Wall clock time and date at job start Wed Apr 1 2020 00:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 110.65423 * 2 1 4 4 C 1.54592 * 110.83610 * 236.74820 * 2 1 3 5 5 N 1.48111 * 103.42310 * 204.44707 * 4 2 1 6 6 C 1.34775 * 127.03395 * 219.28566 * 5 4 2 7 7 O 1.21599 * 120.00362 * 179.68217 * 6 5 4 8 8 C 1.47528 * 120.00015 * 359.68502 * 6 5 4 9 9 C 1.36596 * 125.77210 * 179.97438 * 8 6 5 10 10 N 1.34810 * 106.84096 * 179.97438 * 9 8 6 11 11 C 1.46502 * 126.59499 * 180.02562 * 10 9 8 12 12 C 1.52993 * 109.47048 * 75.02391 * 11 10 9 13 13 C 1.52997 * 109.47055 * 195.02527 * 11 10 9 14 14 C 1.52999 * 109.47080 * 315.02575 * 11 10 9 15 15 N 1.40211 * 106.80990 * 0.02562 * 10 9 8 16 16 N 1.28764 * 108.36635 * 359.97438 * 15 10 9 17 17 C 1.47481 * 105.93405 * 39.02162 * 5 4 2 18 18 C 1.54007 * 107.08339 * 334.78266 * 17 5 4 19 19 H 1.09006 * 110.32681 * 120.29805 * 18 17 5 20 20 C 1.53002 * 110.32197 * 242.40893 * 18 17 5 21 21 N 1.46498 * 109.47454 * 293.54376 * 20 18 17 22 22 C 1.36938 * 120.00114 * 180.02562 * 21 20 18 23 23 H 1.07996 * 119.99574 * 359.97438 * 22 21 20 24 24 C 1.38807 * 119.99972 * 180.02562 * 22 21 20 25 25 N 1.31618 * 120.00238 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00132 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47176 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47513 * 119.99521 * 26 24 22 29 29 H 1.48500 * 109.47393 * 239.99535 * 26 24 22 30 30 H 1.08994 * 109.47423 * 296.81360 * 1 2 3 31 31 H 1.09006 * 109.47290 * 56.81227 * 1 2 3 32 32 H 1.09003 * 109.47148 * 176.80744 * 1 2 3 33 33 H 1.09003 * 110.61620 * 85.92999 * 4 2 1 34 34 H 1.08999 * 110.54425 * 322.92861 * 4 2 1 35 35 H 1.08001 * 126.57514 * 359.97438 * 9 8 6 36 36 H 1.09005 * 109.47308 * 60.00359 * 12 11 10 37 37 H 1.09004 * 109.47248 * 179.97438 * 12 11 10 38 38 H 1.08996 * 109.47671 * 299.99990 * 12 11 10 39 39 H 1.09007 * 109.47257 * 60.00207 * 13 11 10 40 40 H 1.08995 * 109.47286 * 179.97438 * 13 11 10 41 41 H 1.09000 * 109.47159 * 300.00328 * 13 11 10 42 42 H 1.09000 * 109.47269 * 59.99663 * 14 11 10 43 43 H 1.08995 * 109.47120 * 180.02562 * 14 11 10 44 44 H 1.09009 * 109.47096 * 300.00304 * 14 11 10 45 45 H 1.09003 * 109.91466 * 94.14088 * 17 5 4 46 46 H 1.08997 * 109.91956 * 215.22739 * 17 5 4 47 47 H 1.09000 * 109.47288 * 53.55065 * 20 18 17 48 48 H 1.09007 * 109.46741 * 173.54432 * 20 18 17 49 49 H 0.97004 * 120.00023 * 0.02562 * 21 20 18 50 50 H 0.97002 * 120.00540 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0200 0.0000 4 6 2.0799 -0.7922 -1.2083 5 7 3.4279 -1.2112 -0.7600 6 6 4.5538 -1.2498 -1.4997 7 8 5.5998 -1.6121 -0.9966 8 6 4.5172 -0.8523 -2.9200 9 6 5.5825 -0.8457 -3.7750 10 7 5.1226 -0.4203 -4.9687 11 6 5.9044 -0.2517 -6.1961 12 6 6.2007 -1.6238 -6.8046 13 6 5.1081 0.5886 -7.1965 14 6 7.2207 0.4563 -5.8691 15 7 3.7521 -0.1704 -4.8096 16 7 3.4301 -0.4356 -3.5914 17 6 3.2875 -1.5715 0.6633 18 6 2.0774 -0.7914 1.2101 19 1 1.3216 -1.4805 1.5872 20 6 2.5199 0.1682 2.3167 21 7 2.9885 -0.6013 3.4719 22 6 3.4366 0.0482 4.5911 23 1 3.4450 1.1277 4.6219 24 6 3.8811 -0.6809 5.6854 25 7 3.8714 -1.9965 5.6476 26 14 4.4931 0.2050 7.2118 27 1 4.4030 1.6723 7.0021 28 1 3.6573 -0.1811 8.3769 29 1 5.9061 -0.1718 7.4698 30 1 -0.3634 0.4635 0.9171 31 1 -0.3634 0.5625 -0.8601 32 1 -0.3633 -1.0261 -0.0572 33 1 2.1487 -0.1520 -2.0878 34 1 1.4548 -1.6616 -1.4121 35 1 6.5983 -1.1272 -3.5397 36 1 5.2629 -2.1282 -7.0376 37 1 6.7820 -1.4983 -7.7181 38 1 6.7680 -2.2224 -6.0920 39 1 4.8970 1.5663 -6.7630 40 1 5.6899 0.7145 -8.1095 41 1 4.1703 0.0843 -7.4294 42 1 7.7879 -0.1423 -5.1564 43 1 7.8021 0.5822 -6.7824 44 1 7.0095 1.4339 -5.4356 45 1 3.1125 -2.6431 0.7595 46 1 4.1895 -1.2925 1.2077 47 1 3.3285 0.7995 1.9484 48 1 1.6776 0.7931 2.6139 49 1 2.9813 -1.5709 3.4440 50 1 4.1817 -2.5061 6.4125 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106222164.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:58:39 Heat of formation + Delta-G solvation = 72.872348 kcal Electronic energy + Delta-G solvation = -29303.229856 eV Core-core repulsion = 25368.061950 eV Total energy + Delta-G solvation = -3935.167906 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.47566 -39.75994 -37.91957 -37.55597 -34.55317 -32.83883 -32.20834 -31.36621 -30.97596 -28.90878 -28.12861 -28.05349 -26.25976 -25.65115 -23.98944 -23.55688 -22.54945 -21.06678 -20.68420 -19.72970 -19.15322 -17.51027 -17.04306 -16.38938 -16.34795 -16.00711 -15.34474 -14.90227 -14.78948 -14.67349 -14.50022 -14.12355 -13.77548 -13.46167 -13.30772 -13.17013 -13.05975 -12.87356 -12.85316 -12.67784 -12.48960 -12.43568 -12.34687 -12.01893 -11.90836 -11.78608 -11.56696 -11.31167 -11.19152 -10.94337 -10.80203 -10.57651 -10.46297 -10.28674 -10.17827 -9.93101 -9.87971 -9.57931 -9.44273 -8.81487 -8.42125 -6.84778 -5.69455 -2.97857 0.96702 1.64603 1.69943 3.07022 3.36511 3.48615 3.53960 3.56352 3.74980 4.01826 4.04155 4.13984 4.43339 4.64128 4.70027 4.79779 4.81075 4.83308 4.93898 4.98549 5.00464 5.04494 5.08642 5.13690 5.17680 5.36216 5.43757 5.49593 5.55589 5.60309 5.64845 5.66571 5.70206 5.84271 5.91579 6.08674 6.12258 6.18767 6.21511 6.27442 6.34769 6.44672 6.54552 6.60567 6.82085 6.97706 7.67417 7.77385 7.80269 8.28229 8.49313 9.60526 10.18264 10.53060 11.53537 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017672 B = 0.002396 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.090836 B =11681.518583 C =12601.337206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.101 4.101 3 H 0.082 0.918 4 C 0.097 3.903 5 N -0.603 5.603 6 C 0.615 3.385 7 O -0.538 6.538 8 C -0.090 4.090 9 C 0.092 3.908 10 N -0.351 5.351 11 C 0.170 3.830 12 C -0.161 4.161 13 C -0.148 4.148 14 C -0.164 4.164 15 N -0.067 5.067 16 N -0.206 5.206 17 C 0.113 3.887 18 C -0.103 4.103 19 H 0.087 0.913 20 C 0.163 3.837 21 N -0.733 5.733 22 C -0.236 4.236 23 H 0.070 0.930 24 C -0.015 4.015 25 N -0.933 5.933 26 Si 0.906 3.094 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.201 0.799 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.070 0.930 45 H 0.066 0.934 46 H 0.092 0.908 47 H 0.019 0.981 48 H 0.022 0.978 49 H 0.384 0.616 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.521 2.993 -30.493 30.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.120 4.120 3 H 0.100 0.900 4 C -0.026 4.026 5 N -0.334 5.334 6 C 0.401 3.599 7 O -0.415 6.415 8 C -0.229 4.229 9 C -0.065 4.065 10 N -0.138 5.138 11 C 0.087 3.913 12 C -0.219 4.219 13 C -0.206 4.206 14 C -0.222 4.222 15 N -0.047 5.047 16 N -0.079 5.079 17 C -0.009 4.009 18 C -0.122 4.122 19 H 0.105 0.895 20 C 0.035 3.965 21 N -0.377 5.377 22 C -0.368 4.368 23 H 0.088 0.912 24 C -0.211 4.211 25 N -0.582 5.582 26 Si 0.737 3.263 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.123 0.877 34 H 0.088 0.912 35 H 0.218 0.782 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.110 0.890 47 H 0.037 0.963 48 H 0.040 0.960 49 H 0.218 0.782 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.953 3.394 -30.890 31.091 hybrid contribution 1.329 -0.260 1.341 1.906 sum 2.282 3.134 -29.549 29.802 Atomic orbital electron populations 1.21712 0.93950 1.01939 1.01972 1.22234 0.96008 0.99712 0.94086 0.89966 1.22895 0.82116 0.99097 0.98496 1.48518 1.08278 1.64559 1.12093 1.16327 0.82703 0.78088 0.82739 1.90841 1.29703 1.49097 1.71855 1.21434 0.90132 1.14212 0.97118 1.23221 1.01372 0.97102 0.84795 1.50791 1.09160 1.44516 1.09307 1.21091 0.90952 0.97942 0.81298 1.22290 1.03320 0.94376 1.01959 1.21991 1.00779 1.00131 0.97694 1.22311 0.94651 1.01391 1.03852 1.81938 0.89605 1.21703 1.11405 1.74609 1.24456 1.09405 0.99420 1.22219 1.00436 0.98865 0.79374 1.22395 0.96537 0.97963 0.95319 0.89512 1.20705 0.96113 0.92849 0.86833 1.42384 1.76990 1.05732 1.12577 1.19258 1.34221 0.91239 0.92059 0.91206 1.24732 1.02370 0.95477 0.98491 1.69667 1.53515 1.04157 1.30819 0.86126 0.78184 0.78573 0.83374 1.20614 1.21934 1.21908 0.91929 0.92644 0.92493 0.87677 0.91205 0.78240 0.91218 0.89633 0.91299 0.91190 0.90153 0.90621 0.91035 0.89385 0.91062 0.91615 0.89006 0.96286 0.96014 0.78246 0.93609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.16 37.16 0.34 -1.22 16 2 C -0.10 -1.36 3.19 -88.94 -0.28 -1.65 16 3 H 0.08 1.16 7.86 -51.93 -0.41 0.75 16 4 C 0.10 1.30 6.11 -2.32 -0.01 1.29 16 5 N -0.60 -9.80 3.29 -171.21 -0.56 -10.36 16 6 C 0.62 10.37 7.89 -12.47 -0.10 10.28 16 7 O -0.54 -10.65 17.20 5.28 0.09 -10.56 16 8 C -0.09 -1.24 6.86 -83.55 -0.57 -1.81 16 9 C 0.09 0.97 10.43 -16.84 -0.18 0.79 16 10 N -0.35 -3.24 3.44 -48.36 -0.17 -3.40 16 11 C 0.17 0.93 1.25 -131.82 -0.16 0.76 16 12 C -0.16 -0.67 8.74 37.15 0.32 -0.35 16 13 C -0.15 -0.71 8.11 37.16 0.30 -0.41 16 14 C -0.16 -0.65 8.30 37.16 0.31 -0.34 16 15 N -0.07 -0.80 12.91 60.35 0.78 -0.02 16 16 N -0.21 -2.77 9.29 32.85 0.30 -2.46 16 17 C 0.11 2.01 6.31 -2.98 -0.02 2.00 16 18 C -0.10 -1.71 2.65 -89.25 -0.24 -1.95 16 19 H 0.09 1.43 7.85 -51.93 -0.41 1.02 16 20 C 0.16 3.37 5.34 -4.04 -0.02 3.35 16 21 N -0.73 -19.00 5.33 -59.91 -0.32 -19.32 16 22 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 23 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 24 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 25 N -0.93 -28.89 13.06 55.49 0.72 -28.16 16 26 Si 0.91 23.04 29.55 -169.99 -5.02 18.02 16 27 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 29 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 33 H 0.11 1.39 5.41 -51.93 -0.28 1.11 16 34 H 0.07 0.87 8.01 -51.93 -0.42 0.45 16 35 H 0.20 1.61 7.63 -52.49 -0.40 1.21 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 41 H 0.07 0.44 8.06 -51.93 -0.42 0.02 16 42 H 0.07 0.27 7.44 -51.93 -0.39 -0.12 16 43 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 44 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 45 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.09 1.96 7.49 -51.93 -0.39 1.57 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.38 10.40 7.51 -40.82 -0.31 10.10 16 50 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 404.43 15.07 6.09 6.09 Total: -1.00 -35.16 404.43 -7.09 -42.25 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -8.45 Total: 4.67 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -0.56 Total: 3.25 kcal Atomic # 7 Polarization: -64.49 SS G_CDS: 0.76 Total: -63.73 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.16 -7.09 -42.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106222164.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.127 kcal (2) G-P(sol) polarization free energy of solvation -35.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds