Wall clock time and date at job start Wed Apr 1 2020 01:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47141 * 2 1 4 4 C 1.52997 * 109.46967 * 120.00489 * 2 1 3 5 5 C 1.53000 * 109.47044 * 174.49260 * 4 2 1 6 6 H 1.08996 * 109.47484 * 53.64666 * 5 4 2 7 7 C 1.53004 * 109.47048 * 173.64812 * 5 4 2 8 8 C 1.50699 * 109.47054 * 293.64678 * 5 4 2 9 9 O 1.21287 * 119.99814 * 0.02562 * 8 5 4 10 10 N 1.34774 * 120.00323 * 180.02562 * 8 5 4 11 11 C 1.47423 * 125.64622 * 359.95388 * 10 8 5 12 12 C 1.54910 * 104.83295 * 204.16552 * 11 10 8 13 13 H 1.09003 * 111.00309 * 81.07053 * 12 11 10 14 14 N 1.46503 * 111.00524 * 204.91823 * 12 11 10 15 15 C 1.36937 * 120.00411 * 267.20152 * 14 12 11 16 16 H 1.08007 * 119.99593 * 359.97438 * 15 14 12 17 17 C 1.38801 * 120.00433 * 179.97438 * 15 14 12 18 18 N 1.31622 * 119.99965 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00290 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46935 * 60.00053 * 19 17 15 21 21 H 1.48497 * 109.47142 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47027 * 300.00224 * 19 17 15 23 23 C 1.55152 * 101.58203 * 322.99232 * 12 11 10 24 24 H 1.09001 * 110.87185 * 153.93212 * 23 12 11 25 25 N 1.46492 * 110.72339 * 277.13873 * 23 12 11 26 26 C 1.35315 * 125.87250 * 80.27314 * 25 23 12 27 27 C 1.35350 * 106.17739 * 180.18964 * 26 25 23 28 28 N 1.33768 * 106.49882 * 359.58925 * 27 26 25 29 29 N 1.28644 * 108.88408 * 0.26037 * 28 27 26 30 30 C 1.47026 * 125.65038 * 180.02562 * 10 8 5 31 31 H 1.09000 * 109.47145 * 300.00066 * 1 2 3 32 32 H 1.09007 * 109.47452 * 59.99660 * 1 2 3 33 33 H 1.09001 * 109.47337 * 179.97438 * 1 2 3 34 34 H 1.09007 * 109.46797 * 240.00486 * 2 1 3 35 35 H 1.08998 * 109.47055 * 185.94395 * 3 2 1 36 36 H 1.09001 * 109.47175 * 305.94459 * 3 2 1 37 37 H 1.08998 * 109.46813 * 65.94089 * 3 2 1 38 38 H 1.08998 * 109.47420 * 54.48611 * 4 2 1 39 39 H 1.09004 * 109.46520 * 294.48762 * 4 2 1 40 40 H 1.08998 * 109.46624 * 186.60141 * 7 5 4 41 41 H 1.08996 * 109.47284 * 306.59957 * 7 5 4 42 42 H 1.09001 * 109.47093 * 66.60182 * 7 5 4 43 43 H 1.09005 * 110.36989 * 323.01002 * 11 10 8 44 44 H 1.09001 * 110.36613 * 85.21939 * 11 10 8 45 45 H 0.97007 * 119.99822 * 87.19681 * 14 12 11 46 46 H 0.97004 * 120.00157 * 180.02562 * 18 17 15 47 47 H 1.07997 * 126.90682 * 0.03652 * 26 25 23 48 48 H 1.07999 * 126.75016 * 179.85178 * 27 26 25 49 49 H 1.08995 * 109.88171 * 59.48770 * 30 10 8 50 50 H 1.08996 * 109.87982 * 298.31800 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5636 -0.8424 1.1819 6 1 3.9996 0.1431 1.0180 7 6 4.0880 -1.4194 2.4983 8 6 3.9453 -1.7557 0.0456 9 8 3.0834 -2.2599 -0.6429 10 7 5.2443 -2.0124 -0.2055 11 6 6.3888 -1.4686 0.5479 12 6 7.5781 -1.5232 -0.4432 13 1 7.5566 -0.6742 -1.1264 14 7 8.8552 -1.5868 0.2719 15 6 9.5374 -0.4347 0.5589 16 1 9.1341 0.5209 0.2576 17 6 10.7471 -0.4949 1.2368 18 7 11.2383 -1.6594 1.6043 19 14 11.6781 1.0767 1.6277 20 1 10.8336 1.9538 2.4779 21 1 12.9311 0.7429 2.3512 22 1 12.0097 1.7828 0.3641 23 6 7.2956 -2.8502 -1.1960 24 1 7.7338 -2.8315 -2.1938 25 7 7.7970 -3.9958 -0.4331 26 6 7.1755 -4.5837 0.6153 27 6 7.9852 -5.5910 1.0173 28 7 9.0442 -5.5762 0.2002 29 7 8.9024 -4.6194 -0.6479 30 6 5.7548 -2.8800 -1.2772 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 3.1248 1.4444 -0.1064 36 1 1.5924 1.9862 -0.8320 37 1 1.7661 1.9247 0.9384 38 1 1.5982 -1.7165 1.2999 39 1 1.7594 -0.1537 2.1364 40 1 5.1778 -1.3967 2.4964 41 1 3.7137 -0.8238 3.3308 42 1 3.7463 -2.4489 2.6054 43 1 6.1914 -0.4392 0.8473 44 1 6.5939 -2.0848 1.4234 45 1 9.2175 -2.4451 0.5421 46 1 12.0835 -1.7015 2.0785 47 1 6.2256 -4.3036 1.0463 48 1 7.8088 -6.2751 1.8341 49 1 5.4271 -2.5038 -2.2463 50 1 5.3957 -3.8988 -1.1319 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130059468.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:32:11 Heat of formation + Delta-G solvation = 75.554078 kcal Electronic energy + Delta-G solvation = -30836.081923 eV Core-core repulsion = 26901.030305 eV Total energy + Delta-G solvation = -3935.051618 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 3.97 seconds Orbital eigenvalues (eV) -42.89396 -40.41606 -38.26067 -36.38541 -34.39556 -33.81184 -32.89423 -31.30797 -30.58606 -29.40348 -27.83268 -27.31018 -26.66576 -25.00357 -23.80741 -22.67008 -22.24522 -21.39581 -20.42779 -20.08970 -18.98172 -17.82060 -17.37929 -17.18259 -15.94863 -15.62360 -15.33272 -15.02944 -14.81483 -14.68700 -14.43245 -13.84754 -13.81818 -13.66609 -13.49209 -13.42001 -13.06038 -12.92796 -12.62263 -12.37947 -12.36122 -12.27877 -11.93060 -11.81423 -11.58001 -11.54073 -11.24605 -11.19936 -11.03165 -10.93544 -10.76614 -10.56984 -10.51737 -10.47908 -10.29480 -9.99336 -9.71610 -9.59435 -9.16584 -8.92156 -8.65656 -7.29507 -5.95222 -3.31718 2.03714 2.59447 2.65452 2.92842 3.07019 3.32024 3.36920 3.39334 4.10529 4.41250 4.44979 4.57678 4.67367 4.72622 4.84423 4.91411 4.92043 5.10763 5.15655 5.17267 5.23166 5.30701 5.39726 5.45034 5.49446 5.49862 5.52064 5.62378 5.64805 5.67740 5.69653 5.73373 5.77333 5.82556 5.84761 5.90816 5.93867 6.06679 6.10398 6.13491 6.21578 6.27209 6.31991 6.40667 6.55079 6.99884 7.46704 7.48895 8.13982 8.17731 8.99565 9.30248 9.77404 10.11705 11.24421 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010627 B = 0.003991 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.208149 B = 7013.760143 C = 8797.790697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 C -0.150 4.150 4 C -0.092 4.092 5 C -0.108 4.108 6 H 0.099 0.901 7 C -0.153 4.153 8 C 0.536 3.464 9 O -0.543 6.543 10 N -0.616 5.616 11 C 0.065 3.935 12 C 0.166 3.834 13 H 0.093 0.907 14 N -0.704 5.704 15 C -0.268 4.268 16 H 0.075 0.925 17 C 0.002 3.998 18 N -0.916 5.916 19 Si 0.911 3.089 20 H -0.284 1.284 21 H -0.289 1.289 22 H -0.283 1.283 23 C 0.112 3.888 24 H 0.132 0.868 25 N -0.269 5.269 26 C -0.049 4.049 27 C -0.055 4.055 28 N -0.272 5.272 29 N -0.066 5.066 30 C 0.106 3.894 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.087 0.913 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.393 0.607 46 H 0.261 0.739 47 H 0.177 0.823 48 H 0.183 0.817 49 H 0.092 0.908 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.464 1.229 -1.098 18.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 C -0.207 4.207 4 C -0.130 4.130 5 C -0.129 4.129 6 H 0.117 0.883 7 C -0.211 4.211 8 C 0.325 3.675 9 O -0.420 6.420 10 N -0.351 5.351 11 C -0.061 4.061 12 C 0.051 3.949 13 H 0.110 0.890 14 N -0.344 5.344 15 C -0.398 4.398 16 H 0.093 0.907 17 C -0.196 4.196 18 N -0.560 5.560 19 Si 0.741 3.259 20 H -0.210 1.210 21 H -0.215 1.215 22 H -0.209 1.209 23 C 0.007 3.993 24 H 0.149 0.851 25 N -0.063 5.063 26 C -0.200 4.200 27 C -0.212 4.212 28 N -0.138 5.138 29 N -0.045 5.045 30 C -0.018 4.018 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.100 0.900 44 H 0.093 0.907 45 H 0.229 0.771 46 H 0.071 0.929 47 H 0.194 0.806 48 H 0.200 0.800 49 H 0.110 0.890 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.577 1.050 -2.283 17.755 hybrid contribution -0.284 0.789 1.180 1.448 sum -17.860 1.838 -1.103 17.988 Atomic orbital electron populations 1.21781 0.95530 1.01517 1.01149 1.21255 0.95579 0.95798 0.99701 1.21919 1.00970 0.96335 1.01456 1.21486 0.92348 1.01309 0.97861 1.21356 0.98139 0.99432 0.93998 0.88276 1.21934 1.02539 1.01262 0.95320 1.20396 0.80289 0.81593 0.85223 1.90660 1.48238 1.52489 1.50633 1.48555 1.05873 1.47965 1.32686 1.23771 0.85759 0.99609 0.96983 1.21687 0.87561 0.92820 0.92814 0.88968 1.42330 1.17854 1.08168 1.66060 1.19123 1.01951 0.86189 1.32585 0.90729 1.24844 0.97725 0.96895 1.00166 1.69688 1.20836 1.22806 1.42700 0.86244 0.79307 0.82285 0.78110 1.20996 1.21486 1.20935 1.23205 0.93471 0.85057 0.97517 0.85064 1.47219 1.14369 1.22439 1.22237 1.23387 1.02855 0.98905 0.94861 1.23451 0.92863 1.01617 1.03263 1.75101 1.21374 1.13478 1.03820 1.78386 1.01890 1.03599 1.20659 1.22134 0.90569 0.96246 0.92876 0.93156 0.93052 0.92771 0.89466 0.92790 0.92948 0.92878 0.91236 0.91484 0.90928 0.91449 0.92356 0.90006 0.90711 0.77115 0.92925 0.80573 0.80015 0.88964 0.90425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.19 37.16 0.34 -0.93 16 2 C -0.11 -1.06 2.71 -90.62 -0.25 -1.30 16 3 C -0.15 -1.35 8.82 37.16 0.33 -1.02 16 4 C -0.09 -0.91 3.79 -26.73 -0.10 -1.01 16 5 C -0.11 -1.13 1.96 -91.77 -0.18 -1.31 16 6 H 0.10 0.99 6.14 -51.93 -0.32 0.67 16 7 C -0.15 -1.50 8.90 37.16 0.33 -1.16 16 8 C 0.54 6.84 6.89 -10.99 -0.08 6.77 16 9 O -0.54 -8.28 14.40 5.55 0.08 -8.20 16 10 N -0.62 -7.67 3.32 -170.52 -0.57 -8.23 16 11 C 0.06 0.91 4.32 -2.53 -0.01 0.90 16 12 C 0.17 2.75 3.58 -65.78 -0.24 2.52 16 13 H 0.09 1.46 8.09 -51.93 -0.42 1.04 16 14 N -0.70 -15.95 5.21 -51.35 -0.27 -16.22 16 15 C -0.27 -6.80 9.96 -15.06 -0.15 -6.95 16 16 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 17 C 0.00 0.06 5.50 -17.43 -0.10 -0.03 16 18 N -0.92 -26.85 13.06 55.49 0.72 -26.13 16 19 Si 0.91 21.17 29.55 -169.99 -5.02 16.15 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 C 0.11 1.61 3.97 -66.10 -0.26 1.35 16 24 H 0.13 1.75 8.14 -51.93 -0.42 1.33 16 25 N -0.27 -4.52 2.24 -52.99 -0.12 -4.64 16 26 C -0.05 -0.75 9.23 -17.05 -0.16 -0.91 16 27 C -0.05 -0.89 12.05 -17.74 -0.21 -1.11 16 28 N -0.27 -5.46 12.41 30.23 0.38 -5.09 16 29 N -0.07 -1.33 12.58 60.35 0.76 -0.57 16 30 C 0.11 1.29 5.95 -3.06 -0.02 1.27 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.09 1.09 6.00 -51.92 -0.31 0.78 16 35 H 0.05 0.50 6.74 -51.93 -0.35 0.16 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.75 7.91 -51.93 -0.41 0.34 16 39 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 40 H 0.07 0.78 5.23 -51.93 -0.27 0.51 16 41 H 0.07 0.57 8.13 -51.93 -0.42 0.14 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.08 1.10 7.29 -51.93 -0.38 0.72 16 44 H 0.07 1.14 6.25 -51.93 -0.32 0.82 16 45 H 0.39 9.91 6.22 -40.82 -0.25 9.66 16 46 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 47 H 0.18 2.24 7.60 -52.49 -0.40 1.84 16 48 H 0.18 2.28 8.06 -52.49 -0.42 1.85 16 49 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 50 H 0.08 0.96 7.40 -51.93 -0.38 0.57 16 LS Contribution 391.37 15.07 5.90 5.90 Total: -1.00 -31.73 391.37 -6.90 -38.64 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -8.02 Total: 11.33 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -0.75 Total: -2.94 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: 0.91 Total: -60.88 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.08 Total: -8.20 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.73 -6.90 -38.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130059468.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.193 kcal (2) G-P(sol) polarization free energy of solvation -31.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.97 seconds