Wall clock time and date at job start Wed Apr 1 2020 01:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46656 * 2 1 4 4 C 1.52999 * 109.47151 * 120.00168 * 2 1 3 5 5 C 1.52998 * 109.46837 * 175.00102 * 4 2 1 6 6 H 1.09002 * 109.47322 * 55.00298 * 5 4 2 7 7 C 1.53000 * 109.47281 * 295.00018 * 5 4 2 8 8 C 1.50704 * 109.47087 * 175.00217 * 5 4 2 9 9 O 1.21283 * 120.00113 * 34.88296 * 8 5 4 10 10 N 1.34776 * 119.99919 * 214.88616 * 8 5 4 11 11 C 1.47423 * 125.65148 * 354.90815 * 10 8 5 12 12 C 1.55380 * 104.87601 * 204.09619 * 11 10 8 13 13 H 1.09005 * 111.02818 * 80.97738 * 12 11 10 14 14 N 1.46503 * 111.19105 * 204.97795 * 12 11 10 15 15 C 1.36936 * 119.99960 * 267.03966 * 14 12 11 16 16 H 1.08003 * 119.99958 * 359.97438 * 15 14 12 17 17 C 1.38811 * 120.00005 * 179.97438 * 15 14 12 18 18 N 1.31618 * 120.00070 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00017 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.46996 * 89.99886 * 19 17 15 21 21 H 1.48501 * 109.47162 * 209.99565 * 19 17 15 22 22 H 1.48496 * 109.47310 * 329.99678 * 19 17 15 23 23 C 1.55161 * 101.36515 * 323.01296 * 12 11 10 24 24 H 1.09001 * 110.71983 * 153.94703 * 23 12 11 25 25 N 1.46497 * 110.71996 * 277.04336 * 23 12 11 26 26 C 1.35310 * 125.86820 * 82.85153 * 25 23 12 27 27 C 1.35356 * 106.17657 * 180.18525 * 26 25 23 28 28 N 1.33770 * 106.49175 * 359.59208 * 27 26 25 29 29 N 1.28634 * 108.89160 * 0.26335 * 28 27 26 30 30 C 1.47022 * 125.64745 * 174.86151 * 10 8 5 31 31 H 1.09004 * 109.47042 * 299.99670 * 1 2 3 32 32 H 1.08994 * 109.47103 * 59.99716 * 1 2 3 33 33 H 1.09000 * 109.46694 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.46853 * 240.00632 * 2 1 3 35 35 H 1.08996 * 109.46973 * 60.00705 * 3 2 1 36 36 H 1.09007 * 109.46607 * 180.02562 * 3 2 1 37 37 H 1.08994 * 109.47596 * 299.99982 * 3 2 1 38 38 H 1.08998 * 109.46830 * 55.00215 * 4 2 1 39 39 H 1.09002 * 109.47411 * 294.99858 * 4 2 1 40 40 H 1.08995 * 109.46938 * 65.25138 * 7 5 4 41 41 H 1.08996 * 109.47369 * 185.25397 * 7 5 4 42 42 H 1.09006 * 109.46899 * 305.25576 * 7 5 4 43 43 H 1.09004 * 110.36715 * 322.93230 * 11 10 8 44 44 H 1.09004 * 110.37080 * 85.13933 * 11 10 8 45 45 H 0.96996 * 120.00148 * 87.03617 * 14 12 11 46 46 H 0.96999 * 120.00399 * 180.02562 * 18 17 15 47 47 H 1.08003 * 126.91356 * 0.04448 * 26 25 23 48 48 H 1.08000 * 126.75347 * 179.85362 * 27 26 25 49 49 H 1.08998 * 109.87974 * 59.56132 * 30 10 8 50 50 H 1.09004 * 110.01266 * 298.46445 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.8310 1.1879 6 1 3.9955 0.1612 1.0527 7 6 3.9650 -1.7251 0.0125 8 6 4.0775 -1.4303 2.4721 9 8 3.4275 -2.2768 3.0481 10 7 5.2582 -1.0255 2.9805 11 6 6.1957 -0.0885 2.3351 12 6 7.5821 -0.4236 2.9514 13 1 8.0279 -1.2904 2.4634 14 7 8.4818 0.7311 2.8904 15 6 9.3319 0.8813 1.8275 16 1 9.3395 0.1483 1.0343 17 6 10.1839 1.9756 1.7694 18 7 11.0014 2.1197 0.7480 19 14 10.1714 3.2429 3.1417 20 1 11.1502 2.8501 4.1872 21 1 10.5412 4.5718 2.5917 22 1 8.8129 3.3143 3.7372 23 6 7.1942 -0.7495 4.4179 24 1 7.9223 -1.4238 4.8687 25 7 7.0704 0.4789 5.2065 26 6 5.9821 1.2813 5.2587 27 6 6.3008 2.2949 6.0973 28 7 7.5487 2.0611 6.5186 29 7 7.9765 0.9778 5.9726 30 6 5.8241 -1.4445 4.2711 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5137 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1300 1.4426 -0.0005 37 1 1.6767 1.9564 -0.8899 38 1 1.6055 -1.7198 1.2950 39 1 1.7518 -0.1584 2.1370 40 1 3.6764 -1.2461 -0.9230 41 1 5.0440 -1.8792 0.0241 42 1 3.4596 -2.6870 0.0992 43 1 6.2112 -0.2496 1.2572 44 1 5.9179 0.9413 2.5600 45 1 8.4752 1.3892 3.6030 46 1 11.5971 2.8842 0.7076 47 1 5.0480 1.1423 4.7347 48 1 5.6699 3.1263 6.3752 49 1 5.9540 -2.5266 4.2851 50 1 5.1650 -1.1398 5.0841 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130059469.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:32:25 Heat of formation + Delta-G solvation = 75.680374 kcal Electronic energy + Delta-G solvation = -30766.450896 eV Core-core repulsion = 26831.404755 eV Total energy + Delta-G solvation = -3935.046141 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 4.27 seconds Orbital eigenvalues (eV) -43.15503 -40.39916 -38.34492 -36.91878 -34.50756 -33.82331 -32.77940 -31.56160 -30.84126 -29.69379 -28.17345 -27.38348 -26.90770 -25.13249 -23.71028 -23.01260 -22.42723 -21.57668 -20.41088 -19.95976 -18.98910 -18.21055 -17.65342 -17.29016 -15.97933 -15.73756 -15.64795 -15.40329 -14.90894 -14.78013 -14.25446 -14.16287 -14.01631 -13.81308 -13.57392 -13.44420 -13.20031 -12.92493 -12.82908 -12.58762 -12.50631 -12.24096 -12.13457 -11.88251 -11.67680 -11.54496 -11.48666 -11.41903 -11.21963 -10.98831 -10.91834 -10.75663 -10.72868 -10.66965 -10.29462 -9.96220 -9.81750 -9.72827 -9.23292 -9.16963 -8.76305 -7.61482 -5.99442 -3.40890 1.78284 2.40322 2.54069 2.78949 2.81330 3.31410 3.35770 3.44468 3.95570 4.34805 4.43416 4.47309 4.51033 4.61510 4.66088 4.72284 4.84533 4.93953 4.99959 5.09968 5.12372 5.18629 5.24366 5.30781 5.37036 5.39076 5.39760 5.42469 5.44490 5.53183 5.61081 5.62091 5.66942 5.69845 5.79176 5.82645 5.86199 5.91786 5.96554 5.99922 6.09476 6.15764 6.19398 6.21733 6.30713 6.75604 7.36989 7.68141 8.05705 8.16976 8.72451 8.90885 9.64541 9.77434 11.16513 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011086 B = 0.003966 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.170274 B = 7058.264363 C = 7987.122254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.152 4.152 4 C -0.095 4.095 5 C -0.108 4.108 6 H 0.095 0.905 7 C -0.141 4.141 8 C 0.537 3.463 9 O -0.545 6.545 10 N -0.618 5.618 11 C 0.065 3.935 12 C 0.175 3.825 13 H 0.103 0.897 14 N -0.728 5.728 15 C -0.267 4.267 16 H 0.096 0.904 17 C 0.023 3.977 18 N -0.920 5.920 19 Si 0.879 3.121 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.279 1.279 23 C 0.108 3.892 24 H 0.136 0.864 25 N -0.271 5.271 26 C -0.047 4.047 27 C -0.055 4.055 28 N -0.276 5.276 29 N -0.075 5.075 30 C 0.106 3.894 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.087 0.913 44 H 0.071 0.929 45 H 0.370 0.630 46 H 0.264 0.736 47 H 0.182 0.818 48 H 0.186 0.814 49 H 0.095 0.905 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.048 -5.598 0.856 19.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.210 4.210 4 C -0.133 4.133 5 C -0.129 4.129 6 H 0.113 0.887 7 C -0.199 4.199 8 C 0.327 3.673 9 O -0.422 6.422 10 N -0.353 5.353 11 C -0.061 4.061 12 C 0.060 3.940 13 H 0.121 0.879 14 N -0.369 5.369 15 C -0.396 4.396 16 H 0.114 0.886 17 C -0.176 4.176 18 N -0.565 5.565 19 Si 0.709 3.291 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.205 1.205 23 C 0.004 3.996 24 H 0.153 0.847 25 N -0.065 5.065 26 C -0.198 4.198 27 C -0.213 4.213 28 N -0.141 5.141 29 N -0.055 5.055 30 C -0.018 4.018 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.106 0.894 44 H 0.089 0.911 45 H 0.205 0.795 46 H 0.074 0.926 47 H 0.199 0.801 48 H 0.203 0.797 49 H 0.113 0.887 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.822 -6.236 1.455 18.937 hybrid contribution -1.008 1.239 0.386 1.643 sum -18.830 -4.997 1.841 19.569 Atomic orbital electron populations 1.21827 0.95202 1.01684 1.01681 1.21175 0.95694 0.96450 0.98365 1.21930 1.01472 0.95805 1.01751 1.21505 0.92352 1.01538 0.97938 1.21356 0.97695 1.01102 0.92792 0.88691 1.21758 1.02026 0.99457 0.96646 1.20456 0.78969 0.81608 0.86317 1.90683 1.57172 1.32255 1.62087 1.48570 1.19687 1.46833 1.20222 1.23697 0.90252 0.92822 0.99367 1.21723 0.89547 0.93721 0.88972 0.87923 1.42674 1.43429 1.24680 1.26127 1.18980 1.13328 1.08252 0.99053 0.88592 1.24633 0.97660 0.98095 0.97167 1.69687 1.25491 1.31104 1.30185 0.86650 0.78289 0.81862 0.82323 1.20258 1.21391 1.20500 1.23315 0.98878 0.82828 0.94557 0.84659 1.47330 1.09808 1.19366 1.29974 1.23489 0.95502 0.94838 1.05926 1.23526 0.95117 1.01383 1.01243 1.75105 1.10260 1.08272 1.20499 1.78384 1.14953 1.06677 1.05451 1.22129 0.92034 1.00313 0.87360 0.92764 0.92721 0.92710 0.90722 0.92720 0.92192 0.92712 0.90811 0.91850 0.91099 0.91936 0.91899 0.89448 0.91099 0.79523 0.92607 0.80134 0.79703 0.88657 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.19 37.16 0.34 -0.72 16 2 C -0.10 -0.78 2.78 -90.61 -0.25 -1.03 16 3 C -0.15 -1.23 8.95 37.16 0.33 -0.90 16 4 C -0.10 -0.90 3.73 -26.73 -0.10 -1.00 16 5 C -0.11 -1.10 2.02 -91.77 -0.19 -1.29 16 6 H 0.09 0.94 5.34 -51.93 -0.28 0.66 16 7 C -0.14 -1.32 8.80 37.16 0.33 -0.99 16 8 C 0.54 6.78 6.84 -10.98 -0.08 6.71 16 9 O -0.54 -8.46 16.71 5.56 0.09 -8.37 16 10 N -0.62 -7.43 3.33 -170.22 -0.57 -8.00 16 11 C 0.06 0.87 5.44 -2.27 -0.01 0.86 16 12 C 0.18 2.77 3.60 -65.52 -0.24 2.53 16 13 H 0.10 1.57 8.09 -51.93 -0.42 1.15 16 14 N -0.73 -15.66 5.02 -51.10 -0.26 -15.92 16 15 C -0.27 -6.92 10.44 -15.06 -0.16 -7.08 16 16 H 0.10 2.59 8.06 -52.48 -0.42 2.17 16 17 C 0.02 0.63 5.50 -17.43 -0.10 0.54 16 18 N -0.92 -27.52 13.97 55.49 0.78 -26.75 16 19 Si 0.88 22.49 27.74 -169.99 -4.71 17.77 16 20 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 22 H -0.28 -7.03 6.52 56.52 0.37 -6.66 16 23 C 0.11 1.45 3.96 -66.10 -0.26 1.19 16 24 H 0.14 1.64 8.14 -51.93 -0.42 1.22 16 25 N -0.27 -4.24 2.31 -52.98 -0.12 -4.36 16 26 C -0.05 -0.65 9.26 -17.05 -0.16 -0.81 16 27 C -0.06 -0.82 12.05 -17.74 -0.21 -1.04 16 28 N -0.28 -5.16 12.41 30.24 0.38 -4.78 16 29 N -0.08 -1.42 12.43 60.35 0.75 -0.67 16 30 C 0.11 1.20 5.92 -3.06 -0.02 1.19 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.57 6.46 -51.93 -0.34 0.24 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.51 6.46 -51.93 -0.34 0.18 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.76 8.02 -51.93 -0.42 0.34 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.56 6.72 -51.93 -0.35 0.21 16 41 H 0.06 0.61 7.97 -51.93 -0.41 0.20 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.09 1.16 7.50 -51.93 -0.39 0.77 16 44 H 0.07 1.02 7.40 -51.93 -0.38 0.64 16 45 H 0.37 8.40 3.97 -40.82 -0.16 8.23 16 46 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 47 H 0.18 2.04 7.70 -52.48 -0.40 1.64 16 48 H 0.19 2.05 8.06 -52.49 -0.42 1.63 16 49 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 50 H 0.08 0.89 7.29 -51.93 -0.38 0.51 16 LS Contribution 393.76 15.07 5.93 5.93 Total: -1.00 -33.05 393.76 -6.58 -39.63 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -8.08 Total: 7.34 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -0.76 Total: -1.83 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: 0.95 Total: -60.48 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.09 Total: -8.37 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.71 Total: 17.77 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.05 -6.58 -39.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130059469.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.309 kcal (2) G-P(sol) polarization free energy of solvation -33.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.28 seconds