Wall clock time and date at job start Wed Apr 1 2020 01:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47359 * 2 1 4 4 C 1.53007 * 109.47228 * 119.99875 * 2 1 3 5 5 C 1.52994 * 109.46957 * 65.66311 * 4 2 1 6 6 H 1.08999 * 109.47240 * 305.76387 * 5 4 2 7 7 C 1.52996 * 109.47072 * 65.76396 * 5 4 2 8 8 C 1.50701 * 109.46901 * 185.76312 * 5 4 2 9 9 O 1.21281 * 120.00229 * 0.02562 * 8 5 4 10 10 N 1.34775 * 120.00070 * 179.97438 * 8 5 4 11 11 C 1.46495 * 120.00234 * 180.02562 * 10 8 5 12 12 H 1.09002 * 110.88980 * 31.11969 * 11 10 8 13 13 C 1.55128 * 111.22619 * 267.20668 * 11 10 8 14 14 N 1.47423 * 104.72747 * 279.17822 * 13 11 10 15 15 C 1.36935 * 125.65400 * 155.81292 * 14 13 11 16 16 H 1.08000 * 120.00315 * 179.69367 * 15 14 13 17 17 C 1.38811 * 119.99901 * 359.42058 * 15 14 13 18 18 N 1.31626 * 119.99808 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00153 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46928 * 60.00131 * 19 17 15 21 21 H 1.48501 * 109.46959 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47128 * 299.99752 * 19 17 15 23 23 C 1.47027 * 108.69784 * 335.55047 * 14 13 11 24 24 C 1.54323 * 107.27040 * 1.28656 * 23 14 13 25 25 H 1.08999 * 110.71904 * 263.82778 * 24 23 14 26 26 N 1.46507 * 110.71437 * 140.55575 * 24 23 14 27 27 C 1.35309 * 125.87221 * 326.16833 * 26 24 23 28 28 C 1.35349 * 106.17366 * 179.90904 * 27 26 24 29 29 N 1.33767 * 106.49958 * 0.34914 * 28 27 26 30 30 N 1.28636 * 108.88622 * 359.77760 * 29 28 27 31 31 H 1.08998 * 109.47037 * 300.00257 * 1 2 3 32 32 H 1.08997 * 109.46934 * 59.99624 * 1 2 3 33 33 H 1.08995 * 109.47171 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47037 * 239.99743 * 2 1 3 35 35 H 1.09000 * 109.46830 * 179.15830 * 3 2 1 36 36 H 1.08997 * 109.46914 * 299.15640 * 3 2 1 37 37 H 1.08997 * 109.46816 * 59.15495 * 3 2 1 38 38 H 1.08996 * 109.46738 * 305.66157 * 4 2 1 39 39 H 1.08997 * 109.47394 * 185.66519 * 4 2 1 40 40 H 1.08997 * 109.47372 * 293.87377 * 7 5 4 41 41 H 1.09005 * 109.47437 * 53.87669 * 7 5 4 42 42 H 1.09008 * 109.47014 * 173.87206 * 7 5 4 43 43 H 0.97006 * 120.00121 * 0.02562 * 10 8 5 44 44 H 1.09004 * 110.50109 * 160.33074 * 13 11 10 45 45 H 1.09006 * 110.34221 * 37.94128 * 13 11 10 46 46 H 0.96997 * 119.99765 * 180.02562 * 18 17 15 47 47 H 1.09008 * 109.88035 * 120.70632 * 23 14 13 48 48 H 1.09000 * 109.88235 * 241.86361 * 23 14 13 49 49 H 1.07999 * 126.90913 * 0.02562 * 27 26 24 50 50 H 1.07999 * 126.75157 * 180.12829 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6496 -2.1989 1.1802 6 1 0.5740 -2.2837 1.0252 7 6 2.3866 -2.8673 0.0179 8 6 2.0262 -2.8789 2.4712 9 8 2.5544 -2.2440 3.3594 10 7 1.7751 -4.1923 2.6393 11 6 2.1407 -4.8532 3.8946 12 1 2.0776 -4.1587 4.7323 13 6 3.5544 -5.4857 3.8053 14 7 3.3488 -6.7652 3.1025 15 6 4.2991 -7.4457 2.3891 16 1 4.0491 -8.3821 1.9127 17 6 5.5824 -6.9291 2.2736 18 7 5.8855 -5.7850 2.8494 19 14 6.8791 -7.8578 1.3011 20 1 6.4268 -8.0126 -0.1049 21 1 8.1559 -7.1000 1.3293 22 1 7.0852 -9.1985 1.9054 23 6 1.9559 -7.1928 3.2996 24 6 1.2575 -6.1047 4.1421 25 1 1.2585 -6.3747 5.1981 26 7 -0.1089 -5.8773 3.6649 27 6 -0.5238 -5.9589 2.3796 28 6 -1.8478 -5.6780 2.3923 29 7 -2.1722 -5.4339 3.6668 30 7 -1.1199 -5.5601 4.3958 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 3.1300 1.4425 0.0151 36 1 1.6892 1.9519 -0.8974 37 1 1.6644 1.9607 0.8823 38 1 1.5963 -0.2692 2.1363 39 1 3.1253 -0.6343 1.3015 40 1 2.0334 -2.4493 -0.9248 41 1 3.4574 -2.6888 0.1159 42 1 2.1940 -3.9401 0.0344 43 1 1.3523 -4.7001 1.9291 44 1 3.9577 -5.6613 4.8026 45 1 4.2222 -4.8417 3.2331 46 1 6.7820 -5.4238 2.7684 47 1 1.4583 -7.2910 2.3347 48 1 1.9319 -8.1447 3.8299 49 1 0.0797 -6.2014 1.5174 50 1 -2.5110 -5.6522 1.5403 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129347888.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:32:55 Heat of formation + Delta-G solvation = 60.721332 kcal Electronic energy + Delta-G solvation = -30979.691452 eV Core-core repulsion = 27043.996638 eV Total energy + Delta-G solvation = -3935.694814 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.28511 -41.28478 -39.54682 -37.74413 -35.80874 -34.87768 -33.73020 -33.23759 -32.03467 -30.50733 -29.11717 -27.98724 -27.56946 -26.76428 -25.09319 -23.82356 -23.52871 -22.31125 -21.56158 -21.25063 -20.31404 -19.24728 -18.48925 -18.25533 -17.37802 -16.87700 -16.65225 -16.47996 -16.18074 -15.84514 -15.71749 -15.30364 -15.05817 -14.77120 -14.65039 -14.49892 -14.05882 -13.98561 -13.69926 -13.26306 -13.16152 -13.14151 -13.08486 -12.83086 -12.77746 -12.74622 -12.62896 -12.37036 -12.23718 -12.17863 -12.10158 -11.93590 -11.77637 -11.61500 -11.43705 -11.37830 -11.07429 -10.86183 -10.70538 -10.35693 -10.09714 -8.96578 -7.79481 -5.26983 0.63319 1.22196 1.50286 1.51295 1.57976 1.62765 1.65705 2.15035 2.47557 3.19374 3.27140 3.36140 3.49454 3.62795 3.71183 3.74553 3.84387 3.92057 4.16083 4.18834 4.20402 4.24330 4.32843 4.34210 4.40504 4.52015 4.66212 4.71869 4.72563 4.81281 4.83671 4.85293 4.92082 4.98104 5.06452 5.07087 5.13901 5.21237 5.27085 5.30910 5.34012 5.44687 5.49441 5.51148 5.57510 5.64143 5.71648 6.22668 6.47162 7.01793 7.22688 7.54070 7.69417 8.28121 9.20869 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008055 B = 0.004999 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3475.205448 B = 5599.283192 C = 8096.216588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.090 4.090 5 C -0.099 4.099 6 H 0.121 0.879 7 C -0.138 4.138 8 C 0.511 3.489 9 O -0.585 6.585 10 N -0.699 5.699 11 C 0.124 3.876 12 H 0.088 0.912 13 C 0.152 3.848 14 N -0.608 5.608 15 C -0.234 4.234 16 H 0.092 0.908 17 C -0.056 4.056 18 N -0.945 5.945 19 Si 0.975 3.025 20 H -0.272 1.272 21 H -0.303 1.303 22 H -0.280 1.280 23 C 0.132 3.868 24 C 0.133 3.867 25 H 0.138 0.862 26 N -0.269 5.269 27 C -0.048 4.048 28 C -0.046 4.046 29 N -0.304 5.304 30 N -0.119 5.119 31 H 0.046 0.954 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.048 0.952 36 H 0.069 0.931 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.046 0.954 40 H 0.098 0.902 41 H 0.039 0.961 42 H 0.061 0.939 43 H 0.405 0.595 44 H 0.004 0.996 45 H 0.088 0.912 46 H 0.245 0.755 47 H 0.061 0.939 48 H 0.052 0.948 49 H 0.214 0.786 50 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.819 5.294 -9.622 16.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 C -0.205 4.205 4 C -0.128 4.128 5 C -0.120 4.120 6 H 0.138 0.862 7 C -0.195 4.195 8 C 0.299 3.701 9 O -0.465 6.465 10 N -0.351 5.351 11 C 0.016 3.984 12 H 0.106 0.894 13 C 0.026 3.974 14 N -0.335 5.335 15 C -0.363 4.363 16 H 0.110 0.890 17 C -0.249 4.249 18 N -0.594 5.594 19 Si 0.804 3.196 20 H -0.198 1.198 21 H -0.229 1.229 22 H -0.206 1.206 23 C 0.006 3.994 24 C 0.030 3.970 25 H 0.156 0.844 26 N -0.062 5.062 27 C -0.199 4.199 28 C -0.203 4.203 29 N -0.169 5.169 30 N -0.098 5.098 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.117 0.883 41 H 0.058 0.942 42 H 0.080 0.920 43 H 0.243 0.757 44 H 0.021 0.979 45 H 0.106 0.894 46 H 0.055 0.945 47 H 0.079 0.921 48 H 0.070 0.930 49 H 0.230 0.770 50 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -12.746 6.038 -7.587 16.015 hybrid contribution 1.675 -0.929 -0.982 2.153 sum -11.071 5.108 -8.569 14.903 Atomic orbital electron populations 1.21900 0.94299 1.02294 1.02032 1.21159 0.96591 0.96175 0.97187 1.21836 1.00744 0.95791 1.02115 1.21414 1.00353 0.92394 0.98667 1.21376 1.03357 0.96106 0.91136 0.86156 1.21793 0.99579 1.00587 0.97556 1.21451 0.76938 0.81641 0.90035 1.90659 1.44476 1.65658 1.45678 1.45659 1.62255 1.09595 1.17573 1.22500 0.95335 0.92488 0.88090 0.89384 1.22151 0.92017 0.88039 0.95220 1.44467 1.06299 1.22708 1.60048 1.19342 0.89791 1.03073 1.24058 0.88978 1.25538 0.99440 0.98174 1.01746 1.69995 1.19501 1.20747 1.49169 0.85204 0.78072 0.77439 0.78895 1.19806 1.22943 1.20578 1.21677 0.85719 0.94262 0.97726 1.23031 0.74821 0.96998 1.02184 0.84400 1.47333 1.09223 1.43048 1.06635 1.24101 0.97811 1.08620 0.89401 1.24196 0.94610 1.05116 0.96411 1.75056 1.19348 1.18257 1.04246 1.78321 0.90444 1.19477 1.21561 0.93464 0.91300 0.91909 0.89757 0.93299 0.91173 0.93228 0.93040 0.93508 0.88333 0.94194 0.92000 0.75716 0.97852 0.89432 0.94480 0.92083 0.93039 0.76963 0.75743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 8.97 71.98 0.65 -1.59 16 2 C -0.09 -1.66 2.80 -10.79 -0.03 -1.69 16 3 C -0.15 -2.53 9.19 71.98 0.66 -1.87 16 4 C -0.09 -2.27 3.50 30.59 0.11 -2.16 16 5 C -0.10 -2.44 2.60 -11.54 -0.03 -2.47 16 6 H 0.12 2.35 6.34 -2.39 -0.02 2.33 16 7 C -0.14 -3.09 8.77 71.98 0.63 -2.46 16 8 C 0.51 17.64 7.15 87.66 0.63 18.27 16 9 O -0.58 -25.54 15.54 -3.03 -0.05 -25.59 16 10 N -0.70 -22.41 4.52 -435.61 -1.97 -24.38 16 11 C 0.12 4.48 3.29 46.46 0.15 4.63 16 12 H 0.09 3.44 7.54 -2.39 -0.02 3.42 16 13 C 0.15 6.92 5.63 86.93 0.49 7.41 16 14 N -0.61 -26.41 3.39 -691.52 -2.35 -28.76 16 15 C -0.23 -11.40 10.27 84.03 0.86 -10.54 16 16 H 0.09 4.18 7.83 -2.91 -0.02 4.16 16 17 C -0.06 -2.88 5.49 84.86 0.47 -2.41 16 18 N -0.95 -53.22 10.08 21.65 0.22 -53.00 16 19 Si 0.98 42.27 29.55 68.60 2.03 44.30 16 20 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 21 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 22 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 23 C 0.13 4.29 6.85 86.73 0.59 4.88 16 24 C 0.13 4.02 3.85 46.18 0.18 4.20 16 25 H 0.14 3.96 8.14 -2.39 -0.02 3.94 16 26 N -0.27 -7.44 3.14 -321.54 -1.01 -8.45 16 27 C -0.05 -1.03 8.48 83.49 0.71 -0.33 16 28 C -0.05 -0.96 12.05 83.73 1.01 0.05 16 29 N -0.30 -9.05 12.41 -58.26 -0.72 -9.78 16 30 N -0.12 -3.83 13.17 37.02 0.49 -3.34 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.06 0.87 6.47 -2.39 -0.02 0.85 16 34 H 0.08 1.34 6.48 -2.39 -0.02 1.32 16 35 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.05 1.46 7.93 -2.39 -0.02 1.44 16 39 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.10 1.57 6.77 -2.39 -0.02 1.55 16 41 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 42 H 0.06 1.38 7.40 -2.38 -0.02 1.36 16 43 H 0.41 10.84 5.41 -92.70 -0.50 10.34 16 44 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 45 H 0.09 4.76 5.84 -2.38 -0.01 4.75 16 46 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 47 H 0.06 1.72 6.03 -2.38 -0.01 1.71 16 48 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 49 H 0.21 3.30 6.48 -2.91 -0.02 3.28 16 50 H 0.23 2.70 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -69.11 390.31 4.15 -64.96 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: 0.44 Total: 30.13 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: 7.07 Total: 13.91 kcal Atomic # 7 Polarization: -122.36 SS G_CDS: -5.34 Total: -127.71 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.05 Total: -25.59 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -69.11 4.15 -64.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129347888.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.677 kcal (2) G-P(sol) polarization free energy of solvation -69.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds