Wall clock time and date at job start Wed Apr 1 2020 01:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47141 * 2 1 4 4 C 1.52997 * 109.46967 * 120.00489 * 2 1 3 5 5 C 1.53000 * 109.47044 * 174.49260 * 4 2 1 6 6 H 1.08996 * 109.47484 * 53.64666 * 5 4 2 7 7 C 1.53004 * 109.47048 * 173.64812 * 5 4 2 8 8 C 1.50699 * 109.47054 * 293.64678 * 5 4 2 9 9 O 1.21287 * 119.99814 * 0.02562 * 8 5 4 10 10 N 1.34774 * 120.00323 * 180.02562 * 8 5 4 11 11 C 1.47423 * 125.64622 * 359.95388 * 10 8 5 12 12 C 1.54910 * 104.83295 * 204.16552 * 11 10 8 13 13 H 1.09003 * 111.00309 * 81.07053 * 12 11 10 14 14 N 1.46503 * 111.00524 * 204.91823 * 12 11 10 15 15 C 1.36937 * 120.00411 * 267.20152 * 14 12 11 16 16 H 1.08007 * 119.99593 * 359.97438 * 15 14 12 17 17 C 1.38801 * 120.00433 * 179.97438 * 15 14 12 18 18 N 1.31622 * 119.99965 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00290 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46935 * 60.00053 * 19 17 15 21 21 H 1.48497 * 109.47142 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47027 * 300.00224 * 19 17 15 23 23 C 1.55152 * 101.58203 * 322.99232 * 12 11 10 24 24 H 1.09001 * 110.87185 * 153.93212 * 23 12 11 25 25 N 1.46492 * 110.72339 * 277.13873 * 23 12 11 26 26 C 1.35315 * 125.87250 * 80.27314 * 25 23 12 27 27 C 1.35350 * 106.17739 * 180.18964 * 26 25 23 28 28 N 1.33768 * 106.49882 * 359.58925 * 27 26 25 29 29 N 1.28644 * 108.88408 * 0.26037 * 28 27 26 30 30 C 1.47026 * 125.65038 * 180.02562 * 10 8 5 31 31 H 1.09000 * 109.47145 * 300.00066 * 1 2 3 32 32 H 1.09007 * 109.47452 * 59.99660 * 1 2 3 33 33 H 1.09001 * 109.47337 * 179.97438 * 1 2 3 34 34 H 1.09007 * 109.46797 * 240.00486 * 2 1 3 35 35 H 1.08998 * 109.47055 * 185.94395 * 3 2 1 36 36 H 1.09001 * 109.47175 * 305.94459 * 3 2 1 37 37 H 1.08998 * 109.46813 * 65.94089 * 3 2 1 38 38 H 1.08998 * 109.47420 * 54.48611 * 4 2 1 39 39 H 1.09004 * 109.46520 * 294.48762 * 4 2 1 40 40 H 1.08998 * 109.46624 * 186.60141 * 7 5 4 41 41 H 1.08996 * 109.47284 * 306.59957 * 7 5 4 42 42 H 1.09001 * 109.47093 * 66.60182 * 7 5 4 43 43 H 1.09005 * 110.36989 * 323.01002 * 11 10 8 44 44 H 1.09001 * 110.36613 * 85.21939 * 11 10 8 45 45 H 0.97007 * 119.99822 * 87.19681 * 14 12 11 46 46 H 0.97004 * 120.00157 * 180.02562 * 18 17 15 47 47 H 1.07997 * 126.90682 * 0.03652 * 26 25 23 48 48 H 1.07999 * 126.75016 * 179.85178 * 27 26 25 49 49 H 1.08995 * 109.88171 * 59.48770 * 30 10 8 50 50 H 1.08996 * 109.87982 * 298.31800 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5636 -0.8424 1.1819 6 1 3.9996 0.1431 1.0180 7 6 4.0880 -1.4194 2.4983 8 6 3.9453 -1.7557 0.0456 9 8 3.0834 -2.2599 -0.6429 10 7 5.2443 -2.0124 -0.2055 11 6 6.3888 -1.4686 0.5479 12 6 7.5781 -1.5232 -0.4432 13 1 7.5566 -0.6742 -1.1264 14 7 8.8552 -1.5868 0.2719 15 6 9.5374 -0.4347 0.5589 16 1 9.1341 0.5209 0.2576 17 6 10.7471 -0.4949 1.2368 18 7 11.2383 -1.6594 1.6043 19 14 11.6781 1.0767 1.6277 20 1 10.8336 1.9538 2.4779 21 1 12.9311 0.7429 2.3512 22 1 12.0097 1.7828 0.3641 23 6 7.2956 -2.8502 -1.1960 24 1 7.7338 -2.8315 -2.1938 25 7 7.7970 -3.9958 -0.4331 26 6 7.1755 -4.5837 0.6153 27 6 7.9852 -5.5910 1.0173 28 7 9.0442 -5.5762 0.2002 29 7 8.9024 -4.6194 -0.6479 30 6 5.7548 -2.8800 -1.2772 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 3.1248 1.4444 -0.1064 36 1 1.5924 1.9862 -0.8320 37 1 1.7661 1.9247 0.9384 38 1 1.5982 -1.7165 1.2999 39 1 1.7594 -0.1537 2.1364 40 1 5.1778 -1.3967 2.4964 41 1 3.7137 -0.8238 3.3308 42 1 3.7463 -2.4489 2.6054 43 1 6.1914 -0.4392 0.8473 44 1 6.5939 -2.0848 1.4234 45 1 9.2175 -2.4451 0.5421 46 1 12.0835 -1.7015 2.0785 47 1 6.2256 -4.3036 1.0463 48 1 7.8088 -6.2751 1.8341 49 1 5.4271 -2.5038 -2.2463 50 1 5.3957 -3.8988 -1.1319 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130059468.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:32:06 Heat of formation + Delta-G solvation = 55.491914 kcal Electronic energy + Delta-G solvation = -30836.951883 eV Core-core repulsion = 26901.030305 eV Total energy + Delta-G solvation = -3935.921578 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 4.66 seconds Orbital eigenvalues (eV) -44.22448 -41.47900 -39.40954 -37.28532 -35.97668 -35.08811 -33.82982 -33.04110 -31.90121 -30.65726 -29.22086 -28.00155 -27.43527 -26.26754 -25.45207 -23.77008 -23.60527 -22.60515 -21.54111 -21.07443 -20.00937 -19.48880 -18.64446 -18.29671 -17.22262 -16.92094 -16.41272 -16.37362 -16.00137 -15.83797 -15.50361 -15.30391 -15.06064 -14.76935 -14.61806 -14.54274 -14.31346 -14.00078 -13.56742 -13.51450 -13.23454 -13.03218 -12.94823 -12.93731 -12.74604 -12.67672 -12.57647 -12.55719 -12.43356 -12.26096 -12.14141 -11.90361 -11.80688 -11.55060 -11.34649 -11.30251 -11.16813 -10.87987 -10.64649 -10.24717 -9.77078 -9.14901 -7.96753 -5.31217 0.72784 1.40125 1.48790 1.51018 1.57198 1.61437 1.72522 1.86102 2.52541 2.99123 3.23885 3.49019 3.56680 3.65920 3.71780 3.81437 3.95657 3.99674 4.10814 4.16242 4.18245 4.22598 4.34798 4.35879 4.38049 4.47686 4.53506 4.56144 4.75961 4.78832 4.84269 4.88206 4.89727 4.92796 4.97877 5.02629 5.06945 5.10991 5.12905 5.20677 5.30952 5.32281 5.40831 5.49289 5.53471 5.62899 5.72737 6.19095 6.41309 7.11994 7.28350 7.62592 7.95629 8.17733 9.24382 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010627 B = 0.003991 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.208149 B = 7013.760143 C = 8797.790697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 C -0.147 4.147 4 C -0.089 4.089 5 C -0.105 4.105 6 H 0.108 0.892 7 C -0.150 4.150 8 C 0.536 3.464 9 O -0.566 6.566 10 N -0.610 5.610 11 C 0.085 3.915 12 C 0.157 3.843 13 H 0.104 0.896 14 N -0.722 5.722 15 C -0.251 4.251 16 H 0.090 0.910 17 C -0.066 4.066 18 N -0.963 5.963 19 Si 0.972 3.028 20 H -0.271 1.271 21 H -0.304 1.304 22 H -0.277 1.277 23 C 0.113 3.887 24 H 0.140 0.860 25 N -0.265 5.265 26 C -0.039 4.039 27 C -0.062 4.062 28 N -0.310 5.310 29 N -0.109 5.109 30 C 0.115 3.885 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.084 0.916 42 H 0.056 0.944 43 H 0.092 0.908 44 H 0.065 0.935 45 H 0.378 0.622 46 H 0.250 0.750 47 H 0.204 0.796 48 H 0.215 0.785 49 H 0.112 0.888 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.953 2.867 -0.713 21.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 C -0.204 4.204 4 C -0.127 4.127 5 C -0.125 4.125 6 H 0.126 0.874 7 C -0.207 4.207 8 C 0.327 3.673 9 O -0.445 6.445 10 N -0.345 5.345 11 C -0.041 4.041 12 C 0.044 3.956 13 H 0.122 0.878 14 N -0.362 5.362 15 C -0.383 4.383 16 H 0.108 0.892 17 C -0.259 4.259 18 N -0.612 5.612 19 Si 0.801 3.199 20 H -0.196 1.196 21 H -0.231 1.231 22 H -0.204 1.204 23 C 0.009 3.991 24 H 0.158 0.842 25 N -0.059 5.059 26 C -0.190 4.190 27 C -0.219 4.219 28 N -0.175 5.175 29 N -0.088 5.088 30 C -0.009 4.009 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.105 0.895 40 H 0.080 0.920 41 H 0.103 0.897 42 H 0.075 0.925 43 H 0.111 0.889 44 H 0.084 0.916 45 H 0.212 0.788 46 H 0.058 0.942 47 H 0.221 0.779 48 H 0.232 0.768 49 H 0.130 0.870 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -20.123 2.721 -1.947 20.400 hybrid contribution 0.319 0.266 0.996 1.079 sum -19.804 2.987 -0.951 20.050 Atomic orbital electron populations 1.21763 0.94756 1.01335 1.01951 1.21208 0.96286 0.96194 0.98640 1.21895 1.00642 0.95638 1.02242 1.21477 0.91694 1.00939 0.98540 1.21404 0.98706 0.99163 0.93276 0.87399 1.21911 1.01767 1.01546 0.95461 1.20825 0.79707 0.81383 0.85369 1.90665 1.48688 1.53499 1.51616 1.48487 1.05585 1.47862 1.32542 1.23323 0.84956 1.00186 0.95622 1.21960 0.86023 0.94411 0.93177 0.87811 1.42452 1.19950 1.06745 1.67024 1.19609 1.01299 0.87582 1.29760 0.89174 1.25608 0.99330 0.99321 1.01645 1.69872 1.21083 1.25022 1.45231 0.85247 0.77553 0.79203 0.77899 1.19646 1.23101 1.20351 1.23310 0.95051 0.83379 0.97318 0.84227 1.47384 1.13648 1.22398 1.22475 1.23821 1.03299 0.98006 0.93903 1.24101 0.91909 1.02415 1.03507 1.75035 1.23197 1.14255 1.04966 1.78319 1.03645 1.04851 1.21994 1.22129 0.88483 0.96590 0.93736 0.91836 0.92788 0.93461 0.92135 0.93199 0.92750 0.91642 0.92451 0.89517 0.91973 0.89685 0.92507 0.88930 0.91648 0.78826 0.94163 0.77923 0.76840 0.87041 0.90097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.19 71.98 0.66 -1.57 16 2 C -0.10 -1.90 2.71 -10.79 -0.03 -1.93 16 3 C -0.15 -2.28 8.82 71.98 0.63 -1.64 16 4 C -0.09 -1.52 3.79 30.59 0.12 -1.40 16 5 C -0.10 -1.90 1.96 -11.54 -0.02 -1.92 16 6 H 0.11 1.81 6.14 -2.39 -0.01 1.80 16 7 C -0.15 -2.49 8.90 71.98 0.64 -1.85 16 8 C 0.54 12.46 6.89 87.66 0.60 13.06 16 9 O -0.57 -16.25 14.40 -3.05 -0.04 -16.29 16 10 N -0.61 -13.68 3.32 -811.79 -2.70 -16.37 16 11 C 0.08 2.19 4.32 86.86 0.38 2.56 16 12 C 0.16 4.94 3.58 46.38 0.17 5.11 16 13 H 0.10 3.05 8.09 -2.39 -0.02 3.03 16 14 N -0.72 -32.42 5.21 -316.38 -1.65 -34.07 16 15 C -0.25 -12.56 9.96 84.03 0.84 -11.72 16 16 H 0.09 4.12 7.83 -2.91 -0.02 4.10 16 17 C -0.07 -3.57 5.50 84.86 0.47 -3.10 16 18 N -0.96 -58.11 13.06 21.65 0.28 -57.83 16 19 Si 0.97 43.76 29.55 68.60 2.03 45.79 16 20 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 21 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 22 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 23 C 0.11 3.10 3.97 46.18 0.18 3.28 16 24 H 0.14 3.58 8.14 -2.39 -0.02 3.56 16 25 N -0.27 -8.77 2.24 -321.57 -0.72 -9.49 16 26 C -0.04 -1.14 9.23 83.49 0.77 -0.37 16 27 C -0.06 -1.97 12.05 83.73 1.01 -0.96 16 28 N -0.31 -12.67 12.41 -58.26 -0.72 -13.39 16 29 N -0.11 -4.51 12.58 37.02 0.47 -4.05 16 30 C 0.11 2.51 5.95 86.73 0.52 3.03 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.06 1.44 6.00 -2.38 -0.01 1.42 16 35 H 0.05 0.80 6.74 -2.39 -0.02 0.79 16 36 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.06 1.13 7.91 -2.39 -0.02 1.11 16 39 H 0.09 1.16 8.13 -2.39 -0.02 1.14 16 40 H 0.06 1.18 5.23 -2.39 -0.01 1.17 16 41 H 0.08 1.14 8.13 -2.39 -0.02 1.12 16 42 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.09 2.22 7.29 -2.38 -0.02 2.21 16 44 H 0.07 1.87 6.25 -2.39 -0.01 1.85 16 45 H 0.38 19.32 6.22 -92.70 -0.58 18.74 16 46 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 47 H 0.20 4.67 7.60 -2.91 -0.02 4.65 16 48 H 0.21 5.03 8.06 -2.91 -0.02 5.00 16 49 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 50 H 0.08 1.80 7.40 -2.39 -0.02 1.78 16 Total: -1.00 -70.41 391.37 4.24 -66.17 By element: Atomic # 1 Polarization: 38.59 SS G_CDS: 0.37 Total: 38.96 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: 6.93 Total: 0.57 kcal Atomic # 7 Polarization: -130.16 SS G_CDS: -5.04 Total: -135.20 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.04 Total: -16.29 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -70.41 4.24 -66.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130059468.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.667 kcal (2) G-P(sol) polarization free energy of solvation -70.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.66 seconds