Wall clock time and date at job start Wed Apr 1 2020 01:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47642 * 2 1 4 4 C 1.53001 * 109.46979 * 120.00089 * 2 1 3 5 5 C 1.53001 * 109.47259 * 64.99683 * 4 2 1 6 6 H 1.09004 * 109.47399 * 305.00322 * 5 4 2 7 7 C 1.53002 * 109.47050 * 65.00034 * 5 4 2 8 8 C 1.50699 * 109.47432 * 184.99921 * 5 4 2 9 9 O 1.21285 * 119.99717 * 0.02562 * 8 5 4 10 10 N 1.34777 * 120.00128 * 179.97438 * 8 5 4 11 11 C 1.47587 * 134.49194 * 180.02562 * 10 8 5 12 12 C 1.53947 * 86.11492 * 155.35831 * 11 10 8 13 13 N 1.46494 * 113.73833 * 137.94973 * 12 11 10 14 14 C 1.35317 * 125.87155 * 275.32706 * 13 12 11 15 15 C 1.35352 * 106.17693 * 180.11507 * 14 13 12 16 16 C 1.50700 * 126.75361 * 179.84844 * 15 14 13 17 17 N 1.46498 * 109.46769 * 94.71485 * 16 15 14 18 18 C 1.36943 * 119.99752 * 179.72432 * 17 16 15 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 16 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 16 21 21 N 1.31611 * 120.00081 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99814 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47483 * 90.00178 * 22 20 18 24 24 H 1.48498 * 109.47011 * 210.00042 * 22 20 18 25 25 H 1.48502 * 109.47495 * 329.99664 * 22 20 18 26 26 N 1.33772 * 106.49634 * 359.59642 * 15 14 13 27 27 N 1.28636 * 108.88627 * 0.25926 * 26 15 14 28 28 C 1.47585 * 134.49454 * 0.02562 * 10 8 5 29 29 H 1.08991 * 109.47454 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47066 * 299.99953 * 1 2 3 31 31 H 1.09001 * 109.46869 * 59.99519 * 1 2 3 32 32 H 1.09000 * 109.47293 * 239.99303 * 2 1 3 33 33 H 1.08993 * 109.47245 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.46661 * 300.00300 * 3 2 1 35 35 H 1.08999 * 109.46852 * 59.99916 * 3 2 1 36 36 H 1.08999 * 109.47269 * 304.99880 * 4 2 1 37 37 H 1.08995 * 109.47157 * 184.99641 * 4 2 1 38 38 H 1.08998 * 109.47021 * 300.00229 * 7 5 4 39 39 H 1.08996 * 109.47067 * 60.00471 * 7 5 4 40 40 H 1.08998 * 109.47053 * 180.02562 * 7 5 4 41 41 H 1.09000 * 113.76791 * 41.06228 * 11 10 8 42 42 H 1.08999 * 113.76608 * 269.66150 * 11 10 8 43 43 H 1.08997 * 113.74241 * 269.15464 * 12 11 10 44 44 H 1.08002 * 126.91295 * 359.96910 * 14 13 12 45 45 H 1.09004 * 109.47210 * 334.71843 * 16 15 14 46 46 H 1.08994 * 109.47121 * 214.71813 * 16 15 14 47 47 H 0.97001 * 120.00384 * 0.02562 * 17 16 15 48 48 H 0.97008 * 120.00329 * 179.97438 * 21 20 18 49 49 H 1.08992 * 113.76674 * 90.33680 * 28 10 8 50 50 H 1.09002 * 113.76315 * 318.94269 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6351 -2.1955 1.1880 6 1 0.5561 -2.2707 1.0527 7 6 2.3447 -2.8708 0.0127 8 6 2.0292 -2.8785 2.4722 9 8 2.5793 -2.2480 3.3503 10 7 1.7694 -4.1896 2.6455 11 6 2.0047 -5.1553 3.7365 12 6 0.8222 -5.9471 3.1495 13 7 1.0433 -7.3948 3.1103 14 6 1.6882 -8.0722 2.1324 15 6 1.6598 -9.3760 2.4951 16 6 2.2445 -10.5370 1.7327 17 7 3.5899 -10.8239 2.2365 18 6 4.3196 -11.8486 1.6953 19 1 3.9049 -12.4423 0.8940 20 6 5.5921 -12.1241 2.1765 21 7 6.2936 -13.1086 1.6561 22 14 6.3089 -11.0977 3.5629 23 1 5.9528 -11.7105 4.8679 24 1 7.7868 -11.0458 3.4274 25 1 5.7572 -9.7206 3.4957 26 7 1.0154 -9.4305 3.6661 27 7 0.6630 -8.2402 4.0033 28 6 1.1355 -5.2363 1.8204 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6053 -0.2618 2.1370 37 1 3.1262 -0.6444 1.2952 38 1 2.0597 -2.3768 -0.9162 39 1 3.4236 -2.7957 0.1480 40 1 2.0560 -3.9209 -0.0312 41 1 1.8125 -4.7508 4.7302 42 1 2.9603 -5.6748 3.6647 43 1 -0.1430 -5.6761 3.5772 44 1 2.1336 -7.6566 1.2406 45 1 2.2992 -10.2855 0.6735 46 1 1.6119 -11.4145 1.8657 47 1 3.9622 -10.2909 2.9564 48 1 7.1830 -13.3010 1.9921 49 1 1.8357 -5.7795 1.1859 50 1 0.2493 -4.8964 1.2844 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105354616.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:31:54 Heat of formation + Delta-G solvation = 79.945930 kcal Electronic energy + Delta-G solvation = -28667.323429 eV Core-core repulsion = 24732.462257 eV Total energy + Delta-G solvation = -3934.861173 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -44.35986 -41.66782 -39.56944 -37.74395 -36.97511 -34.86581 -33.85054 -33.57276 -31.98682 -30.21800 -28.09520 -27.99571 -27.73183 -27.31564 -25.60141 -24.34981 -23.82784 -22.39405 -21.74470 -20.54158 -20.04980 -19.85520 -18.64239 -18.25024 -17.50568 -17.05232 -16.58564 -16.48068 -16.17447 -16.04052 -15.61106 -15.18779 -14.91991 -14.82090 -14.61478 -14.44254 -14.36206 -14.05071 -13.97519 -13.85195 -13.65394 -13.24681 -13.18131 -13.15294 -12.91823 -12.80095 -12.67864 -12.51178 -12.34731 -12.15726 -12.12951 -11.86113 -11.81419 -11.64176 -11.43114 -11.38792 -11.10789 -11.01502 -10.83907 -10.26975 -10.02410 -9.30500 -8.01958 -5.34679 0.53357 1.04301 1.34125 1.39508 1.39684 1.41792 1.46876 1.83569 2.47194 2.73554 3.01511 3.29168 3.38101 3.54381 3.66549 3.73352 3.83388 3.89777 3.94239 4.05879 4.14119 4.17100 4.22051 4.30601 4.32754 4.36471 4.41381 4.50448 4.59487 4.64671 4.71915 4.80086 4.85881 4.87105 4.91391 4.99766 5.06695 5.11880 5.13056 5.16917 5.19693 5.26519 5.34897 5.49158 5.57602 5.60708 5.77134 6.21748 6.39308 6.94245 7.06790 7.48070 7.82217 8.00887 9.19110 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015242 B = 0.002243 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.563404 B =12477.559096 C =13120.928124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 C -0.150 4.150 4 C -0.094 4.094 5 C -0.097 4.097 6 H 0.127 0.873 7 C -0.147 4.147 8 C 0.542 3.458 9 O -0.582 6.582 10 N -0.641 5.641 11 C 0.093 3.907 12 C 0.110 3.890 13 N -0.277 5.277 14 C -0.013 4.013 15 C -0.040 4.040 16 C 0.238 3.762 17 N -0.753 5.753 18 C -0.227 4.227 19 H 0.070 0.930 20 C -0.058 4.058 21 N -0.979 5.979 22 Si 0.948 3.052 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.258 1.258 26 N -0.295 5.295 27 N -0.106 5.106 28 C 0.108 3.892 29 H 0.067 0.933 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.049 0.951 34 H 0.064 0.936 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.091 0.909 39 H 0.045 0.955 40 H 0.077 0.923 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.167 0.833 44 H 0.234 0.766 45 H 0.073 0.927 46 H 0.034 0.966 47 H 0.362 0.638 48 H 0.258 0.742 49 H 0.119 0.881 50 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.428 31.516 -7.058 36.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.112 4.112 3 C -0.208 4.208 4 C -0.132 4.132 5 C -0.118 4.118 6 H 0.145 0.855 7 C -0.204 4.204 8 C 0.334 3.666 9 O -0.461 6.461 10 N -0.377 5.377 11 C -0.031 4.031 12 C 0.009 3.991 13 N -0.072 5.072 14 C -0.165 4.165 15 C -0.178 4.178 16 C 0.110 3.890 17 N -0.399 5.399 18 C -0.358 4.358 19 H 0.088 0.912 20 C -0.250 4.250 21 N -0.630 5.630 22 Si 0.776 3.224 23 H -0.215 1.215 24 H -0.219 1.219 25 H -0.183 1.183 26 N -0.162 5.162 27 N -0.085 5.085 28 C -0.014 4.014 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.109 0.891 39 H 0.064 0.936 40 H 0.096 0.904 41 H 0.113 0.887 42 H 0.103 0.897 43 H 0.184 0.816 44 H 0.250 0.750 45 H 0.090 0.910 46 H 0.052 0.948 47 H 0.194 0.806 48 H 0.067 0.933 49 H 0.137 0.863 50 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -16.824 31.755 -5.409 36.341 hybrid contribution 1.640 0.195 0.504 1.727 sum -15.184 31.949 -4.906 35.713 Atomic orbital electron populations 1.21919 0.94409 1.02506 1.01905 1.21172 0.96521 0.95986 0.97563 1.21852 1.00828 0.96157 1.01929 1.21445 1.00572 0.92736 0.98469 1.21393 1.04020 0.95458 0.90927 0.85549 1.21915 0.99924 1.01571 0.97035 1.21136 0.76573 0.79431 0.89471 1.90723 1.44409 1.64648 1.46355 1.49686 1.60844 1.06984 1.20150 1.23589 0.97883 0.87254 0.94364 1.24139 1.02460 0.71175 1.01368 1.47436 1.36088 1.09346 1.14300 1.23821 1.02490 0.91407 0.98753 1.22264 1.04051 0.96265 0.95240 1.18956 0.83786 0.91092 0.95135 1.42703 1.15091 1.38465 1.43654 1.19059 0.96371 1.06552 1.13788 0.91222 1.25356 0.97749 0.99747 1.02161 1.69847 1.12667 1.33769 1.46698 0.85524 0.77354 0.79670 0.79843 1.21512 1.21874 1.18316 1.75083 1.14133 1.13520 1.13463 1.78237 1.20991 0.93782 1.15471 1.23961 1.00461 0.84500 0.92515 0.91363 0.93342 0.91991 0.89647 0.93147 0.91722 0.93291 0.92853 0.93103 0.89051 0.93557 0.90408 0.88650 0.89669 0.81587 0.75021 0.90970 0.94782 0.80608 0.93326 0.86320 0.83649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 8.95 71.98 0.64 -0.24 16 2 C -0.09 -0.74 2.78 -10.79 -0.03 -0.77 16 3 C -0.15 -1.35 9.19 71.98 0.66 -0.69 16 4 C -0.09 -1.15 3.50 30.60 0.11 -1.05 16 5 C -0.10 -0.90 2.42 -11.54 -0.03 -0.93 16 6 H 0.13 0.54 6.35 -2.38 -0.02 0.52 16 7 C -0.15 -0.90 8.83 71.98 0.64 -0.27 16 8 C 0.54 9.10 7.38 87.66 0.65 9.75 16 9 O -0.58 -15.82 16.65 -3.05 -0.05 -15.87 16 10 N -0.64 -7.76 3.57 -837.12 -2.99 -10.75 16 11 C 0.09 1.36 8.64 86.48 0.75 2.11 16 12 C 0.11 1.17 5.15 46.75 0.24 1.41 16 13 N -0.28 -5.51 3.54 -332.03 -1.18 -6.68 16 14 C -0.01 -0.28 10.72 83.49 0.89 0.61 16 15 C -0.04 -1.26 6.61 41.60 0.28 -0.98 16 16 C 0.24 8.77 6.82 85.63 0.58 9.36 16 17 N -0.75 -35.27 5.40 -347.18 -1.87 -37.14 16 18 C -0.23 -12.77 10.47 84.03 0.88 -11.89 16 19 H 0.07 4.19 8.06 -2.91 -0.02 4.16 16 20 C -0.06 -3.44 5.50 84.86 0.47 -2.98 16 21 N -0.98 -62.46 13.97 21.65 0.30 -62.16 16 22 Si 0.95 46.75 27.74 68.60 1.90 48.65 16 23 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 24 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 25 H -0.26 -11.64 6.52 99.48 0.65 -10.99 16 26 N -0.30 -10.52 12.41 -48.60 -0.60 -11.12 16 27 N -0.11 -3.13 13.17 37.02 0.49 -2.64 16 28 C 0.11 0.49 6.24 86.48 0.54 1.03 16 29 H 0.07 0.23 6.46 -2.39 -0.02 0.22 16 30 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.09 0.50 6.34 -2.39 -0.02 0.49 16 33 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.05 0.85 7.95 -2.39 -0.02 0.83 16 37 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.09 0.28 6.46 -2.39 -0.02 0.27 16 39 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.08 0.23 6.14 -2.39 -0.01 0.21 16 41 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.17 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.23 2.65 6.72 -2.91 -0.02 2.63 16 45 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 46 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.36 16.93 5.52 -92.71 -0.51 16.42 16 48 H 0.26 15.72 8.31 -92.70 -0.77 14.95 16 49 H 0.12 0.28 6.13 -2.39 -0.01 0.26 16 50 H 0.15 -0.36 8.14 -2.39 -0.02 -0.38 16 Total: -1.00 -83.63 400.68 3.64 -79.99 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 0.37 Total: 13.24 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 7.27 Total: 4.48 kcal Atomic # 7 Polarization: -124.64 SS G_CDS: -5.85 Total: -130.49 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.05 Total: -15.87 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 1.90 Total: 48.65 kcal Total: -83.63 3.64 -79.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105354616.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.935 kcal (2) G-P(sol) polarization free energy of solvation -83.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds