Wall clock time and date at job start Wed Apr 1 2020 01:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.65937 * 2 1 4 4 C 1.54601 * 110.98865 * 236.84098 * 2 1 3 5 5 N 1.48118 * 103.41972 * 204.37430 * 4 2 1 6 6 C 1.34780 * 127.03068 * 219.28697 * 5 4 2 7 7 O 1.21279 * 120.00136 * 179.68690 * 6 5 4 8 8 C 1.50700 * 119.99830 * 359.68256 * 6 5 4 9 9 C 1.53000 * 109.46808 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47052 * 180.02562 * 9 8 6 11 11 C 1.53003 * 109.47392 * 180.02562 * 10 9 8 12 12 C 1.50690 * 109.47160 * 179.97438 * 11 10 9 13 13 C 1.35351 * 126.91729 * 274.95578 * 12 11 10 14 14 N 1.33769 * 106.50107 * 180.02562 * 13 12 11 15 15 N 1.28629 * 108.88659 * 359.97438 * 14 13 12 16 16 N 1.28714 * 110.17964 * 0.02562 * 15 14 13 17 17 H 0.97001 * 125.86941 * 179.73092 * 16 15 14 18 18 C 1.47480 * 105.93518 * 39.02397 * 5 4 2 19 19 C 1.53999 * 107.08446 * 334.77875 * 18 5 4 20 20 H 1.08998 * 110.32678 * 120.19777 * 19 18 5 21 21 C 1.53003 * 110.32622 * 242.30998 * 19 18 5 22 22 N 1.46498 * 109.46867 * 293.54363 * 21 19 18 23 23 C 1.36941 * 119.99723 * 179.97438 * 22 21 19 24 24 H 1.08004 * 119.99985 * 0.02562 * 23 22 21 25 25 C 1.38812 * 120.00177 * 180.02562 * 23 22 21 26 26 N 1.31616 * 120.00268 * 180.02562 * 25 23 22 27 27 Si 1.86798 * 119.99631 * 359.97438 * 25 23 22 28 28 H 1.48507 * 109.47184 * 90.00588 * 27 25 23 29 29 H 1.48507 * 109.47063 * 210.00037 * 27 25 23 30 30 H 1.48495 * 109.47805 * 330.00340 * 27 25 23 31 31 H 1.09002 * 109.47266 * 296.81077 * 1 2 3 32 32 H 1.09001 * 109.46764 * 56.81332 * 1 2 3 33 33 H 1.09000 * 109.47083 * 176.81077 * 1 2 3 34 34 H 1.08996 * 110.61718 * 85.86078 * 4 2 1 35 35 H 1.09002 * 110.54737 * 322.85361 * 4 2 1 36 36 H 1.09003 * 109.46953 * 60.00575 * 8 6 5 37 37 H 1.08997 * 109.47733 * 300.00178 * 8 6 5 38 38 H 1.09000 * 109.47594 * 60.00256 * 9 8 6 39 39 H 1.09002 * 109.47793 * 299.99988 * 9 8 6 40 40 H 1.09004 * 109.47449 * 60.00315 * 10 9 8 41 41 H 1.08997 * 109.47509 * 300.00168 * 10 9 8 42 42 H 1.08996 * 109.46925 * 59.99575 * 11 10 9 43 43 H 1.09004 * 109.46804 * 300.00073 * 11 10 9 44 44 H 1.08004 * 126.74797 * 0.05551 * 13 12 11 45 45 H 1.09002 * 109.91286 * 94.14211 * 18 5 4 46 46 H 1.09003 * 109.91522 * 215.22472 * 18 5 4 47 47 H 1.08998 * 109.46823 * 53.54648 * 21 19 18 48 48 H 1.09001 * 109.46846 * 173.54594 * 21 19 18 49 49 H 0.96993 * 120.00648 * 0.02562 * 22 21 19 50 50 H 0.96996 * 120.00359 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0838 -0.7895 -1.2084 5 7 3.4321 -1.2057 -0.7583 6 6 4.5594 -1.2406 -1.4964 7 8 5.6027 -1.6000 -0.9933 8 6 4.5232 -0.8330 -2.9468 9 6 5.9239 -0.9640 -3.5483 10 6 5.8874 -0.5496 -5.0207 11 6 7.2879 -0.6812 -5.6225 12 6 7.2518 -0.2736 -7.0728 13 6 6.9244 -1.0544 -8.1288 14 7 7.0277 -0.2839 -9.2174 15 7 7.3941 0.8959 -8.8593 16 7 7.5403 0.9467 -7.5815 17 1 7.8142 1.7249 -7.0713 18 6 3.2903 -1.5680 0.6642 19 6 2.0776 -0.7916 1.2101 20 1 1.3222 -1.4829 1.5835 21 6 2.5154 0.1660 2.3202 22 7 2.9826 -0.6057 3.4745 23 6 3.4277 0.0418 4.5961 24 1 3.4339 1.1213 4.6298 25 6 3.8708 -0.6893 5.6897 26 7 4.2981 -0.0671 6.7679 27 14 3.8593 -2.5564 5.6317 28 1 5.1558 -3.0430 5.0953 29 1 3.6577 -3.0930 7.0016 30 1 2.7553 -3.0176 4.7520 31 1 -0.3634 0.4635 0.9172 32 1 -0.3633 0.5625 -0.8601 33 1 -0.3633 -1.0261 -0.0572 34 1 2.1525 -0.1481 -2.0870 35 1 1.4612 -1.6602 -1.4142 36 1 4.1891 0.2016 -3.0252 37 1 3.8334 -1.4797 -3.4889 38 1 6.2577 -1.9986 -3.4699 39 1 6.6141 -0.3175 -3.0063 40 1 5.5538 0.4853 -5.0988 41 1 5.1972 -1.1957 -5.5631 42 1 7.6211 -1.7160 -5.5444 43 1 7.9785 -0.0352 -5.0802 44 1 6.6361 -2.0948 -8.0984 45 1 3.1179 -2.6402 0.7589 46 1 4.1909 -1.2874 1.2104 47 1 3.3238 0.7996 1.9555 48 1 1.6713 0.7886 2.6168 49 1 2.9773 -1.5751 3.4442 50 1 4.6081 -0.5779 7.5320 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106477702.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:00:13 Heat of formation + Delta-G solvation = 24.055138 kcal Electronic energy + Delta-G solvation = -28038.775274 eV Core-core repulsion = 24101.490495 eV Total energy + Delta-G solvation = -3937.284779 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 4.85 seconds Orbital eigenvalues (eV) -44.26051 -41.21236 -39.25623 -36.81401 -36.59310 -34.38279 -34.19884 -33.34923 -33.25706 -31.15579 -29.98831 -27.58206 -27.18487 -25.74301 -24.59340 -23.95882 -22.92470 -22.38291 -21.95622 -21.07631 -20.17468 -19.67306 -19.11747 -17.91814 -17.34861 -17.02283 -16.79103 -16.62531 -16.23504 -15.92113 -15.46169 -15.42982 -15.18003 -15.03195 -14.80441 -14.32393 -14.13990 -13.91300 -13.73686 -13.58195 -13.42467 -13.20395 -13.01459 -12.90312 -12.81901 -12.60076 -12.51833 -12.25548 -12.13218 -12.09389 -11.89260 -11.84208 -11.79806 -11.58280 -11.49458 -11.43716 -11.41492 -11.03455 -10.86247 -10.09913 -9.70107 -9.34115 -8.06774 -5.40344 0.60408 1.32890 1.38118 1.44139 1.56011 1.66268 1.90433 2.01580 2.44422 3.24686 3.35484 3.46467 3.56547 3.68979 3.74747 3.83696 3.95937 4.00173 4.05311 4.18175 4.21794 4.39867 4.43817 4.49879 4.51719 4.56715 4.59516 4.66002 4.67704 4.75365 4.80066 4.86356 4.91760 4.94490 4.99227 5.01024 5.10480 5.15629 5.20837 5.23718 5.27487 5.37778 5.39567 5.50902 5.57226 5.71250 6.00829 6.17062 6.61663 7.03769 7.18973 7.45254 7.79619 7.98288 9.14758 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017267 B = 0.001861 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.156718 B =15045.300842 C =15892.583796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.093 4.093 3 H 0.080 0.920 4 C 0.106 3.894 5 N -0.623 5.623 6 C 0.515 3.485 7 O -0.597 6.597 8 C -0.124 4.124 9 C -0.102 4.102 10 C -0.103 4.103 11 C -0.047 4.047 12 C 0.012 3.988 13 C -0.061 4.061 14 N -0.306 5.306 15 N -0.119 5.119 16 N -0.378 5.378 17 H 0.461 0.539 18 C 0.106 3.894 19 C -0.098 4.098 20 H 0.096 0.904 21 C 0.166 3.834 22 N -0.758 5.758 23 C -0.237 4.237 24 H 0.055 0.945 25 C -0.063 4.063 26 N -0.982 5.982 27 Si 0.952 3.048 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.247 1.247 31 H 0.050 0.950 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.122 0.878 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.107 0.893 43 H 0.090 0.910 44 H 0.213 0.787 45 H 0.065 0.935 46 H 0.042 0.958 47 H 0.011 0.989 48 H 0.033 0.967 49 H 0.365 0.635 50 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.065 -2.210 -31.115 31.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.113 4.113 3 H 0.098 0.902 4 C -0.015 4.015 5 N -0.356 5.356 6 C 0.306 3.694 7 O -0.478 6.478 8 C -0.163 4.163 9 C -0.140 4.140 10 C -0.142 4.142 11 C -0.086 4.086 12 C -0.123 4.123 13 C -0.219 4.219 14 N -0.172 5.172 15 N -0.099 5.099 16 N -0.101 5.101 17 H 0.309 0.691 18 C -0.017 4.017 19 C -0.117 4.117 20 H 0.114 0.886 21 C 0.040 3.960 22 N -0.403 5.403 23 C -0.368 4.368 24 H 0.073 0.927 25 C -0.254 4.254 26 N -0.633 5.633 27 Si 0.779 3.221 28 H -0.211 1.211 29 H -0.218 1.218 30 H -0.171 1.171 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.133 0.867 35 H 0.114 0.886 36 H 0.133 0.867 37 H 0.140 0.860 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.126 0.874 43 H 0.109 0.891 44 H 0.229 0.771 45 H 0.083 0.917 46 H 0.061 0.939 47 H 0.029 0.971 48 H 0.051 0.949 49 H 0.198 0.802 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.348 -1.509 -32.253 32.461 hybrid contribution 0.723 -0.902 2.444 2.704 sum -2.624 -2.412 -29.808 30.021 Atomic orbital electron populations 1.21711 0.91759 1.03053 1.02765 1.22224 0.97596 0.99101 0.92366 0.90204 1.22849 0.80975 0.99824 0.97827 1.49030 1.09978 1.65746 1.10872 1.21429 0.81134 0.76608 0.90193 1.90712 1.31932 1.50324 1.74820 1.21714 1.01017 1.05149 0.88463 1.21294 0.95106 1.02372 0.95256 1.21514 0.96007 1.02833 0.93799 1.20281 0.99124 1.04435 0.84799 1.22636 1.04734 0.85637 0.99329 1.23957 1.07271 1.03169 0.87477 1.75061 1.16053 0.97864 1.28198 1.78249 1.20310 1.16759 0.94548 1.45215 1.45339 1.12889 1.06667 0.69059 1.21985 0.98452 0.98900 0.82395 1.22341 0.96376 0.97599 0.95412 0.88585 1.20815 0.95880 0.93398 0.85933 1.42727 1.78699 1.04692 1.14217 1.19036 1.33600 0.91979 0.92195 0.92682 1.25510 1.01404 1.02757 0.95768 1.69877 1.50934 1.36408 1.06060 0.85449 0.78676 0.80777 0.77180 1.21103 1.21759 1.17086 0.93056 0.90061 0.91379 0.86743 0.88591 0.86712 0.85994 0.91916 0.92694 0.91026 0.89891 0.87421 0.89127 0.77062 0.91673 0.93929 0.97132 0.94898 0.80157 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.17 71.98 0.66 -1.03 16 2 C -0.09 -1.58 3.19 -9.70 -0.03 -1.62 16 3 H 0.08 1.48 7.87 -2.39 -0.02 1.46 16 4 C 0.11 1.36 6.38 86.61 0.55 1.91 16 5 N -0.62 -14.09 3.29 -810.08 -2.67 -16.76 16 6 C 0.51 12.42 7.89 87.66 0.69 13.11 16 7 O -0.60 -21.06 16.32 -3.03 -0.05 -21.10 16 8 C -0.12 -1.42 4.63 29.85 0.14 -1.28 16 9 C -0.10 -1.15 4.50 30.60 0.14 -1.01 16 10 C -0.10 -0.51 5.20 30.60 0.16 -0.35 16 11 C -0.05 -0.22 5.78 29.85 0.17 -0.05 16 12 C 0.01 0.11 6.56 41.35 0.27 0.38 16 13 C -0.06 -0.78 11.99 83.73 1.00 0.23 16 14 N -0.31 -6.17 12.41 -58.25 -0.72 -6.89 16 15 N -0.12 -2.21 13.38 37.02 0.50 -1.71 16 16 N -0.38 -3.90 6.98 -47.79 -0.33 -4.23 16 17 H 0.46 1.49 8.96 -219.96 -1.97 -0.48 16 18 C 0.11 3.12 6.31 86.53 0.55 3.66 16 19 C -0.10 -2.57 2.64 -9.90 -0.03 -2.59 16 20 H 0.10 2.37 7.85 -2.39 -0.02 2.35 16 21 C 0.17 6.17 5.35 86.38 0.46 6.63 16 22 N -0.76 -35.86 5.14 -343.45 -1.76 -37.63 16 23 C -0.24 -13.88 10.47 84.03 0.88 -13.00 16 24 H 0.06 3.53 8.06 -2.91 -0.02 3.50 16 25 C -0.06 -3.79 5.50 84.86 0.47 -3.32 16 26 N -0.98 -64.11 13.97 21.65 0.30 -63.81 16 27 Si 0.95 46.43 27.73 68.60 1.90 48.34 16 28 H -0.28 -13.88 7.11 99.48 0.71 -13.18 16 29 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 30 H -0.25 -10.64 6.52 99.48 0.65 -9.99 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 32 H 0.08 0.65 8.14 -2.39 -0.02 0.64 16 33 H 0.07 0.73 8.11 -2.39 -0.02 0.71 16 34 H 0.11 0.72 7.23 -2.39 -0.02 0.70 16 35 H 0.10 0.89 8.02 -2.39 -0.02 0.87 16 36 H 0.11 0.84 7.90 -2.39 -0.02 0.82 16 37 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.06 0.87 8.10 -2.39 -0.02 0.85 16 39 H 0.05 0.83 8.10 -2.39 -0.02 0.81 16 40 H 0.07 0.29 8.14 -2.38 -0.02 0.27 16 41 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 42 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 43 H 0.09 0.31 8.14 -2.38 -0.02 0.29 16 44 H 0.21 1.41 8.06 -2.91 -0.02 1.38 16 45 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.04 1.65 7.49 -2.39 -0.02 1.63 16 47 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 48 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.37 16.49 5.37 -92.71 -0.50 16.00 16 50 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 Total: -1.00 -87.83 406.37 1.66 -86.17 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -1.59 Total: 15.94 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 6.09 Total: 1.68 kcal Atomic # 7 Polarization: -126.33 SS G_CDS: -4.69 Total: -131.02 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.05 Total: -21.10 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.90 Total: 48.34 kcal Total: -87.83 1.66 -86.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106477702.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.223 kcal (2) G-P(sol) polarization free energy of solvation -87.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.85 seconds