Wall clock time and date at job start Wed Apr 1 2020 00:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 110.65423 * 2 1 4 4 C 1.54592 * 110.83610 * 236.74820 * 2 1 3 5 5 N 1.48111 * 103.42310 * 204.44707 * 4 2 1 6 6 C 1.34775 * 127.03395 * 219.28566 * 5 4 2 7 7 O 1.21599 * 120.00362 * 179.68217 * 6 5 4 8 8 C 1.47528 * 120.00015 * 359.68502 * 6 5 4 9 9 C 1.36596 * 125.77210 * 179.97438 * 8 6 5 10 10 N 1.34810 * 106.84096 * 179.97438 * 9 8 6 11 11 C 1.46502 * 126.59499 * 180.02562 * 10 9 8 12 12 C 1.52993 * 109.47048 * 75.02391 * 11 10 9 13 13 C 1.52997 * 109.47055 * 195.02527 * 11 10 9 14 14 C 1.52999 * 109.47080 * 315.02575 * 11 10 9 15 15 N 1.40211 * 106.80990 * 0.02562 * 10 9 8 16 16 N 1.28764 * 108.36635 * 359.97438 * 15 10 9 17 17 C 1.47481 * 105.93405 * 39.02162 * 5 4 2 18 18 C 1.54007 * 107.08339 * 334.78266 * 17 5 4 19 19 H 1.09006 * 110.32681 * 120.29805 * 18 17 5 20 20 C 1.53002 * 110.32197 * 242.40893 * 18 17 5 21 21 N 1.46498 * 109.47454 * 293.54376 * 20 18 17 22 22 C 1.36938 * 120.00114 * 180.02562 * 21 20 18 23 23 H 1.07996 * 119.99574 * 359.97438 * 22 21 20 24 24 C 1.38807 * 119.99972 * 180.02562 * 22 21 20 25 25 N 1.31618 * 120.00238 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00132 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47176 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47513 * 119.99521 * 26 24 22 29 29 H 1.48500 * 109.47393 * 239.99535 * 26 24 22 30 30 H 1.08994 * 109.47423 * 296.81360 * 1 2 3 31 31 H 1.09006 * 109.47290 * 56.81227 * 1 2 3 32 32 H 1.09003 * 109.47148 * 176.80744 * 1 2 3 33 33 H 1.09003 * 110.61620 * 85.92999 * 4 2 1 34 34 H 1.08999 * 110.54425 * 322.92861 * 4 2 1 35 35 H 1.08001 * 126.57514 * 359.97438 * 9 8 6 36 36 H 1.09005 * 109.47308 * 60.00359 * 12 11 10 37 37 H 1.09004 * 109.47248 * 179.97438 * 12 11 10 38 38 H 1.08996 * 109.47671 * 299.99990 * 12 11 10 39 39 H 1.09007 * 109.47257 * 60.00207 * 13 11 10 40 40 H 1.08995 * 109.47286 * 179.97438 * 13 11 10 41 41 H 1.09000 * 109.47159 * 300.00328 * 13 11 10 42 42 H 1.09000 * 109.47269 * 59.99663 * 14 11 10 43 43 H 1.08995 * 109.47120 * 180.02562 * 14 11 10 44 44 H 1.09009 * 109.47096 * 300.00304 * 14 11 10 45 45 H 1.09003 * 109.91466 * 94.14088 * 17 5 4 46 46 H 1.08997 * 109.91956 * 215.22739 * 17 5 4 47 47 H 1.09000 * 109.47288 * 53.55065 * 20 18 17 48 48 H 1.09007 * 109.46741 * 173.54432 * 20 18 17 49 49 H 0.97004 * 120.00023 * 0.02562 * 21 20 18 50 50 H 0.97002 * 120.00540 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0200 0.0000 4 6 2.0799 -0.7922 -1.2083 5 7 3.4279 -1.2112 -0.7600 6 6 4.5538 -1.2498 -1.4997 7 8 5.5998 -1.6121 -0.9966 8 6 4.5172 -0.8523 -2.9200 9 6 5.5825 -0.8457 -3.7750 10 7 5.1226 -0.4203 -4.9687 11 6 5.9044 -0.2517 -6.1961 12 6 6.2007 -1.6238 -6.8046 13 6 5.1081 0.5886 -7.1965 14 6 7.2207 0.4563 -5.8691 15 7 3.7521 -0.1704 -4.8096 16 7 3.4301 -0.4356 -3.5914 17 6 3.2875 -1.5715 0.6633 18 6 2.0774 -0.7914 1.2101 19 1 1.3216 -1.4805 1.5872 20 6 2.5199 0.1682 2.3167 21 7 2.9885 -0.6013 3.4719 22 6 3.4366 0.0482 4.5911 23 1 3.4450 1.1277 4.6219 24 6 3.8811 -0.6809 5.6854 25 7 3.8714 -1.9965 5.6476 26 14 4.4931 0.2050 7.2118 27 1 4.4030 1.6723 7.0021 28 1 3.6573 -0.1811 8.3769 29 1 5.9061 -0.1718 7.4698 30 1 -0.3634 0.4635 0.9171 31 1 -0.3634 0.5625 -0.8601 32 1 -0.3633 -1.0261 -0.0572 33 1 2.1487 -0.1520 -2.0878 34 1 1.4548 -1.6616 -1.4121 35 1 6.5983 -1.1272 -3.5397 36 1 5.2629 -2.1282 -7.0376 37 1 6.7820 -1.4983 -7.7181 38 1 6.7680 -2.2224 -6.0920 39 1 4.8970 1.5663 -6.7630 40 1 5.6899 0.7145 -8.1095 41 1 4.1703 0.0843 -7.4294 42 1 7.7879 -0.1423 -5.1564 43 1 7.8021 0.5822 -6.7824 44 1 7.0095 1.4339 -5.4356 45 1 3.1125 -2.6431 0.7595 46 1 4.1895 -1.2925 1.2077 47 1 3.3285 0.7995 1.9484 48 1 1.6776 0.7931 2.6139 49 1 2.9813 -1.5709 3.4440 50 1 4.1817 -2.5061 6.4125 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106222164.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:58:38 Heat of formation + Delta-G solvation = 49.323085 kcal Electronic energy + Delta-G solvation = -29304.251029 eV Core-core repulsion = 25368.061950 eV Total energy + Delta-G solvation = -3936.189079 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.36835 -41.05096 -39.09625 -38.30393 -36.45073 -34.25256 -33.09074 -33.02299 -32.05847 -30.49372 -28.50851 -28.42469 -27.44916 -27.16594 -25.32428 -24.76146 -23.90979 -22.35890 -21.59346 -21.01274 -20.27009 -19.17284 -18.23869 -17.57584 -17.33727 -17.02449 -16.68490 -16.50089 -15.76392 -15.67665 -15.37113 -15.17625 -15.17050 -14.96060 -14.87572 -14.19687 -14.00191 -13.71170 -13.63676 -13.50627 -13.39122 -13.26094 -13.18243 -13.08778 -12.84795 -12.80706 -12.77512 -12.53587 -12.46064 -12.31772 -12.09166 -11.99328 -11.94601 -11.75816 -11.47360 -11.31963 -11.28843 -11.21350 -10.95859 -10.43225 -9.74214 -9.00407 -7.95071 -5.24086 0.10596 0.56669 0.99392 1.46040 1.47715 1.57589 1.84774 2.15008 2.55533 3.04305 3.21064 3.37978 3.50704 3.57694 3.64265 3.73585 3.76351 3.79211 3.89733 4.14781 4.20239 4.25708 4.37391 4.45645 4.56328 4.56685 4.59207 4.63418 4.66919 4.69439 4.75387 4.79032 4.79820 4.81919 4.91609 4.95706 5.05096 5.07097 5.18560 5.19462 5.22323 5.26517 5.28623 5.37369 5.48385 5.52219 5.57306 6.27107 6.42673 6.78262 7.03448 7.33341 8.08217 8.32367 9.28680 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017672 B = 0.002396 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.090836 B =11681.518583 C =12601.337206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.090 4.090 3 H 0.077 0.923 4 C 0.103 3.897 5 N -0.606 5.606 6 C 0.610 3.390 7 O -0.579 6.579 8 C -0.116 4.116 9 C 0.107 3.893 10 N -0.336 5.336 11 C 0.159 3.841 12 C -0.158 4.158 13 C -0.147 4.147 14 C -0.162 4.162 15 N -0.077 5.077 16 N -0.218 5.218 17 C 0.118 3.882 18 C -0.091 4.091 19 H 0.094 0.906 20 C 0.165 3.835 21 N -0.744 5.744 22 C -0.245 4.245 23 H 0.074 0.926 24 C -0.076 4.076 25 N -0.968 5.968 26 Si 0.974 3.026 27 H -0.267 1.267 28 H -0.290 1.290 29 H -0.294 1.294 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.112 0.888 34 H 0.086 0.914 35 H 0.224 0.776 36 H 0.057 0.943 37 H 0.114 0.886 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.110 0.890 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.116 0.884 44 H 0.059 0.941 45 H 0.067 0.933 46 H 0.049 0.951 47 H 0.007 0.993 48 H 0.031 0.969 49 H 0.375 0.625 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.464 4.020 -32.830 33.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.110 4.110 3 H 0.096 0.904 4 C -0.019 4.019 5 N -0.337 5.337 6 C 0.399 3.601 7 O -0.459 6.459 8 C -0.255 4.255 9 C -0.052 4.052 10 N -0.122 5.122 11 C 0.078 3.922 12 C -0.216 4.216 13 C -0.204 4.204 14 C -0.220 4.220 15 N -0.056 5.056 16 N -0.091 5.091 17 C -0.005 4.005 18 C -0.111 4.111 19 H 0.112 0.888 20 C 0.038 3.962 21 N -0.387 5.387 22 C -0.377 4.377 23 H 0.092 0.908 24 C -0.269 4.269 25 N -0.619 5.619 26 Si 0.803 3.197 27 H -0.191 1.191 28 H -0.217 1.217 29 H -0.222 1.222 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.130 0.870 34 H 0.104 0.896 35 H 0.240 0.760 36 H 0.076 0.924 37 H 0.132 0.868 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.129 0.871 41 H 0.082 0.918 42 H 0.093 0.907 43 H 0.134 0.866 44 H 0.078 0.922 45 H 0.085 0.915 46 H 0.068 0.932 47 H 0.025 0.975 48 H 0.049 0.951 49 H 0.207 0.793 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.855 4.470 -33.292 33.602 hybrid contribution 1.403 -0.542 1.908 2.430 sum 2.258 3.929 -31.384 31.709 Atomic orbital electron populations 1.21693 0.91550 1.02996 1.02797 1.22210 0.97833 0.98814 0.92161 0.90433 1.23022 0.80677 0.99770 0.98444 1.48627 1.09440 1.64334 1.11305 1.16776 0.82145 0.77305 0.83910 1.90801 1.31057 1.51034 1.73012 1.21137 0.91653 1.16716 0.95994 1.23520 1.01583 0.95508 0.84550 1.51160 1.08408 1.42649 1.10005 1.21612 0.91284 0.99305 0.79974 1.22315 1.03133 0.93098 1.03081 1.22022 1.00739 0.99045 0.98601 1.22358 0.93859 1.00493 1.05324 1.81855 0.91193 1.21856 1.10726 1.74548 1.24753 1.09915 0.99908 1.22001 0.99036 0.99080 0.80392 1.22271 0.96092 0.97501 0.95210 0.88822 1.20803 0.95612 0.93279 0.86463 1.42578 1.77078 1.05596 1.13414 1.19648 1.33439 0.91619 0.92949 0.90842 1.25584 1.03299 0.96284 1.01700 1.69823 1.54911 1.05618 1.31574 0.85063 0.77089 0.78124 0.79421 1.19106 1.21659 1.22175 0.92270 0.90497 0.91522 0.86995 0.89602 0.75986 0.92428 0.86752 0.91333 0.92371 0.87136 0.91779 0.90735 0.86583 0.92173 0.91521 0.93204 0.97528 0.95109 0.79320 0.93976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.16 71.98 0.66 -2.02 16 2 C -0.09 -2.35 3.19 -9.70 -0.03 -2.39 16 3 H 0.08 2.12 7.86 -2.38 -0.02 2.10 16 4 C 0.10 2.67 6.11 86.61 0.53 3.20 16 5 N -0.61 -20.14 3.29 -813.85 -2.68 -22.82 16 6 C 0.61 21.22 7.89 86.69 0.68 21.90 16 7 O -0.58 -23.97 17.20 -4.03 -0.07 -24.04 16 8 C -0.12 -3.19 6.86 40.82 0.28 -2.91 16 9 C 0.11 2.16 10.43 83.85 0.87 3.04 16 10 N -0.34 -5.75 3.44 -306.91 -1.06 -6.81 16 11 C 0.16 1.38 1.25 3.60 0.00 1.38 16 12 C -0.16 -0.90 8.74 71.98 0.63 -0.27 16 13 C -0.15 -1.09 8.11 71.98 0.58 -0.50 16 14 C -0.16 -0.85 8.30 71.98 0.60 -0.25 16 15 N -0.08 -1.76 12.91 37.02 0.48 -1.29 16 16 N -0.22 -5.76 9.29 -49.99 -0.46 -6.22 16 17 C 0.12 4.38 6.31 86.53 0.55 4.92 16 18 C -0.09 -3.07 2.65 -9.90 -0.03 -3.09 16 19 H 0.09 3.05 7.85 -2.38 -0.02 3.03 16 20 C 0.16 6.96 5.34 86.38 0.46 7.42 16 21 N -0.74 -39.60 5.33 -343.45 -1.83 -41.43 16 22 C -0.24 -14.29 9.99 84.03 0.84 -13.45 16 23 H 0.07 4.14 7.83 -2.91 -0.02 4.12 16 24 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 25 N -0.97 -61.31 13.06 21.65 0.28 -61.03 16 26 Si 0.97 47.86 29.55 68.60 2.03 49.89 16 27 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 28 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 29 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 30 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.07 1.24 8.10 -2.39 -0.02 1.22 16 33 H 0.11 2.85 5.41 -2.39 -0.01 2.83 16 34 H 0.09 1.99 8.01 -2.39 -0.02 1.97 16 35 H 0.22 3.32 7.63 -2.91 -0.02 3.30 16 36 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 37 H 0.11 0.02 8.14 -2.38 -0.02 0.00 16 38 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 40 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 41 H 0.06 0.64 8.06 -2.39 -0.02 0.62 16 42 H 0.07 0.37 7.44 -2.39 -0.02 0.35 16 43 H 0.12 -0.01 8.14 -2.39 -0.02 -0.03 16 44 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 45 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 46 H 0.05 2.27 7.49 -2.39 -0.02 2.25 16 47 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 48 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 49 H 0.37 21.06 7.51 -92.71 -0.70 20.36 16 50 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -78.46 404.43 4.02 -74.44 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: 0.23 Total: 26.41 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 7.10 Total: 12.89 kcal Atomic # 7 Polarization: -134.32 SS G_CDS: -5.27 Total: -139.59 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.07 Total: -24.04 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 2.03 Total: 49.89 kcal Total: -78.46 4.02 -74.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106222164.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.764 kcal (2) G-P(sol) polarization free energy of solvation -78.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds