Wall clock time and date at job start Wed Apr 1 2020 01:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46656 * 2 1 4 4 C 1.52999 * 109.47151 * 120.00168 * 2 1 3 5 5 C 1.52998 * 109.46837 * 175.00102 * 4 2 1 6 6 H 1.09002 * 109.47322 * 55.00298 * 5 4 2 7 7 C 1.53000 * 109.47281 * 295.00018 * 5 4 2 8 8 C 1.50704 * 109.47087 * 175.00217 * 5 4 2 9 9 O 1.21283 * 120.00113 * 34.88296 * 8 5 4 10 10 N 1.34776 * 119.99919 * 214.88616 * 8 5 4 11 11 C 1.47423 * 125.65148 * 354.90815 * 10 8 5 12 12 C 1.55380 * 104.87601 * 204.09619 * 11 10 8 13 13 H 1.09005 * 111.02818 * 80.97738 * 12 11 10 14 14 N 1.46503 * 111.19105 * 204.97795 * 12 11 10 15 15 C 1.36936 * 119.99960 * 267.03966 * 14 12 11 16 16 H 1.08003 * 119.99958 * 359.97438 * 15 14 12 17 17 C 1.38811 * 120.00005 * 179.97438 * 15 14 12 18 18 N 1.31618 * 120.00070 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00017 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.46996 * 89.99886 * 19 17 15 21 21 H 1.48501 * 109.47162 * 209.99565 * 19 17 15 22 22 H 1.48496 * 109.47310 * 329.99678 * 19 17 15 23 23 C 1.55161 * 101.36515 * 323.01296 * 12 11 10 24 24 H 1.09001 * 110.71983 * 153.94703 * 23 12 11 25 25 N 1.46497 * 110.71996 * 277.04336 * 23 12 11 26 26 C 1.35310 * 125.86820 * 82.85153 * 25 23 12 27 27 C 1.35356 * 106.17657 * 180.18525 * 26 25 23 28 28 N 1.33770 * 106.49175 * 359.59208 * 27 26 25 29 29 N 1.28634 * 108.89160 * 0.26335 * 28 27 26 30 30 C 1.47022 * 125.64745 * 174.86151 * 10 8 5 31 31 H 1.09004 * 109.47042 * 299.99670 * 1 2 3 32 32 H 1.08994 * 109.47103 * 59.99716 * 1 2 3 33 33 H 1.09000 * 109.46694 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.46853 * 240.00632 * 2 1 3 35 35 H 1.08996 * 109.46973 * 60.00705 * 3 2 1 36 36 H 1.09007 * 109.46607 * 180.02562 * 3 2 1 37 37 H 1.08994 * 109.47596 * 299.99982 * 3 2 1 38 38 H 1.08998 * 109.46830 * 55.00215 * 4 2 1 39 39 H 1.09002 * 109.47411 * 294.99858 * 4 2 1 40 40 H 1.08995 * 109.46938 * 65.25138 * 7 5 4 41 41 H 1.08996 * 109.47369 * 185.25397 * 7 5 4 42 42 H 1.09006 * 109.46899 * 305.25576 * 7 5 4 43 43 H 1.09004 * 110.36715 * 322.93230 * 11 10 8 44 44 H 1.09004 * 110.37080 * 85.13933 * 11 10 8 45 45 H 0.96996 * 120.00148 * 87.03617 * 14 12 11 46 46 H 0.96999 * 120.00399 * 180.02562 * 18 17 15 47 47 H 1.08003 * 126.91356 * 0.04448 * 26 25 23 48 48 H 1.08000 * 126.75347 * 179.85362 * 27 26 25 49 49 H 1.08998 * 109.87974 * 59.56132 * 30 10 8 50 50 H 1.09004 * 110.01266 * 298.46445 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.8310 1.1879 6 1 3.9955 0.1612 1.0527 7 6 3.9650 -1.7251 0.0125 8 6 4.0775 -1.4303 2.4721 9 8 3.4275 -2.2768 3.0481 10 7 5.2582 -1.0255 2.9805 11 6 6.1957 -0.0885 2.3351 12 6 7.5821 -0.4236 2.9514 13 1 8.0279 -1.2904 2.4634 14 7 8.4818 0.7311 2.8904 15 6 9.3319 0.8813 1.8275 16 1 9.3395 0.1483 1.0343 17 6 10.1839 1.9756 1.7694 18 7 11.0014 2.1197 0.7480 19 14 10.1714 3.2429 3.1417 20 1 11.1502 2.8501 4.1872 21 1 10.5412 4.5718 2.5917 22 1 8.8129 3.3143 3.7372 23 6 7.1942 -0.7495 4.4179 24 1 7.9223 -1.4238 4.8687 25 7 7.0704 0.4789 5.2065 26 6 5.9821 1.2813 5.2587 27 6 6.3008 2.2949 6.0973 28 7 7.5487 2.0611 6.5186 29 7 7.9765 0.9778 5.9726 30 6 5.8241 -1.4445 4.2711 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5137 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1300 1.4426 -0.0005 37 1 1.6767 1.9564 -0.8899 38 1 1.6055 -1.7198 1.2950 39 1 1.7518 -0.1584 2.1370 40 1 3.6764 -1.2461 -0.9230 41 1 5.0440 -1.8792 0.0241 42 1 3.4596 -2.6870 0.0992 43 1 6.2112 -0.2496 1.2572 44 1 5.9179 0.9413 2.5600 45 1 8.4752 1.3892 3.6030 46 1 11.5971 2.8842 0.7076 47 1 5.0480 1.1423 4.7347 48 1 5.6699 3.1263 6.3752 49 1 5.9540 -2.5266 4.2851 50 1 5.1650 -1.1398 5.0841 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130059469.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:32:23 Heat of formation + Delta-G solvation = 54.484964 kcal Electronic energy + Delta-G solvation = -30767.369998 eV Core-core repulsion = 26831.404755 eV Total energy + Delta-G solvation = -3935.965243 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 7.44 seconds Orbital eigenvalues (eV) -44.36519 -41.44036 -39.44157 -37.74743 -36.14882 -35.05080 -33.57999 -33.42571 -32.02433 -30.90780 -29.49279 -27.97632 -27.62891 -26.25824 -25.36224 -23.97444 -23.69354 -22.81979 -21.64510 -20.75726 -20.09964 -19.80691 -18.82201 -18.35960 -17.32252 -16.83955 -16.69523 -16.43119 -16.23248 -15.99826 -15.63116 -15.28033 -14.98129 -14.84347 -14.72619 -14.49314 -14.42814 -14.16039 -13.97642 -13.71140 -13.32670 -13.15474 -13.12075 -13.07833 -12.92071 -12.79912 -12.72878 -12.55460 -12.33176 -12.20500 -12.14560 -11.97027 -11.91094 -11.62739 -11.41578 -11.38766 -11.32560 -11.01622 -10.75336 -10.37552 -9.86162 -9.49028 -8.13457 -5.48246 0.59273 1.25612 1.28174 1.32619 1.36396 1.53664 1.59145 1.78611 2.35199 2.85097 3.10602 3.34289 3.41283 3.56561 3.60649 3.77299 3.84677 3.92447 3.96696 4.10715 4.15474 4.17012 4.23982 4.26440 4.39355 4.42536 4.48724 4.53425 4.68367 4.74609 4.78731 4.83558 4.84770 4.90007 4.93821 4.96945 5.02148 5.08206 5.15979 5.20850 5.23597 5.26480 5.37827 5.51698 5.57238 5.58889 5.67382 6.10224 6.33395 6.92715 7.05024 7.48660 7.66670 7.80580 9.06418 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011086 B = 0.003966 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.170274 B = 7058.264363 C = 7987.122254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.152 4.152 4 C -0.090 4.090 5 C -0.105 4.105 6 H 0.101 0.899 7 C -0.139 4.139 8 C 0.539 3.461 9 O -0.572 6.572 10 N -0.612 5.612 11 C 0.081 3.919 12 C 0.163 3.837 13 H 0.110 0.890 14 N -0.738 5.738 15 C -0.230 4.230 16 H 0.083 0.917 17 C -0.036 4.036 18 N -0.966 5.966 19 Si 0.930 3.070 20 H -0.291 1.291 21 H -0.292 1.292 22 H -0.274 1.274 23 C 0.113 3.887 24 H 0.148 0.852 25 N -0.271 5.271 26 C -0.036 4.036 27 C -0.060 4.060 28 N -0.311 5.311 29 N -0.117 5.117 30 C 0.113 3.887 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.086 0.914 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.093 0.907 44 H 0.068 0.932 45 H 0.365 0.635 46 H 0.259 0.741 47 H 0.210 0.790 48 H 0.219 0.781 49 H 0.113 0.887 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.538 -6.058 0.913 22.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.210 4.210 4 C -0.128 4.128 5 C -0.126 4.126 6 H 0.119 0.881 7 C -0.197 4.197 8 C 0.330 3.670 9 O -0.451 6.451 10 N -0.346 5.346 11 C -0.044 4.044 12 C 0.051 3.949 13 H 0.128 0.872 14 N -0.380 5.380 15 C -0.361 4.361 16 H 0.101 0.899 17 C -0.230 4.230 18 N -0.615 5.615 19 Si 0.761 3.239 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.200 1.200 23 C 0.010 3.990 24 H 0.166 0.834 25 N -0.065 5.065 26 C -0.188 4.188 27 C -0.218 4.218 28 N -0.176 5.176 29 N -0.096 5.096 30 C -0.011 4.011 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.105 0.895 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.111 0.889 44 H 0.087 0.913 45 H 0.199 0.801 46 H 0.069 0.931 47 H 0.226 0.774 48 H 0.235 0.765 49 H 0.131 0.869 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -20.353 -6.733 1.546 21.493 hybrid contribution -0.367 1.255 0.384 1.363 sum -20.720 -5.478 1.930 21.519 Atomic orbital electron populations 1.21824 0.94638 1.01887 1.02012 1.21148 0.96151 0.96233 0.97724 1.21930 1.01136 0.95860 1.02031 1.21454 0.91728 1.01095 0.98503 1.21406 0.98161 1.01285 0.91794 0.88092 1.21760 1.01621 0.99330 0.96967 1.20848 0.78512 0.81016 0.86642 1.90680 1.57853 1.33558 1.63018 1.48495 1.19449 1.46413 1.20260 1.23292 0.88782 0.92875 0.99488 1.21996 0.89738 0.91996 0.91149 0.87209 1.42655 1.44125 1.26352 1.24849 1.19044 1.11819 1.06303 0.98886 0.89911 1.25128 0.98813 1.00248 0.98810 1.69787 1.27475 1.32054 1.32210 0.85823 0.77863 0.80227 0.80007 1.21781 1.21796 1.19989 1.23371 1.00508 0.82517 0.92612 0.83443 1.47506 1.09805 1.19733 1.29456 1.23966 0.95773 0.93897 1.05129 1.24190 0.94285 1.02494 1.00829 1.75054 1.12178 1.08745 1.21643 1.78340 1.16359 1.07600 1.07257 1.22169 0.90712 1.01014 0.87212 0.92905 0.91950 0.92602 0.90176 0.92824 0.92658 0.92121 0.91761 0.92418 0.89516 0.92450 0.92194 0.88870 0.91347 0.80064 0.93118 0.77371 0.76452 0.86912 0.89497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.19 71.98 0.66 -1.14 16 2 C -0.09 -1.28 2.78 -10.79 -0.03 -1.31 16 3 C -0.15 -2.10 8.95 71.98 0.64 -1.46 16 4 C -0.09 -1.51 3.73 30.59 0.11 -1.39 16 5 C -0.11 -1.89 2.02 -11.54 -0.02 -1.91 16 6 H 0.10 1.71 5.34 -2.39 -0.01 1.70 16 7 C -0.14 -2.27 8.80 71.98 0.63 -1.64 16 8 C 0.54 12.22 6.84 87.66 0.60 12.82 16 9 O -0.57 -16.47 16.71 -3.04 -0.05 -16.52 16 10 N -0.61 -12.90 3.33 -810.83 -2.70 -15.60 16 11 C 0.08 1.98 5.44 87.02 0.47 2.45 16 12 C 0.16 4.82 3.60 46.55 0.17 4.99 16 13 H 0.11 3.13 8.09 -2.38 -0.02 3.11 16 14 N -0.74 -30.78 5.02 -315.58 -1.59 -32.36 16 15 C -0.23 -11.81 10.44 84.03 0.88 -10.93 16 16 H 0.08 4.44 8.06 -2.91 -0.02 4.42 16 17 C -0.04 -2.06 5.50 84.86 0.47 -1.59 16 18 N -0.97 -58.83 13.97 21.65 0.30 -58.53 16 19 Si 0.93 47.15 27.74 68.60 1.90 49.06 16 20 H -0.29 -15.22 7.11 99.48 0.71 -14.52 16 21 H -0.29 -14.75 7.11 99.48 0.71 -14.04 16 22 H -0.27 -13.42 6.52 99.48 0.65 -12.78 16 23 C 0.11 2.76 3.96 46.18 0.18 2.94 16 24 H 0.15 3.25 8.14 -2.39 -0.02 3.23 16 25 N -0.27 -7.92 2.31 -321.54 -0.74 -8.66 16 26 C -0.04 -0.91 9.26 83.49 0.77 -0.13 16 27 C -0.06 -1.65 12.05 83.73 1.01 -0.64 16 28 N -0.31 -11.30 12.41 -58.25 -0.72 -12.02 16 29 N -0.12 -4.30 12.43 37.02 0.46 -3.84 16 30 C 0.11 2.21 5.92 86.73 0.51 2.72 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.08 1.01 6.46 -2.39 -0.02 1.00 16 35 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.05 0.81 6.46 -2.38 -0.02 0.80 16 37 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.06 1.21 8.02 -2.39 -0.02 1.19 16 39 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.09 1.14 6.72 -2.39 -0.02 1.13 16 41 H 0.06 1.00 7.97 -2.39 -0.02 0.98 16 42 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 43 H 0.09 2.21 7.50 -2.38 -0.02 2.19 16 44 H 0.07 1.76 7.40 -2.38 -0.02 1.74 16 45 H 0.36 16.11 3.97 -92.71 -0.37 15.74 16 46 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 47 H 0.21 3.89 7.70 -2.91 -0.02 3.86 16 48 H 0.22 4.14 8.06 -2.91 -0.02 4.11 16 49 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 50 H 0.09 1.65 7.29 -2.38 -0.02 1.63 16 Total: -1.00 -71.77 393.76 4.44 -67.33 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: 0.51 Total: 27.37 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 7.06 Total: 3.78 kcal Atomic # 7 Polarization: -126.03 SS G_CDS: -4.99 Total: -131.01 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.05 Total: -16.52 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 1.90 Total: 49.06 kcal Total: -71.77 4.44 -67.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130059469.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.820 kcal (2) G-P(sol) polarization free energy of solvation -71.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.44 seconds