Wall clock time and date at job start Tue Mar 31 2020 21:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47154 * 2 1 4 4 N 1.27941 * 120.00210 * 94.99256 * 3 2 1 5 5 Si 1.86798 * 119.99848 * 274.99639 * 3 2 1 6 6 H 1.48496 * 109.47112 * 359.97438 * 5 3 2 7 7 H 1.48505 * 109.47409 * 119.99881 * 5 3 2 8 8 H 1.48497 * 109.47190 * 239.99852 * 5 3 2 9 9 C 1.50706 * 109.47061 * 119.99576 * 2 1 3 10 10 O 1.21280 * 120.00168 * 240.00624 * 9 2 1 11 11 N 1.34773 * 119.99855 * 60.00280 * 9 2 1 12 12 C 1.46501 * 120.00173 * 180.02562 * 11 9 2 13 13 H 1.09001 * 107.84621 * 328.46347 * 12 11 9 14 14 C 1.50952 * 108.03196 * 84.99774 * 12 11 9 15 15 C 1.53670 * 110.95576 * 194.30312 * 14 12 11 16 16 C 1.51889 * 106.90405 * 280.89449 * 15 14 12 17 17 N 1.29889 * 127.81506 * 245.24196 * 16 15 14 18 18 N 1.29034 * 109.22147 * 179.66417 * 17 16 15 19 19 C 1.30969 * 109.70775 * 0.06095 * 18 17 16 20 20 C 1.50697 * 126.60485 * 180.34672 * 19 18 17 21 21 N 1.46902 * 109.47185 * 269.68675 * 20 19 18 22 22 C 1.46905 * 111.00010 * 180.02562 * 21 20 19 23 23 C 1.52996 * 109.47305 * 85.00010 * 22 21 20 24 24 C 1.53001 * 109.47106 * 205.00061 * 22 21 20 25 25 N 1.34600 * 124.55892 * 65.06550 * 16 15 14 26 26 C 1.47498 * 125.04637 * 0.56034 * 25 16 15 27 27 C 1.50868 * 108.02854 * 211.93463 * 12 11 9 28 28 H 1.08992 * 109.47484 * 300.00402 * 1 2 3 29 29 H 1.09005 * 109.46990 * 60.00563 * 1 2 3 30 30 H 1.09005 * 109.47192 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47607 * 239.99583 * 2 1 3 32 32 H 0.97003 * 120.00194 * 180.02562 * 4 3 2 33 33 H 0.97002 * 120.00104 * 0.02562 * 11 9 2 34 34 H 1.08999 * 109.17903 * 73.92160 * 14 12 11 35 35 H 1.08999 * 109.14047 * 314.65333 * 14 12 11 36 36 H 1.09004 * 109.96630 * 161.55255 * 15 14 12 37 37 H 1.08993 * 110.04280 * 40.29032 * 15 14 12 38 38 H 1.08998 * 109.47591 * 29.69242 * 20 19 18 39 39 H 1.09007 * 109.46985 * 149.69166 * 20 19 18 40 40 H 1.00899 * 110.99873 * 56.05173 * 21 20 19 41 41 H 1.09007 * 109.46757 * 324.99934 * 22 21 20 42 42 H 1.08998 * 109.46986 * 180.02562 * 23 22 21 43 43 H 1.09001 * 109.47104 * 300.00249 * 23 22 21 44 44 H 1.09000 * 109.47457 * 59.99934 * 23 22 21 45 45 H 1.09002 * 109.47066 * 60.00110 * 24 22 21 46 46 H 1.08998 * 109.47013 * 179.97438 * 24 22 21 47 47 H 1.08993 * 109.47264 * 300.00134 * 24 22 21 48 48 H 1.09006 * 109.92967 * 53.40962 * 26 25 16 49 49 H 1.09002 * 109.93131 * 174.61932 * 26 25 16 50 50 H 1.09001 * 109.14157 * 285.98801 * 27 12 11 51 51 H 1.09000 * 109.14690 * 45.13879 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3365 1.9918 1.1038 5 14 2.2108 2.3483 -1.6116 6 1 1.7970 1.4710 -2.7360 7 1 1.3501 3.5582 -1.5845 8 1 3.6277 2.7529 -1.7956 9 6 2.0323 -0.7103 1.2306 10 8 2.7295 -0.1209 2.0289 11 7 1.7067 -2.0007 1.4439 12 6 2.1946 -2.6911 2.6404 13 1 3.1657 -2.2682 2.8975 14 6 1.2412 -2.3942 3.7725 15 6 1.8586 -2.7789 5.1261 16 6 1.7125 -4.2843 5.2663 17 7 1.0012 -4.9378 6.1347 18 7 1.1323 -6.2042 5.9244 19 6 1.9370 -6.4025 4.9103 20 6 2.3478 -7.7338 4.3361 21 7 3.5662 -8.2026 5.0096 22 6 3.9976 -9.5008 4.4740 23 6 4.8525 -9.2784 3.2248 24 6 4.8209 -10.2403 5.5305 25 7 2.3219 -5.1875 4.4760 26 6 3.2323 -4.8610 3.3624 27 6 2.3961 -4.1448 2.2910 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 2.6595 2.9065 1.1038 33 1 1.1494 -2.4722 0.8052 34 1 0.3218 -2.9606 3.6243 35 1 1.0093 -1.3292 3.7745 36 1 1.3267 -2.2765 5.9341 37 1 2.9130 -2.5037 5.1474 38 1 1.5472 -8.4577 4.4880 39 1 2.5416 -7.6250 3.2689 40 1 3.4318 -8.2500 6.0085 41 1 3.1219 -10.0955 4.2139 42 1 5.1721 -10.2417 2.8272 43 1 4.2660 -8.7516 2.4722 44 1 5.7281 -8.6837 3.4849 45 1 4.2118 -10.3987 6.4204 46 1 5.1405 -11.2037 5.1332 47 1 5.6964 -9.6456 5.7907 48 1 4.0281 -4.2039 3.7135 49 1 3.6589 -5.7758 2.9509 50 1 1.4240 -4.6315 2.2117 51 1 2.9090 -4.2142 1.3317 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127964616.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:21 Heat of formation + Delta-G solvation = 67.443156 kcal Electronic energy + Delta-G solvation = -30117.364380 eV Core-core repulsion = 26168.305307 eV Total energy + Delta-G solvation = -3949.059073 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.214 amu Computer time = 11.35 seconds Orbital eigenvalues (eV) -44.39543 -41.13382 -38.72284 -38.39146 -36.68844 -35.73760 -34.80193 -33.47550 -32.94180 -31.73012 -30.39871 -28.18202 -27.26786 -26.49517 -25.79107 -25.21572 -22.92518 -22.30692 -21.62646 -21.47897 -21.25274 -20.20545 -18.71482 -18.27939 -17.40632 -17.33662 -16.84131 -16.59413 -16.29526 -16.12330 -16.08240 -15.51264 -15.36298 -15.28968 -14.71444 -14.55499 -14.32758 -14.22417 -13.96361 -13.93929 -13.71983 -13.50227 -13.40453 -13.15155 -12.98874 -12.96181 -12.69556 -12.66624 -12.61397 -12.48163 -12.31627 -12.18598 -12.11055 -12.09290 -11.84180 -11.77645 -11.37235 -11.33625 -11.19791 -10.71748 -10.23497 -10.00850 -9.56616 -9.50047 0.77369 0.94155 1.12386 1.47647 1.50870 1.73322 1.78967 1.85004 1.90531 2.29180 2.97642 3.16706 3.36708 3.44212 3.46829 3.64513 3.74613 3.86390 3.88946 3.98942 4.07899 4.16005 4.17434 4.20822 4.24188 4.29531 4.32502 4.39159 4.44035 4.46124 4.55071 4.73121 4.79536 4.82163 4.85365 4.90836 4.94273 4.95583 4.97920 4.99938 5.01118 5.03298 5.09732 5.11730 5.17728 5.27376 5.34771 5.42931 5.56590 5.84968 5.95412 6.19087 6.67872 7.05323 7.47466 7.67106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.085 4.085 3 C -0.020 4.020 4 N -0.620 5.620 5 Si 0.978 3.022 6 H -0.209 1.209 7 H -0.260 1.260 8 H -0.267 1.267 9 C 0.512 3.488 10 O -0.543 6.543 11 N -0.723 5.723 12 C 0.147 3.853 13 H 0.075 0.925 14 C -0.114 4.114 15 C -0.025 4.025 16 C 0.182 3.818 17 N -0.342 5.342 18 N -0.342 5.342 19 C 0.186 3.814 20 C 0.152 3.848 21 N -0.686 5.686 22 C 0.079 3.921 23 C -0.138 4.138 24 C -0.155 4.155 25 N -0.451 5.451 26 C 0.105 3.895 27 C -0.132 4.132 28 H 0.043 0.957 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.149 0.851 32 H 0.332 0.668 33 H 0.414 0.586 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.066 0.934 39 H 0.116 0.884 40 H 0.344 0.656 41 H 0.052 0.948 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.055 0.945 45 H 0.052 0.948 46 H 0.073 0.927 47 H 0.058 0.942 48 H 0.106 0.894 49 H 0.132 0.868 50 H 0.078 0.922 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.467 -3.035 -11.619 12.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.107 4.107 3 C -0.269 4.269 4 N -0.232 5.232 5 Si 0.794 3.206 6 H -0.130 1.130 7 H -0.184 1.184 8 H -0.192 1.192 9 C 0.298 3.702 10 O -0.418 6.418 11 N -0.377 5.377 12 C 0.042 3.958 13 H 0.093 0.907 14 C -0.154 4.154 15 C -0.066 4.066 16 C -0.087 4.087 17 N -0.181 5.181 18 N -0.183 5.183 19 C -0.083 4.083 20 C 0.021 3.979 21 N -0.320 5.320 22 C -0.029 4.029 23 C -0.196 4.196 24 C -0.212 4.212 25 N -0.140 5.140 26 C -0.016 4.016 27 C -0.170 4.170 28 H 0.063 0.937 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.166 0.834 32 H 0.149 0.851 33 H 0.251 0.749 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.084 0.916 39 H 0.134 0.866 40 H 0.162 0.838 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.092 0.908 47 H 0.077 0.923 48 H 0.124 0.876 49 H 0.150 0.850 50 H 0.097 0.903 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.556 -2.401 -10.079 10.478 hybrid contribution -0.011 0.256 -0.356 0.438 sum 1.545 -2.145 -10.435 10.765 Atomic orbital electron populations 1.21734 0.90054 1.04465 1.03391 1.20900 0.99116 0.92411 0.98275 1.30408 0.94048 0.99572 1.02845 1.68506 1.07408 1.14680 1.32612 0.85046 0.80276 0.79705 0.75614 1.13013 1.18378 1.19213 1.20858 0.79854 0.81730 0.87788 1.90780 1.37989 1.65629 1.47395 1.46112 1.54632 1.11806 1.25163 1.20207 0.98100 0.92551 0.84925 0.90655 1.21575 0.99003 1.02164 0.92613 1.20530 1.03798 0.82742 0.99491 1.25079 0.96094 0.96364 0.91204 1.74159 1.22277 0.98785 1.22863 1.74443 1.18740 1.09403 1.15687 1.24857 0.97843 0.89792 0.95847 1.20313 0.92170 0.86262 0.99187 1.60623 1.32008 1.29841 1.09480 1.21583 0.97629 0.87748 0.95984 1.21799 0.99773 1.02000 0.96065 1.21964 1.00334 1.00697 0.98241 1.46190 1.35579 1.05242 1.27033 1.22700 0.91162 1.03874 0.83886 1.21885 1.02028 0.92981 1.00118 0.93733 0.89237 0.89174 0.83357 0.85130 0.74939 0.91842 0.90947 0.88193 0.88041 0.91573 0.86588 0.83814 0.92979 0.91721 0.92021 0.92570 0.92921 0.90848 0.92266 0.87561 0.84969 0.90311 0.85687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 1.18 9.02 71.98 0.65 1.83 16 2 C -0.09 0.47 2.65 -12.29 -0.03 0.44 16 3 C -0.02 0.02 4.75 88.67 0.42 0.44 16 4 N -0.62 -3.52 11.22 24.11 0.27 -3.25 16 5 Si 0.98 -4.63 29.29 68.60 2.01 -2.62 16 6 H -0.21 1.76 7.11 99.48 0.71 2.47 16 7 H -0.26 0.52 7.11 99.48 0.71 1.23 16 8 H -0.27 0.24 7.11 99.48 0.71 0.95 16 9 C 0.51 -0.02 6.85 87.66 0.60 0.58 16 10 O -0.54 -5.41 13.88 -3.03 -0.04 -5.45 16 11 N -0.72 4.75 4.79 -449.04 -2.15 2.60 16 12 C 0.15 -0.73 1.95 43.63 0.08 -0.65 16 13 H 0.08 -0.10 6.90 -2.39 -0.02 -0.12 16 14 C -0.11 0.08 5.15 30.15 0.16 0.24 16 15 C -0.03 -0.04 6.02 30.45 0.18 0.14 16 16 C 0.18 1.17 7.03 138.83 0.98 2.15 16 17 N -0.34 -5.06 12.23 -50.00 -0.61 -5.67 16 18 N -0.34 -4.69 12.24 -50.44 -0.62 -5.31 16 19 C 0.19 0.88 7.59 138.12 1.05 1.93 16 20 C 0.15 -0.32 5.70 85.56 0.49 0.17 16 21 N -0.69 1.15 6.30 -495.56 -3.12 -1.97 16 22 C 0.08 -0.32 3.22 44.91 0.14 -0.18 16 23 C -0.14 0.81 9.41 71.98 0.68 1.48 16 24 C -0.15 0.53 9.18 71.98 0.66 1.19 16 25 N -0.45 -0.46 2.72 -500.63 -1.36 -1.82 16 26 C 0.11 -0.81 6.46 86.40 0.56 -0.25 16 27 C -0.13 1.35 5.09 30.11 0.15 1.50 16 28 H 0.04 -0.14 8.14 -2.39 -0.02 -0.16 16 29 H 0.09 -1.04 7.95 -2.38 -0.02 -1.06 16 30 H 0.09 -1.15 7.57 -2.38 -0.02 -1.17 16 31 H 0.15 -1.94 7.85 -2.39 -0.02 -1.96 16 32 H 0.33 1.04 8.23 -92.71 -0.76 0.28 16 33 H 0.41 -5.31 8.03 -92.71 -0.74 -6.05 16 34 H 0.06 0.03 7.91 -2.39 -0.02 0.01 16 35 H 0.07 0.22 7.91 -2.39 -0.02 0.20 16 36 H 0.10 0.29 8.14 -2.38 -0.02 0.27 16 37 H 0.10 -0.07 7.89 -2.39 -0.02 -0.09 16 38 H 0.07 -0.09 8.06 -2.39 -0.02 -0.11 16 39 H 0.12 -0.87 6.76 -2.38 -0.02 -0.89 16 40 H 0.34 0.44 8.34 -89.69 -0.75 -0.31 16 41 H 0.05 -0.23 7.80 -2.38 -0.02 -0.25 16 42 H 0.06 -0.41 8.14 -2.39 -0.02 -0.43 16 43 H 0.06 -0.47 7.45 -2.39 -0.02 -0.49 16 44 H 0.06 -0.22 8.14 -2.39 -0.02 -0.24 16 45 H 0.05 -0.13 8.12 -2.39 -0.02 -0.15 16 46 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 47 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 48 H 0.11 -0.86 7.87 -2.38 -0.02 -0.88 16 49 H 0.13 -1.53 7.17 -2.39 -0.02 -1.54 16 50 H 0.08 -0.71 8.08 -2.39 -0.02 -0.73 16 51 H 0.13 -1.86 8.12 -2.39 -0.02 -1.87 16 Total: 0.00 -26.69 400.94 0.60 -26.09 By element: Atomic # 1 Polarization: -13.05 SS G_CDS: -0.55 Total: -13.60 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 6.77 Total: 11.00 kcal Atomic # 7 Polarization: -7.83 SS G_CDS: -7.59 Total: -15.42 kcal Atomic # 8 Polarization: -5.41 SS G_CDS: -0.04 Total: -5.45 kcal Atomic # 14 Polarization: -4.63 SS G_CDS: 2.01 Total: -2.62 kcal Total: -26.69 0.60 -26.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127964616.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.531 kcal (2) G-P(sol) polarization free energy of solvation -26.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.35 seconds