Wall clock time and date at job start Wed Apr 1 2020 00:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 110.29133 * 2 1 4 4 C 1.54008 * 110.32367 * 237.86309 * 2 1 3 5 5 N 1.47489 * 107.08408 * 242.31030 * 4 2 1 6 6 C 1.34780 * 127.03162 * 154.51536 * 5 4 2 7 7 O 1.21552 * 119.99703 * 180.02562 * 6 5 4 8 8 C 1.47868 * 119.99710 * 0.03074 * 6 5 4 9 9 N 1.34545 * 126.05067 * 359.97134 * 8 6 5 10 10 C 1.30873 * 107.26806 * 180.02562 * 9 8 6 11 11 N 1.34584 * 107.62507 * 0.02562 * 10 9 8 12 12 C 1.46506 * 125.74646 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47035 * 75.00338 * 12 11 10 14 14 C 1.53005 * 109.46831 * 194.99935 * 12 11 10 15 15 C 1.52997 * 109.47289 * 315.00263 * 12 11 10 16 16 N 1.28849 * 108.50500 * 0.24285 * 11 10 9 17 17 C 1.48118 * 105.93079 * 334.78200 * 5 4 2 18 18 C 1.54589 * 103.42369 * 39.02456 * 17 5 4 19 19 H 1.09003 * 110.58051 * 81.16772 * 18 17 5 20 20 C 1.53006 * 110.98808 * 204.37106 * 18 17 5 21 21 N 1.46501 * 109.46948 * 288.65248 * 20 18 17 22 22 C 1.36937 * 119.99678 * 180.02562 * 21 20 18 23 23 H 1.07998 * 120.00108 * 359.97438 * 22 21 20 24 24 C 1.38813 * 119.99884 * 179.97438 * 22 21 20 25 25 N 1.31620 * 119.99944 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00070 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46625 * 89.99945 * 26 24 22 28 28 H 1.48494 * 109.47195 * 210.00102 * 26 24 22 29 29 H 1.48501 * 109.47187 * 330.00404 * 26 24 22 30 30 H 1.09000 * 109.47374 * 180.68232 * 1 2 3 31 31 H 1.09000 * 109.47035 * 300.68241 * 1 2 3 32 32 H 1.08993 * 109.47193 * 60.68247 * 1 2 3 33 33 H 1.08996 * 109.91022 * 122.95424 * 4 2 1 34 34 H 1.08997 * 110.07446 * 1.76097 * 4 2 1 35 35 H 1.08001 * 126.19000 * 179.97438 * 10 9 8 36 36 H 1.09004 * 109.47059 * 59.99372 * 13 12 11 37 37 H 1.08992 * 109.47060 * 179.97438 * 13 12 11 38 38 H 1.09004 * 109.46930 * 299.99770 * 13 12 11 39 39 H 1.09001 * 109.46812 * 60.00445 * 14 12 11 40 40 H 1.09002 * 109.46935 * 180.02562 * 14 12 11 41 41 H 1.08992 * 109.47061 * 300.00078 * 14 12 11 42 42 H 1.08996 * 109.46952 * 59.99873 * 15 12 11 43 43 H 1.09002 * 109.47153 * 180.02562 * 15 12 11 44 44 H 1.09001 * 109.46832 * 299.99854 * 15 12 11 45 45 H 1.09001 * 110.65444 * 157.50649 * 17 5 4 46 46 H 1.09000 * 110.66188 * 280.61657 * 17 5 4 47 47 H 1.08997 * 109.46829 * 48.65277 * 20 18 17 48 48 H 1.08999 * 109.47386 * 168.64842 * 20 18 17 49 49 H 0.96996 * 120.00388 * 359.97438 * 21 20 18 50 50 H 0.96996 * 119.99567 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0649 -0.7682 -1.2229 5 7 2.8297 -1.9204 -0.7102 6 6 3.0644 -3.0861 -1.3448 7 8 3.7153 -3.9551 -0.7985 8 6 2.5300 -3.3076 -2.7057 9 7 1.7977 -2.4342 -3.4207 10 6 1.5223 -3.0043 -4.5660 11 7 2.0831 -4.2277 -4.5576 12 6 2.0193 -5.2061 -5.6462 13 6 2.9606 -4.7768 -6.7735 14 6 2.4435 -6.5798 -5.1228 15 6 0.5873 -5.2833 -6.1793 16 7 2.6808 -4.3958 -3.4285 17 6 3.2816 -1.5369 0.6472 18 6 2.0693 -0.7721 1.2262 19 1 1.3209 -1.4693 1.6031 20 6 2.5072 0.1966 2.3267 21 7 2.9002 -0.5619 3.5169 22 6 3.3309 0.0971 4.6373 23 1 3.3812 1.1759 4.6435 24 6 3.7027 -0.6215 5.7653 25 7 3.6408 -1.9362 5.7580 26 14 4.2909 0.2774 7.2935 27 1 3.1298 0.5749 8.1703 28 1 5.2598 -0.5757 8.0274 29 1 4.9505 1.5476 6.8976 30 1 -0.3634 -1.0276 0.0122 31 1 -0.3633 0.5244 0.8838 32 1 -0.3633 0.5032 -0.8960 33 1 2.7166 -0.1222 -1.8111 34 1 1.2353 -1.1173 -1.8377 35 1 0.9480 -2.5717 -5.3719 36 1 3.9809 -4.7217 -6.3936 37 1 2.9135 -5.5049 -7.5832 38 1 2.6584 -3.7981 -7.1463 39 1 1.7729 -6.8856 -4.3198 40 1 2.3965 -7.3076 -5.9329 41 1 3.4637 -6.5247 -4.7432 42 1 0.2851 -4.3046 -6.5521 43 1 0.5397 -6.0115 -6.9890 44 1 -0.0833 -5.5891 -5.3762 45 1 3.4980 -2.4224 1.2449 46 1 4.1541 -0.8859 0.5925 47 1 3.3540 0.7863 1.9757 48 1 1.6801 0.8612 2.5760 49 1 2.8546 -1.5308 3.5115 50 1 3.9003 -2.4383 6.5463 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106663086.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:59:53 Heat of formation + Delta-G solvation = 70.961064 kcal Electronic energy + Delta-G solvation = -29296.162096 eV Core-core repulsion = 25360.911310 eV Total energy + Delta-G solvation = -3935.250786 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.70476 -39.82141 -37.94101 -37.47834 -34.58555 -33.09208 -32.46405 -31.35840 -31.14981 -29.05533 -28.16480 -28.02566 -26.44688 -25.82476 -24.05845 -23.30120 -22.74995 -21.05056 -20.45078 -19.75913 -19.57843 -17.61302 -16.99372 -16.83638 -16.54852 -16.02954 -15.57715 -14.83585 -14.75631 -14.63341 -14.42025 -14.10851 -13.90624 -13.45099 -13.37261 -13.13720 -13.07929 -12.92099 -12.86959 -12.77034 -12.43679 -12.33559 -12.25498 -11.97775 -11.88447 -11.71280 -11.52624 -11.16753 -11.03432 -10.79537 -10.61248 -10.54322 -10.40866 -10.30990 -10.22598 -9.98833 -9.91995 -9.70927 -9.58781 -8.81009 -8.45356 -6.84976 -5.68558 -2.97695 1.30920 1.83933 1.97015 2.94806 3.43144 3.49050 3.53666 3.55971 3.76375 3.91914 4.02777 4.13685 4.37345 4.54537 4.65058 4.77460 4.80893 4.90235 4.94873 4.96182 5.03995 5.09286 5.11459 5.19860 5.30640 5.47966 5.49137 5.63159 5.65301 5.67783 5.71007 5.77489 5.82675 5.97470 6.03167 6.11190 6.16108 6.20783 6.23443 6.27763 6.32978 6.39423 6.50356 6.64304 6.80771 6.94792 7.62693 7.76620 7.84825 8.28089 8.49734 9.60768 10.18822 10.53178 11.54142 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.023216 B = 0.002243 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.791363 B =12482.484713 C =13271.217845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.102 4.102 3 H 0.086 0.914 4 C 0.106 3.894 5 N -0.602 5.602 6 C 0.627 3.373 7 O -0.519 6.519 8 C 0.149 3.851 9 N -0.479 5.479 10 C 0.184 3.816 11 N -0.293 5.293 12 C 0.167 3.833 13 C -0.159 4.159 14 C -0.150 4.150 15 C -0.160 4.160 16 N -0.248 5.248 17 C 0.118 3.882 18 C -0.102 4.102 19 H 0.083 0.917 20 C 0.166 3.834 21 N -0.733 5.733 22 C -0.239 4.239 23 H 0.070 0.930 24 C -0.015 4.015 25 N -0.932 5.932 26 Si 0.907 3.093 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.220 0.780 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.070 0.930 45 H 0.090 0.910 46 H 0.078 0.922 47 H 0.022 0.978 48 H 0.024 0.976 49 H 0.384 0.616 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.306 -3.944 -31.987 33.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.122 4.122 3 H 0.104 0.896 4 C -0.016 4.016 5 N -0.335 5.335 6 C 0.411 3.589 7 O -0.392 6.392 8 C -0.131 4.131 9 N -0.205 5.205 10 C -0.111 4.111 11 N -0.090 5.090 12 C 0.085 3.915 13 C -0.218 4.218 14 C -0.207 4.207 15 C -0.218 4.218 16 N -0.086 5.086 17 C -0.004 4.004 18 C -0.122 4.122 19 H 0.102 0.898 20 C 0.038 3.962 21 N -0.378 5.378 22 C -0.370 4.370 23 H 0.088 0.912 24 C -0.211 4.211 25 N -0.580 5.580 26 Si 0.738 3.262 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.115 0.885 35 H 0.236 0.764 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.089 0.911 45 H 0.109 0.891 46 H 0.096 0.904 47 H 0.040 0.960 48 H 0.042 0.958 49 H 0.218 0.782 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.597 -4.625 -31.280 32.520 hybrid contribution 0.114 0.255 0.486 0.561 sum -7.483 -4.370 -30.794 31.990 Atomic orbital electron populations 1.21799 0.94292 1.01823 1.01663 1.22124 0.96321 0.99690 0.94016 0.89593 1.22409 0.96429 0.86682 0.96121 1.48461 1.52827 1.14095 1.18120 1.15811 0.80156 0.81375 0.81559 1.90857 1.39856 1.42742 1.65793 1.23712 1.02728 0.88563 0.98052 1.71376 1.15896 1.30073 1.03130 1.26364 1.01048 0.84956 0.98716 1.47788 1.35605 1.13752 1.11868 1.21166 0.98085 0.88441 0.83842 1.22263 0.99643 1.02806 0.97049 1.22003 1.03950 0.92707 1.02045 1.22261 0.93138 1.03883 1.02516 1.74317 1.16211 1.23961 0.94100 1.22575 0.97048 1.00240 0.80494 1.22520 0.96979 0.97889 0.94785 0.89831 1.20627 0.96585 0.92726 0.86306 1.42388 1.79250 1.05973 1.10139 1.19208 1.35856 0.91229 0.90751 0.91187 1.24756 1.02495 0.95489 0.98315 1.69667 1.54448 1.04518 1.29378 0.86195 0.78127 0.78453 0.83437 1.21807 1.21822 1.20796 0.92795 0.92080 0.92755 0.91833 0.88485 0.76371 0.91208 0.89576 0.91348 0.91183 0.90315 0.90467 0.91128 0.89316 0.91093 0.89138 0.90393 0.96040 0.95848 0.78192 0.93514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.90 37.16 0.33 -1.29 16 2 C -0.10 -1.34 3.17 -89.24 -0.28 -1.62 16 3 H 0.09 1.05 7.85 -51.93 -0.41 0.64 16 4 C 0.11 1.41 5.92 -2.98 -0.02 1.40 16 5 N -0.60 -9.92 3.29 -171.08 -0.56 -10.49 16 6 C 0.63 11.42 7.90 -12.32 -0.10 11.32 16 7 O -0.52 -11.30 17.29 5.32 0.09 -11.21 16 8 C 0.15 2.29 7.81 -156.35 -1.22 1.07 16 9 N -0.48 -5.91 8.57 -12.36 -0.11 -6.01 16 10 C 0.18 1.58 11.71 -90.48 -1.06 0.52 16 11 N -0.29 -2.76 3.17 -49.83 -0.16 -2.92 16 12 C 0.17 0.92 1.23 -131.81 -0.16 0.76 16 13 C -0.16 -0.61 8.72 37.16 0.32 -0.29 16 14 C -0.15 -0.93 8.04 37.16 0.30 -0.63 16 15 C -0.16 -0.46 8.28 37.16 0.31 -0.15 16 16 N -0.25 -3.49 11.09 32.07 0.36 -3.13 16 17 C 0.12 2.10 6.44 -2.32 -0.01 2.08 16 18 C -0.10 -1.72 2.60 -88.93 -0.23 -1.95 16 19 H 0.08 1.51 7.86 -51.93 -0.41 1.11 16 20 C 0.17 3.33 5.59 -4.04 -0.02 3.30 16 21 N -0.73 -18.92 5.52 -59.91 -0.33 -19.25 16 22 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 23 H 0.07 1.93 7.83 -52.49 -0.41 1.51 16 24 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 25 N -0.93 -29.05 13.06 55.49 0.72 -28.33 16 26 Si 0.91 22.94 29.55 -169.99 -5.02 17.91 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 28 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 29 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.10 1.25 5.69 -51.93 -0.30 0.95 16 35 H 0.22 0.78 7.53 -52.49 -0.39 0.39 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 38 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.08 0.63 8.03 -51.93 -0.42 0.22 16 42 H 0.07 0.11 7.34 -51.93 -0.38 -0.27 16 43 H 0.09 0.10 8.14 -51.93 -0.42 -0.33 16 44 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.09 1.85 7.85 -51.93 -0.41 1.44 16 46 H 0.08 1.37 7.95 -51.93 -0.41 0.96 16 47 H 0.02 0.43 8.00 -51.93 -0.42 0.02 16 48 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.38 10.56 7.67 -40.82 -0.31 10.25 16 50 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 404.28 15.07 6.09 6.09 Total: -1.00 -36.68 404.28 -9.48 -46.16 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -8.47 Total: 4.16 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: -2.09 Total: 7.02 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: -0.08 Total: -70.13 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.21 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.68 -9.48 -46.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106663086.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.125 kcal (2) G-P(sol) polarization free energy of solvation -36.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds