Wall clock time and date at job start Wed Apr 1 2020 01:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47359 * 2 1 4 4 C 1.53007 * 109.47228 * 119.99875 * 2 1 3 5 5 C 1.52994 * 109.46957 * 65.66311 * 4 2 1 6 6 H 1.08999 * 109.47240 * 305.76387 * 5 4 2 7 7 C 1.52996 * 109.47072 * 65.76396 * 5 4 2 8 8 C 1.50701 * 109.46901 * 185.76312 * 5 4 2 9 9 O 1.21281 * 120.00229 * 0.02562 * 8 5 4 10 10 N 1.34775 * 120.00070 * 179.97438 * 8 5 4 11 11 C 1.46495 * 120.00234 * 180.02562 * 10 8 5 12 12 H 1.09002 * 110.88980 * 31.11969 * 11 10 8 13 13 C 1.55128 * 111.22619 * 267.20668 * 11 10 8 14 14 N 1.47423 * 104.72747 * 279.17822 * 13 11 10 15 15 C 1.36935 * 125.65400 * 155.81292 * 14 13 11 16 16 H 1.08000 * 120.00315 * 179.69367 * 15 14 13 17 17 C 1.38811 * 119.99901 * 359.42058 * 15 14 13 18 18 N 1.31626 * 119.99808 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00153 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46928 * 60.00131 * 19 17 15 21 21 H 1.48501 * 109.46959 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47128 * 299.99752 * 19 17 15 23 23 C 1.47027 * 108.69784 * 335.55047 * 14 13 11 24 24 C 1.54323 * 107.27040 * 1.28656 * 23 14 13 25 25 H 1.08999 * 110.71904 * 263.82778 * 24 23 14 26 26 N 1.46507 * 110.71437 * 140.55575 * 24 23 14 27 27 C 1.35309 * 125.87221 * 326.16833 * 26 24 23 28 28 C 1.35349 * 106.17366 * 179.90904 * 27 26 24 29 29 N 1.33767 * 106.49958 * 0.34914 * 28 27 26 30 30 N 1.28636 * 108.88622 * 359.77760 * 29 28 27 31 31 H 1.08998 * 109.47037 * 300.00257 * 1 2 3 32 32 H 1.08997 * 109.46934 * 59.99624 * 1 2 3 33 33 H 1.08995 * 109.47171 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47037 * 239.99743 * 2 1 3 35 35 H 1.09000 * 109.46830 * 179.15830 * 3 2 1 36 36 H 1.08997 * 109.46914 * 299.15640 * 3 2 1 37 37 H 1.08997 * 109.46816 * 59.15495 * 3 2 1 38 38 H 1.08996 * 109.46738 * 305.66157 * 4 2 1 39 39 H 1.08997 * 109.47394 * 185.66519 * 4 2 1 40 40 H 1.08997 * 109.47372 * 293.87377 * 7 5 4 41 41 H 1.09005 * 109.47437 * 53.87669 * 7 5 4 42 42 H 1.09008 * 109.47014 * 173.87206 * 7 5 4 43 43 H 0.97006 * 120.00121 * 0.02562 * 10 8 5 44 44 H 1.09004 * 110.50109 * 160.33074 * 13 11 10 45 45 H 1.09006 * 110.34221 * 37.94128 * 13 11 10 46 46 H 0.96997 * 119.99765 * 180.02562 * 18 17 15 47 47 H 1.09008 * 109.88035 * 120.70632 * 23 14 13 48 48 H 1.09000 * 109.88235 * 241.86361 * 23 14 13 49 49 H 1.07999 * 126.90913 * 0.02562 * 27 26 24 50 50 H 1.07999 * 126.75157 * 180.12829 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6496 -2.1989 1.1802 6 1 0.5740 -2.2837 1.0252 7 6 2.3866 -2.8673 0.0179 8 6 2.0262 -2.8789 2.4712 9 8 2.5544 -2.2440 3.3594 10 7 1.7751 -4.1923 2.6393 11 6 2.1407 -4.8532 3.8946 12 1 2.0776 -4.1587 4.7323 13 6 3.5544 -5.4857 3.8053 14 7 3.3488 -6.7652 3.1025 15 6 4.2991 -7.4457 2.3891 16 1 4.0491 -8.3821 1.9127 17 6 5.5824 -6.9291 2.2736 18 7 5.8855 -5.7850 2.8494 19 14 6.8791 -7.8578 1.3011 20 1 6.4268 -8.0126 -0.1049 21 1 8.1559 -7.1000 1.3293 22 1 7.0852 -9.1985 1.9054 23 6 1.9559 -7.1928 3.2996 24 6 1.2575 -6.1047 4.1421 25 1 1.2585 -6.3747 5.1981 26 7 -0.1089 -5.8773 3.6649 27 6 -0.5238 -5.9589 2.3796 28 6 -1.8478 -5.6780 2.3923 29 7 -2.1722 -5.4339 3.6668 30 7 -1.1199 -5.5601 4.3958 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 3.1300 1.4425 0.0151 36 1 1.6892 1.9519 -0.8974 37 1 1.6644 1.9607 0.8823 38 1 1.5963 -0.2692 2.1363 39 1 3.1253 -0.6343 1.3015 40 1 2.0334 -2.4493 -0.9248 41 1 3.4574 -2.6888 0.1159 42 1 2.1940 -3.9401 0.0344 43 1 1.3523 -4.7001 1.9291 44 1 3.9577 -5.6613 4.8026 45 1 4.2222 -4.8417 3.2331 46 1 6.7820 -5.4238 2.7684 47 1 1.4583 -7.2910 2.3347 48 1 1.9319 -8.1447 3.8299 49 1 0.0797 -6.2014 1.5174 50 1 -2.5110 -5.6522 1.5403 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129347888.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:32:56 Heat of formation + Delta-G solvation = 79.560048 kcal Electronic energy + Delta-G solvation = -30978.874544 eV Core-core repulsion = 27043.996638 eV Total energy + Delta-G solvation = -3934.877906 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.15661 -39.91494 -38.14755 -36.67898 -34.21709 -33.54525 -32.56413 -31.69369 -30.95235 -28.93296 -27.61628 -27.27789 -26.58327 -25.05402 -23.90821 -22.60692 -22.31987 -20.84538 -20.26613 -19.94201 -19.28239 -17.77157 -17.11396 -16.83835 -16.13590 -15.61536 -15.37121 -15.06502 -14.85406 -14.67449 -14.34929 -14.01929 -13.90706 -13.54317 -13.38017 -13.34085 -13.04494 -12.56949 -12.35803 -12.22816 -12.00500 -11.88834 -11.71520 -11.57160 -11.49218 -11.47103 -11.24900 -11.21496 -10.97164 -10.82139 -10.71993 -10.55323 -10.52757 -10.49813 -10.26845 -9.98522 -9.79603 -9.39296 -9.27074 -8.94038 -8.60630 -7.14214 -5.87024 -3.33836 1.74354 2.42604 2.70118 2.99725 3.27246 3.32399 3.34480 3.45913 4.26479 4.49986 4.60401 4.69517 4.72027 4.72993 4.84045 5.04703 5.05010 5.15951 5.18211 5.25365 5.27463 5.31241 5.33492 5.40500 5.53235 5.57073 5.69902 5.71853 5.75599 5.87948 5.89803 5.93217 5.96528 5.98929 6.02802 6.07707 6.14962 6.15704 6.20750 6.26032 6.38664 6.43340 6.55349 6.82547 7.15859 7.34870 7.60370 7.80184 8.09667 8.57319 8.65736 8.94334 9.55130 10.13033 11.15496 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008055 B = 0.004999 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3475.205448 B = 5599.283192 C = 8096.216588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.099 4.099 3 C -0.146 4.146 4 C -0.094 4.094 5 C -0.109 4.109 6 H 0.093 0.907 7 C -0.143 4.143 8 C 0.522 3.478 9 O -0.540 6.540 10 N -0.708 5.708 11 C 0.113 3.887 12 H 0.102 0.898 13 C 0.143 3.857 14 N -0.595 5.595 15 C -0.236 4.236 16 H 0.080 0.920 17 C 0.000 4.000 18 N -0.914 5.914 19 Si 0.917 3.083 20 H -0.284 1.284 21 H -0.289 1.289 22 H -0.284 1.284 23 C 0.130 3.870 24 C 0.114 3.886 25 H 0.131 0.869 26 N -0.265 5.265 27 C -0.051 4.051 28 C -0.056 4.056 29 N -0.280 5.280 30 N -0.085 5.085 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.394 0.606 44 H 0.031 0.969 45 H 0.127 0.873 46 H 0.257 0.743 47 H 0.037 0.963 48 H 0.043 0.957 49 H 0.187 0.813 50 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.359 6.240 -6.813 13.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.118 4.118 3 C -0.204 4.204 4 C -0.132 4.132 5 C -0.131 4.131 6 H 0.111 0.889 7 C -0.201 4.201 8 C 0.308 3.692 9 O -0.416 6.416 10 N -0.360 5.360 11 C 0.005 3.995 12 H 0.120 0.880 13 C 0.017 3.983 14 N -0.322 5.322 15 C -0.364 4.364 16 H 0.098 0.902 17 C -0.197 4.197 18 N -0.561 5.561 19 Si 0.747 3.253 20 H -0.210 1.210 21 H -0.214 1.214 22 H -0.210 1.210 23 C 0.003 3.997 24 C 0.011 3.989 25 H 0.148 0.852 26 N -0.058 5.058 27 C -0.203 4.203 28 C -0.214 4.214 29 N -0.146 5.146 30 N -0.065 5.065 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.229 0.771 44 H 0.049 0.951 45 H 0.145 0.855 46 H 0.068 0.932 47 H 0.054 0.946 48 H 0.061 0.939 49 H 0.204 0.796 50 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -10.221 7.020 -4.762 13.282 hybrid contribution 0.974 -1.208 -1.853 2.417 sum -9.247 5.812 -6.615 12.769 Atomic orbital electron populations 1.21904 0.95478 1.01738 1.01544 1.21186 0.95711 0.96214 0.98642 1.21822 1.01119 0.95969 1.01462 1.21454 1.01887 0.92155 0.97664 1.21339 1.01783 0.96574 0.93361 0.88908 1.21807 1.01265 1.00417 0.96581 1.20543 0.77985 0.81599 0.89080 1.90680 1.42479 1.64674 1.43791 1.45736 1.62745 1.09631 1.17850 1.22929 0.96942 0.92034 0.87593 0.88020 1.22567 0.90293 0.88013 0.97413 1.44366 1.04638 1.22757 1.60426 1.18942 0.89363 1.02992 1.25086 0.90201 1.24810 0.97370 0.97334 1.00180 1.69713 1.20066 1.19094 1.47202 0.86129 0.80824 0.78781 0.79568 1.21006 1.21422 1.21010 1.21572 0.88065 0.93827 0.96271 1.23393 0.74479 0.99203 1.01802 0.85161 1.47454 1.10035 1.42612 1.05746 1.23562 0.97279 1.09687 0.89768 1.23519 0.94150 1.07076 0.96636 1.75073 1.19283 1.17655 1.02540 1.78296 0.89865 1.17663 1.20651 0.92737 0.92942 0.92532 0.90886 0.92610 0.92937 0.92742 0.91268 0.91121 0.91673 0.91597 0.92097 0.77076 0.95078 0.85532 0.93194 0.94569 0.93944 0.79609 0.79665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.97 37.16 0.33 -1.01 16 2 C -0.10 -0.98 2.80 -90.61 -0.25 -1.23 16 3 C -0.15 -1.35 9.19 37.16 0.34 -1.01 16 4 C -0.09 -1.18 3.50 -26.73 -0.09 -1.27 16 5 C -0.11 -1.41 2.60 -91.78 -0.24 -1.65 16 6 H 0.09 1.05 6.34 -51.93 -0.33 0.72 16 7 C -0.14 -1.74 8.77 37.16 0.33 -1.41 16 8 C 0.52 8.90 7.15 -10.99 -0.08 8.82 16 9 O -0.54 -11.21 15.54 5.56 0.09 -11.12 16 10 N -0.71 -11.52 4.52 -51.62 -0.23 -11.76 16 11 C 0.11 2.00 3.29 -65.67 -0.22 1.78 16 12 H 0.10 1.89 7.54 -51.93 -0.39 1.50 16 13 C 0.14 3.12 5.63 -2.41 -0.01 3.11 16 14 N -0.59 -13.01 3.39 -169.93 -0.58 -13.58 16 15 C -0.24 -5.83 10.27 -15.06 -0.15 -5.98 16 16 H 0.08 1.90 7.83 -52.49 -0.41 1.49 16 17 C 0.00 0.00 5.49 -17.43 -0.10 -0.10 16 18 N -0.91 -24.72 10.08 55.49 0.56 -24.16 16 19 Si 0.92 20.47 29.55 -169.99 -5.02 15.45 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 C 0.13 2.24 6.85 -3.06 -0.02 2.22 16 24 C 0.11 1.79 3.85 -66.09 -0.25 1.53 16 25 H 0.13 1.91 8.14 -51.93 -0.42 1.49 16 26 N -0.27 -3.95 3.14 -52.98 -0.17 -4.12 16 27 C -0.05 -0.65 8.48 -17.05 -0.14 -0.79 16 28 C -0.06 -0.70 12.05 -17.74 -0.21 -0.91 16 29 N -0.28 -4.50 12.41 30.23 0.38 -4.13 16 30 N -0.09 -1.43 13.17 60.35 0.79 -0.64 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.50 6.47 -51.93 -0.34 0.16 16 34 H 0.07 0.69 6.48 -51.93 -0.34 0.35 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.96 7.93 -51.93 -0.41 0.54 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.06 0.63 6.77 -51.93 -0.35 0.28 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.06 0.75 7.40 -51.92 -0.38 0.37 16 43 H 0.39 5.70 5.41 -40.82 -0.22 5.48 16 44 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.13 3.26 5.84 -51.93 -0.30 2.95 16 46 H 0.26 6.89 8.31 -40.82 -0.34 6.56 16 47 H 0.04 0.58 6.03 -51.92 -0.31 0.27 16 48 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.19 1.91 6.48 -52.49 -0.34 1.57 16 50 H 0.19 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 390.31 15.07 5.88 5.88 Total: -1.00 -30.14 390.31 -6.99 -37.13 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -7.91 Total: 8.96 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -0.78 Total: 2.08 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: 0.75 Total: -58.38 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.14 -6.99 -37.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129347888.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.692 kcal (2) G-P(sol) polarization free energy of solvation -30.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds