Wall clock time and date at job start Wed Apr 1 2020 01:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47642 * 2 1 4 4 C 1.53001 * 109.46979 * 120.00089 * 2 1 3 5 5 C 1.53001 * 109.47259 * 64.99683 * 4 2 1 6 6 H 1.09004 * 109.47399 * 305.00322 * 5 4 2 7 7 C 1.53002 * 109.47050 * 65.00034 * 5 4 2 8 8 C 1.50699 * 109.47432 * 184.99921 * 5 4 2 9 9 O 1.21285 * 119.99717 * 0.02562 * 8 5 4 10 10 N 1.34777 * 120.00128 * 179.97438 * 8 5 4 11 11 C 1.47587 * 134.49194 * 180.02562 * 10 8 5 12 12 C 1.53947 * 86.11492 * 155.35831 * 11 10 8 13 13 N 1.46494 * 113.73833 * 137.94973 * 12 11 10 14 14 C 1.35317 * 125.87155 * 275.32706 * 13 12 11 15 15 C 1.35352 * 106.17693 * 180.11507 * 14 13 12 16 16 C 1.50700 * 126.75361 * 179.84844 * 15 14 13 17 17 N 1.46498 * 109.46769 * 94.71485 * 16 15 14 18 18 C 1.36943 * 119.99752 * 179.72432 * 17 16 15 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 16 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 16 21 21 N 1.31611 * 120.00081 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99814 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47483 * 90.00178 * 22 20 18 24 24 H 1.48498 * 109.47011 * 210.00042 * 22 20 18 25 25 H 1.48502 * 109.47495 * 329.99664 * 22 20 18 26 26 N 1.33772 * 106.49634 * 359.59642 * 15 14 13 27 27 N 1.28636 * 108.88627 * 0.25926 * 26 15 14 28 28 C 1.47585 * 134.49454 * 0.02562 * 10 8 5 29 29 H 1.08991 * 109.47454 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47066 * 299.99953 * 1 2 3 31 31 H 1.09001 * 109.46869 * 59.99519 * 1 2 3 32 32 H 1.09000 * 109.47293 * 239.99303 * 2 1 3 33 33 H 1.08993 * 109.47245 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.46661 * 300.00300 * 3 2 1 35 35 H 1.08999 * 109.46852 * 59.99916 * 3 2 1 36 36 H 1.08999 * 109.47269 * 304.99880 * 4 2 1 37 37 H 1.08995 * 109.47157 * 184.99641 * 4 2 1 38 38 H 1.08998 * 109.47021 * 300.00229 * 7 5 4 39 39 H 1.08996 * 109.47067 * 60.00471 * 7 5 4 40 40 H 1.08998 * 109.47053 * 180.02562 * 7 5 4 41 41 H 1.09000 * 113.76791 * 41.06228 * 11 10 8 42 42 H 1.08999 * 113.76608 * 269.66150 * 11 10 8 43 43 H 1.08997 * 113.74241 * 269.15464 * 12 11 10 44 44 H 1.08002 * 126.91295 * 359.96910 * 14 13 12 45 45 H 1.09004 * 109.47210 * 334.71843 * 16 15 14 46 46 H 1.08994 * 109.47121 * 214.71813 * 16 15 14 47 47 H 0.97001 * 120.00384 * 0.02562 * 17 16 15 48 48 H 0.97008 * 120.00329 * 179.97438 * 21 20 18 49 49 H 1.08992 * 113.76674 * 90.33680 * 28 10 8 50 50 H 1.09002 * 113.76315 * 318.94269 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6351 -2.1955 1.1880 6 1 0.5561 -2.2707 1.0527 7 6 2.3447 -2.8708 0.0127 8 6 2.0292 -2.8785 2.4722 9 8 2.5793 -2.2480 3.3503 10 7 1.7694 -4.1896 2.6455 11 6 2.0047 -5.1553 3.7365 12 6 0.8222 -5.9471 3.1495 13 7 1.0433 -7.3948 3.1103 14 6 1.6882 -8.0722 2.1324 15 6 1.6598 -9.3760 2.4951 16 6 2.2445 -10.5370 1.7327 17 7 3.5899 -10.8239 2.2365 18 6 4.3196 -11.8486 1.6953 19 1 3.9049 -12.4423 0.8940 20 6 5.5921 -12.1241 2.1765 21 7 6.2936 -13.1086 1.6561 22 14 6.3089 -11.0977 3.5629 23 1 5.9528 -11.7105 4.8679 24 1 7.7868 -11.0458 3.4274 25 1 5.7572 -9.7206 3.4957 26 7 1.0154 -9.4305 3.6661 27 7 0.6630 -8.2402 4.0033 28 6 1.1355 -5.2363 1.8204 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6053 -0.2618 2.1370 37 1 3.1262 -0.6444 1.2952 38 1 2.0597 -2.3768 -0.9162 39 1 3.4236 -2.7957 0.1480 40 1 2.0560 -3.9209 -0.0312 41 1 1.8125 -4.7508 4.7302 42 1 2.9603 -5.6748 3.6647 43 1 -0.1430 -5.6761 3.5772 44 1 2.1336 -7.6566 1.2406 45 1 2.2992 -10.2855 0.6735 46 1 1.6119 -11.4145 1.8657 47 1 3.9622 -10.2909 2.9564 48 1 7.1830 -13.3010 1.9921 49 1 1.8357 -5.7795 1.1859 50 1 0.2493 -4.8964 1.2844 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105354616.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:31:55 Heat of formation + Delta-G solvation = 105.842908 kcal Electronic energy + Delta-G solvation = -28666.200452 eV Core-core repulsion = 24732.462257 eV Total energy + Delta-G solvation = -3933.738195 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.29603 -41.01348 -38.92581 -37.19509 -35.24424 -33.79859 -33.13525 -31.94540 -30.40286 -29.49504 -27.65784 -27.38135 -26.94855 -26.25025 -24.81752 -23.17030 -22.47875 -21.21745 -20.79774 -20.08316 -19.42893 -18.19917 -17.72847 -17.40027 -16.68103 -16.21966 -15.95383 -15.42578 -15.00452 -14.62960 -14.49293 -14.29414 -14.18696 -14.01311 -13.84557 -13.56181 -13.45218 -13.09275 -12.98039 -12.76401 -12.75224 -12.72605 -12.39934 -12.24541 -11.97665 -11.91683 -11.72381 -11.61781 -11.20742 -11.14797 -11.03871 -10.96495 -10.89440 -10.66335 -10.20928 -10.17687 -10.02520 -9.60734 -9.39947 -9.09963 -8.91800 -7.25585 -5.77334 -3.13325 1.54300 1.78797 2.05515 2.51608 2.68322 3.32901 3.38483 3.43630 3.47259 3.58480 4.02907 4.14701 4.17591 4.34065 4.48036 4.51600 4.57430 4.59984 4.60986 4.67846 4.73889 4.75562 4.97519 5.01807 5.04986 5.10520 5.16861 5.19812 5.22401 5.29923 5.31502 5.40549 5.41977 5.50990 5.51489 5.58800 5.61713 5.63233 5.69862 5.75540 5.88000 5.95771 6.18560 6.50517 6.51776 6.62915 6.99708 7.60775 7.96749 8.41177 8.61477 9.19065 9.91653 10.11219 11.40647 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015242 B = 0.002243 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.563404 B =12477.559096 C =13120.928124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.100 4.100 3 C -0.148 4.148 4 C -0.097 4.097 5 C -0.106 4.106 6 H 0.101 0.899 7 C -0.149 4.149 8 C 0.547 3.453 9 O -0.529 6.529 10 N -0.643 5.643 11 C 0.103 3.897 12 C 0.112 3.888 13 N -0.294 5.294 14 C -0.046 4.046 15 C -0.007 4.007 16 C 0.237 3.763 17 N -0.749 5.749 18 C -0.244 4.244 19 H 0.094 0.906 20 C 0.007 3.993 21 N -0.932 5.932 22 Si 0.884 3.116 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.280 1.280 26 N -0.251 5.251 27 N -0.089 5.089 28 C 0.100 3.900 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.146 0.854 44 H 0.190 0.810 45 H 0.047 0.953 46 H 0.049 0.951 47 H 0.362 0.638 48 H 0.260 0.740 49 H 0.104 0.896 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.757 29.211 -5.482 33.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.118 4.118 3 C -0.205 4.205 4 C -0.134 4.134 5 C -0.127 4.127 6 H 0.119 0.881 7 C -0.207 4.207 8 C 0.338 3.662 9 O -0.404 6.404 10 N -0.381 5.381 11 C -0.021 4.021 12 C 0.008 3.992 13 N -0.089 5.089 14 C -0.196 4.196 15 C -0.144 4.144 16 C 0.108 3.892 17 N -0.396 5.396 18 C -0.374 4.374 19 H 0.111 0.889 20 C -0.189 4.189 21 N -0.580 5.580 22 Si 0.715 3.285 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.206 1.206 26 N -0.118 5.118 27 N -0.067 5.067 28 C -0.025 4.025 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.164 0.836 44 H 0.207 0.793 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.195 0.805 48 H 0.070 0.930 49 H 0.122 0.878 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -15.077 29.422 -3.828 33.281 hybrid contribution 1.214 0.851 0.038 1.483 sum -13.863 30.273 -3.790 33.511 Atomic orbital electron populations 1.21918 0.95253 1.01706 1.01931 1.21198 0.95908 0.96429 0.98252 1.21825 1.01126 0.95744 1.01807 1.21500 1.01901 0.91755 0.98291 1.21361 1.02497 0.96531 0.92300 0.88133 1.21890 1.01137 1.00506 0.97123 1.20486 0.77482 0.79203 0.89078 1.90745 1.41867 1.63325 1.44418 1.49681 1.61479 1.07123 1.19819 1.23601 0.97896 0.86673 0.93921 1.23730 1.02153 0.73936 0.99355 1.47153 1.37965 1.08169 1.15624 1.23366 1.04941 0.92963 0.98283 1.22558 1.01870 0.95286 0.94714 1.18933 0.86406 0.90213 0.93622 1.42654 1.13517 1.39591 1.43810 1.19030 0.96441 1.06644 1.15276 0.88855 1.24632 0.96900 0.98116 0.99210 1.69692 1.12206 1.31494 1.44572 0.86560 0.78368 0.80214 0.83403 1.20932 1.21717 1.20648 1.75144 1.12655 1.11805 1.12237 1.78324 1.20077 0.93923 1.14382 1.23665 0.98867 0.86193 0.93730 0.92602 0.92596 0.92630 0.90747 0.92585 0.92631 0.92628 0.90972 0.91113 0.90766 0.91834 0.92046 0.88059 0.88438 0.83618 0.79292 0.93550 0.93357 0.80504 0.93005 0.87800 0.87691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 8.95 37.16 0.33 -0.32 16 2 C -0.10 -0.49 2.78 -90.62 -0.25 -0.74 16 3 C -0.15 -0.74 9.19 37.16 0.34 -0.40 16 4 C -0.10 -0.64 3.50 -26.73 -0.09 -0.73 16 5 C -0.11 -0.64 2.42 -91.77 -0.22 -0.86 16 6 H 0.10 0.44 6.35 -51.93 -0.33 0.11 16 7 C -0.15 -0.73 8.83 37.16 0.33 -0.41 16 8 C 0.55 5.08 7.38 -10.99 -0.08 5.00 16 9 O -0.53 -7.13 16.65 5.55 0.09 -7.04 16 10 N -0.64 -4.88 3.57 -178.53 -0.64 -5.52 16 11 C 0.10 0.86 8.64 -2.97 -0.03 0.83 16 12 C 0.11 0.81 5.15 -70.14 -0.36 0.45 16 13 N -0.29 -3.41 3.54 -56.30 -0.20 -3.61 16 14 C -0.05 -0.57 10.72 -17.04 -0.18 -0.75 16 15 C -0.01 -0.11 6.61 -82.78 -0.55 -0.66 16 16 C 0.24 4.54 6.82 -5.19 -0.04 4.51 16 17 N -0.75 -17.97 5.40 -61.09 -0.33 -18.30 16 18 C -0.24 -6.87 10.47 -15.06 -0.16 -7.03 16 19 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 20 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 21 N -0.93 -29.19 13.97 55.49 0.78 -28.42 16 22 Si 0.88 22.61 27.74 -169.99 -4.71 17.90 16 23 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 25 H -0.28 -6.80 6.52 56.52 0.37 -6.43 16 26 N -0.25 -4.61 12.41 33.29 0.41 -4.19 16 27 N -0.09 -1.38 13.17 60.35 0.79 -0.59 16 28 C 0.10 0.49 6.24 -2.97 -0.02 0.47 16 29 H 0.05 0.21 6.46 -51.93 -0.34 -0.13 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.33 6.34 -51.93 -0.33 0.00 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.57 7.95 -51.93 -0.41 0.15 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.28 6.46 -51.93 -0.34 -0.06 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.25 6.14 -51.93 -0.32 -0.07 16 41 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.15 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.19 1.66 6.72 -52.49 -0.35 1.31 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.36 8.80 5.52 -40.82 -0.23 8.57 16 48 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 49 H 0.10 0.46 6.13 -51.93 -0.32 0.14 16 50 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 LS Contribution 400.68 15.07 6.04 6.04 Total: -1.00 -36.61 400.68 -6.88 -43.50 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -8.05 Total: 0.75 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -1.07 Total: -0.51 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: 0.82 Total: -60.62 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: 0.09 Total: -7.04 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.71 Total: 17.90 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.61 -6.88 -43.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105354616.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.338 kcal (2) G-P(sol) polarization free energy of solvation -36.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds