 * 179.97438 * 21 20 19 23 23 H 1.08006 * 119.99834 * 0.02562 * 22 21 20 24 24 C 1.38801 * 120.00093 * 180.02562 * 22 21 20 25 25 N 1.31622 * 120.00145 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 120.00180 * 0.02562 * 24 22 21 27 27 H 1.48492 * 109.47586 * 89.99558 * 26 24 22 28 28 H 1.48505 * 109.47293 * 210.00502 * 26 24 22 29 29 H 1.48505 * 109.46772 * 329.99807 * 26 24 22 30 30 H 1.08997 * 109.47132 * 296.09832 * 1 2 3 31 31 H 1.09005 * 109.47105 * 56.10327 * 1 2 3 32 32 H 1.09001 * 109.46710 * 176.09648 * 1 2 3 33 33 H 1.08992 * 110.36783 * 86.07310 * 4 2 1 34 34 H 1.09008 * 110.45850 * 323.79680 * 4 2 1 35 35 H 1.08998 * 109.46992 * 299.99638 * 8 6 5 36 36 H 1.08998 * 109.47062 * 60.00236 * 8 6 5 37 37 H 1.09002 * 109.47236 * 299.99686 * 9 8 6 38 38 H 1.09006 * 109.47467 * 59.99510 * 9 8 6 39 39 H 1.08008 * 126.90773 * 0.02562 * 11 10 9 40 40 H 1.09007 * 109.46924 * 270.29219 * 13 12 11 41 41 H 1.08998 * 109.47565 * 30.29320 * 13 12 11 42 42 H 1.09004 * 109.47656 * 150.29400 * 13 12 11 43 43 H 1.08996 * 109.87920 * 239.53158 * 16 5 4 44 44 H 1.08996 * 109.88311 * 118.35693 * 16 5 4 45 45 H 1.09002 * 109.47103 * 173.54764 * 19 17 16 46 46 H 1.08998 * 109.46862 * 53.55576 * 19 17 16 47 47 H 1.09002 * 109.47153 * 59.99783 * 20 19 17 48 48 H 1.09001 * 109.46832 * 299.99974 * 20 19 17 49 49 H 0.96996 * 119.99606 * 0.02562 * 21 20 19 50 50 H 0.97010 * 119.99864 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0854 -0.8066 -1.2003 5 7 3.4273 -1.2430 -0.7732 6 6 4.4478 -1.5615 -1.5939 7 8 5.5128 -1.9098 -1.1300 8 6 4.2656 -1.4844 -3.0879 9 6 5.5657 -1.8951 -3.7821 10 6 5.3833 -1.8186 -5.2761 11 6 6.1416 -1.1160 -6.1496 12 7 5.6148 -1.3444 -7.3749 13 6 6.1096 -0.7926 -8.6384 14 7 4.6013 -2.1261 -7.2387 15 7 4.4366 -2.4272 -5.9990 16 6 3.4675 -1.2741 0.6961 17 6 2.0862 -0.8078 1.2023 18 1 1.4479 -1.6632 1.4239 19 6 2.2349 0.0876 2.4338 20 6 2.7848 -0.7361 3.6000 21 7 2.9278 0.1215 4.7791 22 6 3.4053 -0.4004 5.9516 23 1 3.6768 -1.4443 6.0069 24 6 3.5402 0.4120 7.0689 25 7 3.9997 -0.0896 8.1957 26 14 3.0699 2.2173 6.9734 27 1 1.6392 2.3761 7.3381 28 1 3.9108 2.9985 7.9157 29 1 3.2859 2.7125 5.5901 30 1 -0.3633 0.4521 0.9229 31 1 -0.3633 0.5731 -0.8530 32 1 -0.3633 -1.0253 -0.0700 33 1 2.1560 -0.1720 -2.0836 34 1 1.4526 -1.6704 -1.4043 35 1 3.4638 -2.1576 -3.3913 36 1 4.0093 -0.4633 -3.3704 37 1 6.3678 -1.2223 -3.4787 38 1 5.8217 -2.9163 -3.4994 39 1 6.9971 -0.4994 -5.9160 40 1 5.6189 0.1605 -8.8356 41 1 7.1867 -0.6397 -8.5712 42 1 5.8913 -1.4881 -9.4489 43 1 4.2426 -0.5996 1.0600 44 1 3.6651 -2.2893 1.0402 45 1 1.2618 0.4969 2.7051 46 1 2.9222 0.9032 2.2091 47 1 3.7579 -1.1454 3.3287 48 1 2.0974 -1.5517 3.8246 49 1 2.6835 1.0589 4.7294 50 1 4.0936 0.4781 8.9767 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105114566.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:54:46 Heat of formation + Delta-G solvation = 37.812034 kcal Electronic energy + Delta-G solvation = -28053.242553 eV Core-core repulsion = 24116.554317 eV Total energy + Delta-G solvation = -3936.688236 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.21302 -41.26127 -39.25770 -37.02340 -36.10885 -34.70072 -34.38292 -33.56184 -32.18801 -31.26977 -29.02370 -28.57757 -27.30404 -26.40747 -25.09711 -23.71599 -23.01951 -22.19785 -21.80655 -21.02570 -20.15420 -19.61437 -18.33556 -17.70352 -17.56702 -17.45666 -16.68354 -16.58069 -15.98337 -15.81486 -15.70249 -15.44288 -14.94821 -14.87500 -14.52566 -14.36300 -14.21004 -14.03431 -13.89927 -13.64033 -13.51153 -13.41962 -13.28144 -12.99659 -12.92962 -12.63789 -12.59007 -12.51425 -12.32695 -12.28864 -12.05338 -11.84306 -11.67846 -11.63067 -11.56609 -11.20754 -11.01412 -10.96750 -10.89107 -10.13235 -9.67838 -9.31007 -8.03663 -5.38055 0.65215 1.37200 1.42267 1.46193 1.49632 1.58616 1.61027 2.00678 2.48359 3.26958 3.27347 3.43160 3.53170 3.56164 3.72435 3.81860 3.96727 4.03337 4.14022 4.19833 4.25674 4.30901 4.35680 4.40038 4.43560 4.49596 4.53541 4.64880 4.66189 4.66402 4.72383 4.76281 4.79512 4.90634 4.94843 5.00948 5.04014 5.11750 5.17038 5.22580 5.27611 5.28713 5.34215 5.42195 5.56074 5.69766 5.74147 6.20232 6.52671 7.07099 7.13018 7.50670 7.82737 8.03387 9.17992 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.021186 B = 0.001801 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.340971 B =15545.272394 C =16108.312999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.092 4.092 3 H 0.089 0.911 4 C 0.101 3.899 5 N -0.619 5.619 6 C 0.521 3.479 7 O -0.588 6.588 8 C -0.114 4.114 9 C -0.011 4.011 10 C -0.037 4.037 11 C -0.031 4.031 12 N -0.288 5.288 13 C 0.069 3.931 14 N -0.123 5.123 15 N -0.302 5.302 16 C 0.109 3.891 17 C -0.081 4.081 18 H 0.095 0.905 19 C -0.104 4.104 20 C 0.150 3.850 21 N -0.759 5.759 22 C -0.242 4.242 23 H 0.051 0.949 24 C -0.067 4.067 25 N -0.985 5.985 26 Si 0.962 3.038 27 H -0.274 1.274 28 H -0.295 1.295 29 H -0.250 1.250 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.113 0.887 37 H 0.097 0.903 38 H 0.070 0.930 39 H 0.231 0.769 40 H 0.108 0.892 41 H 0.129 0.871 42 H 0.105 0.895 43 H 0.051 0.949 44 H 0.051 0.949 45 H 0.082 0.918 46 H 0.064 0.936 47 H 0.014 0.986 48 H 0.025 0.975 49 H 0.367 0.633 50 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.756 4.439 -39.696 39.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.111 4.111 3 H 0.107 0.893 4 C -0.021 4.021 5 N -0.352 5.352 6 C 0.312 3.688 7 O -0.469 6.469 8 C -0.154 4.154 9 C -0.051 4.051 10 C -0.176 4.176 11 C -0.183 4.183 12 N -0.082 5.082 13 C -0.070 4.070 14 N -0.102 5.102 15 N -0.168 5.168 16 C -0.014 4.014 17 C -0.101 4.101 18 H 0.113 0.887 19 C -0.142 4.142 20 C 0.024 3.976 21 N -0.405 5.405 22 C -0.373 4.373 23 H 0.069 0.931 24 C -0.258 4.258 25 N -0.635 5.635 26 Si 0.788 3.212 27 H -0.199 1.199 28 H -0.222 1.222 29 H -0.174 1.174 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.118 0.882 34 H 0.103 0.897 35 H 0.122 0.878 36 H 0.131 0.869 37 H 0.116 0.884 38 H 0.089 0.911 39 H 0.247 0.753 40 H 0.127 0.873 41 H 0.148 0.852 42 H 0.123 0.877 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.101 0.899 46 H 0.083 0.917 47 H 0.032 0.968 48 H 0.043 0.957 49 H 0.201 0.799 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.188 3.309 -40.208 40.403 hybrid contribution 1.079 1.040 1.363 2.026 sum -1.109 4.349 -38.845 39.103 Atomic orbital electron populations 1.21692 0.92001 1.02902 1.02913 1.22401 0.97446 0.99057 0.92172 0.89310 1.22694 0.81586 0.99298 0.98475 1.48653 1.13587 1.66427 1.06549 1.20973 0.82074 0.75837 0.89946 1.90706 1.27854 1.49528 1.78771 1.21498 1.00419 1.05439 0.88024 1.19509 0.97459 1.03342 0.84751 1.22127 0.96286 1.01067 0.98091 1.24011 1.04637 1.06099 0.83571 1.47656 1.19487 1.30813 1.10256 1.22741 1.03058 1.01181 0.80033 1.78235 1.06999 1.10857 1.14143 1.74980 1.23029 1.21612 0.97163 1.21982 0.98587 1.00560 0.80246 1.22184 0.94477 0.99010 0.94421 0.88722 1.21633 1.01961 0.97805 0.92806 1.20856 0.97342 0.93415 0.85979 1.42712 1.79665 1.09261 1.08869 1.19057 1.34427 0.95085 0.88686 0.93117 1.25608 1.01809 1.03294 0.95092 1.69912 1.53948 1.37302 1.02362 0.85306 0.77936 0.79675 0.78240 1.19934 1.22192 1.17437 0.92158 0.90665 0.91789 0.88196 0.89676 0.87783 0.86857 0.88411 0.91122 0.75284 0.87317 0.85224 0.87664 0.93060 0.93098 0.89906 0.91743 0.96775 0.95734 0.79915 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.31 71.98 0.67 -0.90 16 2 C -0.09 -1.37 3.09 -9.40 -0.03 -1.40 16 3 H 0.09 1.33 8.05 -2.39 -0.02 1.31 16 4 C 0.10 1.42 6.16 86.86 0.53 1.96 16 5 N -0.62 -13.79 3.33 -811.77 -2.70 -16.49 16 6 C 0.52 12.81 7.85 87.66 0.69 13.50 16 7 O -0.59 -19.81 16.31 -3.03 -0.05 -19.86 16 8 C -0.11 -1.90 4.68 29.85 0.14 -1.76 16 9 C -0.01 -0.19 5.08 29.85 0.15 -0.04 16 10 C -0.04 -0.62 6.50 41.60 0.27 -0.35 16 11 C -0.03 -0.33 11.54 83.49 0.96 0.64 16 12 N -0.29 -3.23 3.74 -369.25 -1.38 -4.62 16 13 C 0.07 0.00 11.39 127.77 1.46 1.46 16 14 N -0.12 -2.46 13.17 37.02 0.49 -1.97 16 15 N -0.30 -6.79 12.40 -48.61 -0.60 -7.39 16 16 C 0.11 2.90 5.61 86.73 0.49 3.39 16 17 C -0.08 -1.75 2.45 -9.61 -0.02 -1.78 16 18 H 0.09 1.96 8.04 -2.39 -0.02 1.94 16 19 C -0.10 -2.82 4.71 30.59 0.14 -2.68 16 20 C 0.15 5.81 6.11 86.38 0.53 6.33 16 21 N -0.76 -36.59 5.41 -343.45 -1.86 -38.44 16 22 C -0.24 -14.39 10.47 84.03 0.88 -13.51 16 23 H 0.05 3.34 8.06 -2.91 -0.02 3.31 16 24 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 25 N -0.98 -64.76 13.97 21.65 0.30 -64.45 16 26 Si 0.96 46.01 27.74 68.60 1.90 47.91 16 27 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 28 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 29 H -0.25 -10.70 6.52 99.48 0.65 -10.05 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.62 8.14 -2.38 -0.02 0.61 16 32 H 0.06 0.69 8.08 -2.39 -0.02 0.67 16 33 H 0.10 0.96 7.48 -2.39 -0.02 0.94 16 34 H 0.09 1.03 7.99 -2.38 -0.02 1.01 16 35 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.11 1.39 7.85 -2.39 -0.02 1.37 16 37 H 0.10 1.48 8.08 -2.39 -0.02 1.46 16 38 H 0.07 1.47 8.10 -2.38 -0.02 1.45 16 39 H 0.23 0.31 8.06 -2.91 -0.02 0.29 16 40 H 0.11 -0.32 8.14 -2.38 -0.02 -0.33 16 41 H 0.13 -0.76 8.14 -2.39 -0.02 -0.78 16 42 H 0.10 -0.04 8.14 -2.39 -0.02 -0.06 16 43 H 0.05 1.58 7.76 -2.39 -0.02 1.57 16 44 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.06 1.77 8.06 -2.39 -0.02 1.75 16 47 H 0.01 0.59 7.49 -2.39 -0.02 0.57 16 48 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 49 H 0.37 16.50 5.53 -92.71 -0.51 15.99 16 50 H 0.26 16.09 8.31 -92.70 -0.77 15.32 16 Total: -1.00 -87.98 407.45 3.78 -84.20 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.35 Total: 19.84 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: 7.33 Total: 1.28 kcal Atomic # 7 Polarization: -127.61 SS G_CDS: -5.75 Total: -133.37 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.05 Total: -19.86 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.90 Total: 47.91 kcal Total: -87.98 3.78 -84.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105114566.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.015 kcal (2) G-P(sol) polarization free energy of solvation -87.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds