Wall clock time and date at job start Wed Apr 1 2020 01:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.65937 * 2 1 4 4 C 1.54601 * 110.98865 * 236.84098 * 2 1 3 5 5 N 1.48118 * 103.41972 * 204.37430 * 4 2 1 6 6 C 1.34780 * 127.03068 * 219.28697 * 5 4 2 7 7 O 1.21279 * 120.00136 * 179.68690 * 6 5 4 8 8 C 1.50700 * 119.99830 * 359.68256 * 6 5 4 9 9 C 1.53000 * 109.46808 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47052 * 180.02562 * 9 8 6 11 11 C 1.53003 * 109.47392 * 180.02562 * 10 9 8 12 12 C 1.50690 * 109.47160 * 179.97438 * 11 10 9 13 13 C 1.35351 * 126.91729 * 274.95578 * 12 11 10 14 14 N 1.33769 * 106.50107 * 180.02562 * 13 12 11 15 15 N 1.28629 * 108.88659 * 359.97438 * 14 13 12 16 16 N 1.28714 * 110.17964 * 0.02562 * 15 14 13 17 17 H 0.97001 * 125.86941 * 179.73092 * 16 15 14 18 18 C 1.47480 * 105.93518 * 39.02397 * 5 4 2 19 19 C 1.53999 * 107.08446 * 334.77875 * 18 5 4 20 20 H 1.08998 * 110.32678 * 120.19777 * 19 18 5 21 21 C 1.53003 * 110.32622 * 242.30998 * 19 18 5 22 22 N 1.46498 * 109.46867 * 293.54363 * 21 19 18 23 23 C 1.36941 * 119.99723 * 179.97438 * 22 21 19 24 24 H 1.08004 * 119.99985 * 0.02562 * 23 22 21 25 25 C 1.38812 * 120.00177 * 180.02562 * 23 22 21 26 26 N 1.31616 * 120.00268 * 180.02562 * 25 23 22 27 27 Si 1.86798 * 119.99631 * 359.97438 * 25 23 22 28 28 H 1.48507 * 109.47184 * 90.00588 * 27 25 23 29 29 H 1.48507 * 109.47063 * 210.00037 * 27 25 23 30 30 H 1.48495 * 109.47805 * 330.00340 * 27 25 23 31 31 H 1.09002 * 109.47266 * 296.81077 * 1 2 3 32 32 H 1.09001 * 109.46764 * 56.81332 * 1 2 3 33 33 H 1.09000 * 109.47083 * 176.81077 * 1 2 3 34 34 H 1.08996 * 110.61718 * 85.86078 * 4 2 1 35 35 H 1.09002 * 110.54737 * 322.85361 * 4 2 1 36 36 H 1.09003 * 109.46953 * 60.00575 * 8 6 5 37 37 H 1.08997 * 109.47733 * 300.00178 * 8 6 5 38 38 H 1.09000 * 109.47594 * 60.00256 * 9 8 6 39 39 H 1.09002 * 109.47793 * 299.99988 * 9 8 6 40 40 H 1.09004 * 109.47449 * 60.00315 * 10 9 8 41 41 H 1.08997 * 109.47509 * 300.00168 * 10 9 8 42 42 H 1.08996 * 109.46925 * 59.99575 * 11 10 9 43 43 H 1.09004 * 109.46804 * 300.00073 * 11 10 9 44 44 H 1.08004 * 126.74797 * 0.05551 * 13 12 11 45 45 H 1.09002 * 109.91286 * 94.14211 * 18 5 4 46 46 H 1.09003 * 109.91522 * 215.22472 * 18 5 4 47 47 H 1.08998 * 109.46823 * 53.54648 * 21 19 18 48 48 H 1.09001 * 109.46846 * 173.54594 * 21 19 18 49 49 H 0.96993 * 120.00648 * 0.02562 * 22 21 19 50 50 H 0.96996 * 120.00359 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0838 -0.7895 -1.2084 5 7 3.4321 -1.2057 -0.7583 6 6 4.5594 -1.2406 -1.4964 7 8 5.6027 -1.6000 -0.9933 8 6 4.5232 -0.8330 -2.9468 9 6 5.9239 -0.9640 -3.5483 10 6 5.8874 -0.5496 -5.0207 11 6 7.2879 -0.6812 -5.6225 12 6 7.2518 -0.2736 -7.0728 13 6 6.9244 -1.0544 -8.1288 14 7 7.0277 -0.2839 -9.2174 15 7 7.3941 0.8959 -8.8593 16 7 7.5403 0.9467 -7.5815 17 1 7.8142 1.7249 -7.0713 18 6 3.2903 -1.5680 0.6642 19 6 2.0776 -0.7916 1.2101 20 1 1.3222 -1.4829 1.5835 21 6 2.5154 0.1660 2.3202 22 7 2.9826 -0.6057 3.4745 23 6 3.4277 0.0418 4.5961 24 1 3.4339 1.1213 4.6298 25 6 3.8708 -0.6893 5.6897 26 7 4.2981 -0.0671 6.7679 27 14 3.8593 -2.5564 5.6317 28 1 5.1558 -3.0430 5.0953 29 1 3.6577 -3.0930 7.0016 30 1 2.7553 -3.0176 4.7520 31 1 -0.3634 0.4635 0.9172 32 1 -0.3633 0.5625 -0.8601 33 1 -0.3633 -1.0261 -0.0572 34 1 2.1525 -0.1481 -2.0870 35 1 1.4612 -1.6602 -1.4142 36 1 4.1891 0.2016 -3.0252 37 1 3.8334 -1.4797 -3.4889 38 1 6.2577 -1.9986 -3.4699 39 1 6.6141 -0.3175 -3.0063 40 1 5.5538 0.4853 -5.0988 41 1 5.1972 -1.1957 -5.5631 42 1 7.6211 -1.7160 -5.5444 43 1 7.9785 -0.0352 -5.0802 44 1 6.6361 -2.0948 -8.0984 45 1 3.1179 -2.6402 0.7589 46 1 4.1909 -1.2874 1.2104 47 1 3.3238 0.7996 1.9555 48 1 1.6713 0.7886 2.6168 49 1 2.9773 -1.5751 3.4442 50 1 4.6081 -0.5779 7.5320 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106477702.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:00:20 Heat of formation + Delta-G solvation = 51.297626 kcal Electronic energy + Delta-G solvation = -28037.593951 eV Core-core repulsion = 24101.490495 eV Total energy + Delta-G solvation = -3936.103456 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 4.04 seconds Orbital eigenvalues (eV) -43.73685 -40.24037 -38.23102 -36.30830 -34.85242 -33.80915 -33.02509 -32.69682 -31.58488 -30.02411 -29.12588 -26.61594 -26.20828 -24.83452 -23.41520 -23.03324 -22.24841 -21.57482 -21.08827 -19.99681 -19.26315 -18.62450 -17.71519 -16.95653 -16.53344 -16.44646 -16.04440 -15.40096 -14.98906 -14.88049 -14.65152 -14.42590 -14.25723 -13.93750 -13.47981 -13.22116 -13.19105 -12.97520 -12.75411 -12.64764 -12.43085 -12.13893 -12.10217 -11.94233 -11.75134 -11.61793 -11.59641 -11.47725 -11.28058 -11.05323 -10.99412 -10.99192 -10.72059 -10.59884 -10.33397 -10.11983 -9.86624 -9.59891 -9.58500 -8.91846 -8.69176 -7.25376 -5.77774 -3.13722 1.09294 2.11275 2.28143 2.59839 2.89276 3.36523 3.40322 3.45238 3.89371 4.14472 4.29070 4.37344 4.41561 4.42729 4.58551 4.63081 4.67585 4.76513 4.87826 4.93376 5.00753 5.04307 5.16660 5.18449 5.25534 5.29529 5.34917 5.38549 5.39270 5.47920 5.52138 5.59040 5.62063 5.68071 5.77432 5.80468 5.83540 5.95478 5.98586 6.05281 6.10155 6.23274 6.31452 6.36038 6.58861 6.71801 7.52230 7.97395 8.00219 8.13590 8.40869 9.19545 9.91924 10.11025 11.40592 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017267 B = 0.001861 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.156718 B =15045.300842 C =15892.583796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 H 0.086 0.914 4 C 0.104 3.896 5 N -0.621 5.621 6 C 0.526 3.474 7 O -0.538 6.538 8 C -0.134 4.134 9 C -0.105 4.105 10 C -0.115 4.115 11 C -0.051 4.051 12 C -0.004 4.004 13 C -0.050 4.050 14 N -0.266 5.266 15 N -0.085 5.085 16 N -0.390 5.390 17 H 0.448 0.552 18 C 0.107 3.893 19 C -0.108 4.108 20 H 0.086 0.914 21 C 0.167 3.833 22 N -0.756 5.756 23 C -0.245 4.245 24 H 0.090 0.910 25 C 0.005 3.995 26 N -0.933 5.933 27 Si 0.883 3.117 28 H -0.283 1.283 29 H -0.290 1.290 30 H -0.277 1.277 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.098 0.902 43 H 0.081 0.919 44 H 0.191 0.809 45 H 0.061 0.939 46 H 0.089 0.911 47 H 0.027 0.973 48 H 0.030 0.970 49 H 0.361 0.639 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.918 -0.948 -28.426 28.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.104 0.896 4 C -0.019 4.019 5 N -0.355 5.355 6 C 0.315 3.685 7 O -0.415 6.415 8 C -0.174 4.174 9 C -0.143 4.143 10 C -0.153 4.153 11 C -0.090 4.090 12 C -0.138 4.138 13 C -0.207 4.207 14 N -0.133 5.133 15 N -0.065 5.065 16 N -0.111 5.111 17 H 0.293 0.707 18 C -0.015 4.015 19 C -0.127 4.127 20 H 0.104 0.896 21 C 0.040 3.960 22 N -0.401 5.401 23 C -0.375 4.375 24 H 0.107 0.893 25 C -0.190 4.190 26 N -0.581 5.581 27 Si 0.713 3.287 28 H -0.209 1.209 29 H -0.217 1.217 30 H -0.204 1.204 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.117 0.883 43 H 0.100 0.900 44 H 0.208 0.792 45 H 0.079 0.921 46 H 0.108 0.892 47 H 0.045 0.955 48 H 0.048 0.952 49 H 0.193 0.807 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.144 -0.288 -29.489 29.513 hybrid contribution 0.029 -1.403 1.550 2.091 sum -1.115 -1.691 -27.939 28.012 Atomic orbital electron populations 1.21735 0.93726 1.02018 1.02309 1.22218 0.96120 0.99824 0.93775 0.89608 1.22578 0.83187 0.98560 0.97624 1.48866 1.08304 1.66229 1.12124 1.20327 0.82066 0.77827 0.88259 1.90740 1.29767 1.47710 1.73310 1.21632 0.99937 1.03385 0.92473 1.21353 0.95733 1.03451 0.93800 1.21624 0.95642 1.02219 0.95812 1.20226 0.98926 1.03663 0.86196 1.22407 1.06273 0.86237 0.98872 1.23454 1.07273 1.02095 0.87840 1.75110 1.14729 0.97081 1.26423 1.78311 1.18610 1.16583 0.93025 1.45169 1.46475 1.12118 1.07363 0.70682 1.22185 1.00219 0.98564 0.80574 1.22444 0.96597 0.98101 0.95565 0.89599 1.20667 0.96686 0.92640 0.85983 1.42712 1.78878 1.04260 1.14283 1.19037 1.34678 0.93153 0.90634 0.89254 1.24666 1.00986 0.97309 0.96079 1.69697 1.49047 1.34316 1.05072 0.86568 0.77921 0.87355 0.76818 1.20939 1.21684 1.20365 0.91639 0.92565 0.92457 0.90351 0.90873 0.89043 0.89028 0.90662 0.90799 0.91788 0.91012 0.88323 0.90009 0.79234 0.92064 0.89211 0.95476 0.95194 0.80683 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.17 37.16 0.34 -0.82 16 2 C -0.10 -1.01 3.19 -88.93 -0.28 -1.29 16 3 H 0.09 0.91 7.87 -51.93 -0.41 0.50 16 4 C 0.10 0.90 6.38 -2.31 -0.01 0.88 16 5 N -0.62 -7.67 3.29 -169.98 -0.56 -8.23 16 6 C 0.53 6.73 7.89 -10.98 -0.09 6.65 16 7 O -0.54 -9.33 16.32 5.56 0.09 -9.24 16 8 C -0.13 -1.01 4.63 -27.88 -0.13 -1.13 16 9 C -0.11 -0.71 4.50 -26.73 -0.12 -0.83 16 10 C -0.11 -0.48 5.20 -26.73 -0.14 -0.62 16 11 C -0.05 -0.19 5.78 -27.89 -0.16 -0.35 16 12 C 0.00 -0.02 6.56 -82.09 -0.54 -0.56 16 13 C -0.05 -0.36 11.99 -17.74 -0.21 -0.57 16 14 N -0.27 -2.77 12.41 30.24 0.38 -2.39 16 15 N -0.09 -0.81 13.38 60.35 0.81 -0.01 16 16 N -0.39 -2.30 6.98 33.54 0.23 -2.07 16 17 H 0.45 1.08 8.96 -190.40 -1.71 -0.62 16 18 C 0.11 1.60 6.31 -2.98 -0.02 1.58 16 19 C -0.11 -1.49 2.64 -89.25 -0.24 -1.73 16 20 H 0.09 1.17 7.85 -51.93 -0.41 0.76 16 21 C 0.17 3.10 5.35 -4.04 -0.02 3.08 16 22 N -0.76 -17.72 5.14 -59.91 -0.31 -18.03 16 23 C -0.25 -6.96 10.47 -15.06 -0.16 -7.12 16 24 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 25 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 26 N -0.93 -29.48 13.97 55.49 0.78 -28.71 16 27 Si 0.88 22.26 27.73 -169.99 -4.71 17.55 16 28 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 29 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 30 H -0.28 -6.50 6.52 56.52 0.37 -6.14 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.44 8.11 -51.93 -0.42 0.02 16 34 H 0.08 0.49 7.23 -51.93 -0.38 0.11 16 35 H 0.07 0.55 8.02 -51.93 -0.42 0.13 16 36 H 0.09 0.55 7.90 -51.93 -0.41 0.14 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 39 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 40 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.19 0.84 8.06 -52.48 -0.42 0.42 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.09 1.68 7.49 -51.93 -0.39 1.29 16 47 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 49 H 0.36 8.26 5.37 -40.82 -0.22 8.05 16 50 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 LS Contribution 406.37 15.07 6.12 6.12 Total: -1.00 -37.55 406.37 -8.89 -46.44 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -9.84 Total: 1.33 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -1.87 Total: -2.77 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: 1.32 Total: -59.44 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.71 Total: 17.55 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -37.55 -8.89 -46.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106477702.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.737 kcal (2) G-P(sol) polarization free energy of solvation -37.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.04 seconds