Wall clock time and date at job start Tue Mar 31 2020 23:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.70197 * 2 1 4 4 C 1.53189 * 109.58890 * 120.35647 * 2 1 3 5 5 C 1.53042 * 109.31257 * 174.41849 * 4 2 1 6 6 C 1.53033 * 109.54020 * 298.63730 * 5 4 2 7 7 H 1.08998 * 109.49774 * 181.34366 * 6 5 4 8 8 N 1.46498 * 109.49904 * 301.41143 * 6 5 4 9 9 C 1.34779 * 120.00236 * 204.99924 * 8 6 5 10 10 O 1.21290 * 119.99680 * 0.02562 * 9 8 6 11 11 C 1.50690 * 120.00284 * 180.02562 * 9 8 6 12 12 C 1.53005 * 109.47500 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47290 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.46812 * 180.02562 * 13 12 11 15 15 C 1.50705 * 109.46870 * 179.97438 * 14 13 12 16 16 C 1.35348 * 126.90776 * 85.00311 * 15 14 13 17 17 N 1.33776 * 106.49496 * 179.97438 * 16 15 14 18 18 N 1.28634 * 108.88410 * 359.97438 * 17 16 15 19 19 N 1.28712 * 110.17809 * 359.76081 * 18 17 16 20 20 H 0.97009 * 125.86882 * 180.23527 * 19 18 17 21 21 C 1.53195 * 109.31136 * 61.36395 * 6 5 4 22 22 N 1.46918 * 108.77694 * 305.36324 * 21 6 5 23 23 C 1.36941 * 120.63230 * 233.58762 * 22 21 6 24 24 H 1.08001 * 119.99701 * 150.20812 * 23 22 21 25 25 C 1.38806 * 119.99785 * 330.20682 * 23 22 21 26 26 N 1.31617 * 120.00234 * 344.47421 * 25 23 22 27 27 Si 1.86810 * 119.99977 * 164.47191 * 25 23 22 28 28 H 1.48497 * 109.46638 * 0.02562 * 27 25 23 29 29 H 1.48498 * 109.46924 * 119.99761 * 27 25 23 30 30 H 1.48491 * 109.46981 * 240.00176 * 27 25 23 31 31 H 1.09000 * 109.46545 * 299.64055 * 1 2 3 32 32 H 1.08989 * 109.47116 * 59.64125 * 1 2 3 33 33 H 1.09002 * 109.46958 * 179.64580 * 1 2 3 34 34 H 1.09004 * 109.49693 * 54.47177 * 4 2 1 35 35 H 1.08995 * 109.50151 * 294.37559 * 4 2 1 36 36 H 1.09005 * 109.45726 * 178.61447 * 5 4 2 37 37 H 1.08998 * 109.44359 * 58.65592 * 5 4 2 38 38 H 0.96995 * 119.99923 * 25.00350 * 8 6 5 39 39 H 1.09004 * 109.47380 * 59.99879 * 11 9 8 40 40 H 1.08996 * 109.47502 * 300.00192 * 11 9 8 41 41 H 1.09004 * 109.46849 * 59.99620 * 12 11 9 42 42 H 1.08996 * 109.46954 * 300.00593 * 12 11 9 43 43 H 1.08995 * 109.47218 * 60.00165 * 13 12 11 44 44 H 1.08995 * 109.47278 * 299.99826 * 13 12 11 45 45 H 1.08994 * 109.47497 * 299.99786 * 14 13 12 46 46 H 1.08995 * 109.47158 * 60.00050 * 14 13 12 47 47 H 1.08001 * 126.75835 * 359.97438 * 16 15 14 48 48 H 1.08997 * 109.58630 * 65.15364 * 21 6 5 49 49 H 1.09003 * 109.58468 * 185.57680 * 21 6 5 50 50 H 0.97000 * 120.00129 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0437 -0.7294 1.2454 5 6 3.5676 -0.8480 1.1700 6 6 3.9570 -1.6657 -0.0636 7 1 5.0412 -1.7700 -0.1036 8 7 3.3406 -2.9924 0.0146 9 6 3.8971 -4.0334 -0.6358 10 8 4.9085 -3.8719 -1.2856 11 6 3.2628 -5.3980 -0.5558 12 6 4.0861 -6.3922 -1.3773 13 6 3.4425 -7.7777 -1.2956 14 6 4.2662 -8.7719 -2.1166 15 6 3.6325 -10.1369 -2.0355 16 6 2.6272 -10.6134 -2.8064 17 7 2.3865 -11.8611 -2.3881 18 7 3.1899 -12.1388 -1.4227 19 7 3.9584 -11.1348 -1.1819 20 1 4.6506 -11.0988 -0.5031 21 6 3.4650 -0.9468 -1.3238 22 7 2.0226 -0.6995 -1.1945 23 6 1.1537 -1.1126 -2.1691 24 1 0.1395 -1.3792 -1.9106 25 6 1.5765 -1.1887 -3.4890 26 7 2.6873 -0.5881 -3.8599 27 14 0.5688 -2.1437 -4.7389 28 1 -0.6269 -2.7207 -4.0738 29 1 0.1368 -1.2309 -5.8277 30 1 1.3952 -3.2379 -5.3089 31 1 -0.3632 0.5083 0.8932 32 1 -0.3633 0.5193 -0.8867 33 1 -0.3633 -1.0277 -0.0064 34 1 1.6031 -1.7254 1.2912 35 1 1.7662 -0.1669 2.1368 36 1 3.9379 -1.3449 2.0667 37 1 4.0060 0.1474 1.0991 38 1 2.5320 -3.1216 0.5345 39 1 2.2487 -5.3512 -0.9528 40 1 3.2312 -5.7237 0.4839 41 1 5.1004 -6.4391 -0.9808 42 1 4.1173 -6.0663 -2.4170 43 1 2.4282 -7.7311 -1.6919 44 1 3.4117 -8.1033 -0.2558 45 1 4.2973 -8.4466 -3.1564 46 1 5.2803 -8.8184 -1.7199 47 1 2.1192 -10.0894 -3.6025 48 1 3.9903 0.0021 -1.4318 49 1 3.6518 -1.5716 -2.1973 50 1 2.9826 -0.6410 -4.7824 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132212418.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:31 Heat of formation + Delta-G solvation = 53.783328 kcal Electronic energy + Delta-G solvation = -29381.387985 eV Core-core repulsion = 25445.392316 eV Total energy + Delta-G solvation = -3935.995668 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 3.96 seconds Orbital eigenvalues (eV) -43.56159 -39.52865 -37.71982 -36.02915 -34.09099 -33.61318 -32.73733 -32.51471 -30.77087 -29.92125 -29.05977 -26.31914 -25.27303 -24.73721 -23.23753 -22.27625 -22.15781 -21.40003 -20.55291 -20.07314 -18.72589 -18.46668 -16.84378 -16.32638 -16.22138 -15.96034 -15.44584 -15.02254 -14.76339 -14.56488 -14.27060 -14.00674 -13.93418 -13.52658 -13.29818 -13.06727 -12.74180 -12.67904 -12.51756 -12.25909 -11.89646 -11.72953 -11.43466 -11.30871 -11.23620 -11.17900 -11.06034 -10.96789 -10.87486 -10.84505 -10.73477 -10.66935 -10.39333 -10.32850 -9.97543 -9.55722 -9.47429 -9.43168 -9.21122 -8.46353 -8.33121 -6.60044 -5.75987 -3.20568 1.26796 2.29109 2.44605 3.22034 3.36141 3.43221 3.45465 3.75656 4.14414 4.37585 4.48735 4.63903 4.70921 4.93762 5.00819 5.11692 5.27257 5.29812 5.31770 5.35015 5.36986 5.43001 5.49580 5.58059 5.63031 5.65605 5.76768 5.80743 5.88574 5.99828 6.09766 6.14583 6.17734 6.31393 6.32418 6.33324 6.43048 6.51643 6.52863 6.59360 6.69476 6.90691 7.03777 7.11884 7.40116 7.68576 7.83034 8.14530 8.16977 8.48458 8.84606 9.22746 9.87212 10.43953 11.31920 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012250 B = 0.002711 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.165177 B =10324.359344 C =11477.694027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.130 4.130 5 C -0.118 4.118 6 C 0.118 3.882 7 H 0.073 0.927 8 N -0.702 5.702 9 C 0.511 3.489 10 O -0.550 6.550 11 C -0.140 4.140 12 C -0.102 4.102 13 C -0.115 4.115 14 C -0.051 4.051 15 C -0.001 4.001 16 C -0.049 4.049 17 N -0.266 5.266 18 N -0.089 5.089 19 N -0.392 5.392 20 H 0.447 0.553 21 C 0.163 3.837 22 N -0.582 5.582 23 C -0.250 4.250 24 H 0.068 0.932 25 C 0.006 3.994 26 N -0.898 5.898 27 Si 0.894 3.106 28 H -0.278 1.278 29 H -0.291 1.291 30 H -0.289 1.289 31 H 0.036 0.964 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.069 0.931 38 H 0.394 0.606 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.061 0.939 45 H 0.099 0.901 46 H 0.080 0.920 47 H 0.191 0.809 48 H 0.023 0.977 49 H 0.095 0.905 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.011 -11.770 10.242 15.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.041 0.959 4 C -0.169 4.169 5 C -0.157 4.157 6 C 0.012 3.988 7 H 0.091 0.909 8 N -0.352 5.352 9 C 0.297 3.703 10 O -0.429 6.429 11 C -0.180 4.180 12 C -0.140 4.140 13 C -0.153 4.153 14 C -0.090 4.090 15 C -0.135 4.135 16 C -0.206 4.206 17 N -0.134 5.134 18 N -0.069 5.069 19 N -0.113 5.113 20 H 0.292 0.708 21 C 0.036 3.964 22 N -0.306 5.306 23 C -0.380 4.380 24 H 0.085 0.915 25 C -0.193 4.193 26 N -0.542 5.542 27 Si 0.725 3.275 28 H -0.203 1.203 29 H -0.218 1.218 30 H -0.216 1.216 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.228 0.772 39 H 0.111 0.889 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.080 0.920 45 H 0.117 0.883 46 H 0.098 0.902 47 H 0.208 0.792 48 H 0.041 0.959 49 H 0.113 0.887 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.305 -13.106 9.891 16.749 hybrid contribution -0.184 0.703 -0.348 0.805 sum 3.122 -12.404 9.543 15.958 Atomic orbital electron populations 1.21789 0.96128 1.01225 1.00121 1.20465 0.92866 0.93624 0.87247 0.95853 1.22059 0.95159 1.00637 0.99049 1.21687 0.96995 1.00135 0.96840 1.21740 0.96850 0.82133 0.98061 0.90863 1.45873 1.29304 1.08667 1.51378 1.20435 0.84583 0.86224 0.79055 1.90671 1.25663 1.85417 1.41135 1.21631 1.01396 0.93113 1.01893 1.21303 0.98976 0.92073 1.01676 1.21636 0.99848 0.94197 0.99665 1.20250 0.98721 0.86525 1.03515 1.22443 1.01292 0.94267 0.95533 1.23482 0.99845 0.93197 1.04062 1.75100 1.17711 1.14339 1.06204 1.78281 1.02846 1.11440 1.14300 1.45136 1.28269 1.10196 1.27658 0.70814 1.21154 0.83740 0.96958 0.94511 1.44044 1.02700 1.64807 1.19010 1.19106 0.94978 1.37902 0.86016 0.91474 1.25073 0.97742 0.99485 0.96989 1.70002 1.23952 1.43630 1.16612 0.86352 0.79576 0.79812 0.81805 1.20337 1.21794 1.21586 0.94471 0.92084 0.92955 0.92686 0.92961 0.93163 0.91251 0.77154 0.88873 0.89787 0.91249 0.90568 0.90929 0.92038 0.88263 0.90189 0.79155 0.95885 0.88687 0.93742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 7.95 37.16 0.30 -2.08 16 2 C 0.16 3.15 3.50 -67.60 -0.24 2.91 16 3 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.13 -1.98 5.21 -26.61 -0.14 -2.12 16 5 C -0.12 -1.80 5.59 -26.69 -0.15 -1.95 16 6 C 0.12 2.16 2.81 -67.81 -0.19 1.97 16 7 H 0.07 1.40 7.58 -51.93 -0.39 1.00 16 8 N -0.70 -11.66 4.92 -53.69 -0.26 -11.92 16 9 C 0.51 8.69 7.80 -10.99 -0.09 8.61 16 10 O -0.55 -11.50 15.64 5.55 0.09 -11.42 16 11 C -0.14 -1.69 5.70 -27.89 -0.16 -1.85 16 12 C -0.10 -1.10 4.50 -26.73 -0.12 -1.23 16 13 C -0.12 -0.90 5.20 -26.73 -0.14 -1.04 16 14 C -0.05 -0.34 5.78 -27.88 -0.16 -0.50 16 15 C 0.00 -0.01 6.56 -82.09 -0.54 -0.55 16 16 C -0.05 -0.48 11.99 -17.74 -0.21 -0.70 16 17 N -0.27 -3.35 12.41 30.24 0.38 -2.98 16 18 N -0.09 -1.01 13.38 60.35 0.81 -0.20 16 19 N -0.39 -3.08 6.98 33.54 0.23 -2.84 16 20 H 0.45 1.82 8.96 -190.40 -1.71 0.11 16 21 C 0.16 3.78 4.88 -3.71 -0.02 3.76 16 22 N -0.58 -13.41 2.90 -164.78 -0.48 -13.89 16 23 C -0.25 -6.41 8.58 -15.06 -0.13 -6.54 16 24 H 0.07 1.69 6.23 -52.49 -0.33 1.36 16 25 C 0.01 0.17 4.94 -17.43 -0.09 0.08 16 26 N -0.90 -25.88 11.23 55.49 0.62 -25.26 16 27 Si 0.89 21.34 29.58 -169.99 -5.03 16.31 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 29 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 30 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 1.18 7.67 -51.93 -0.40 0.79 16 33 H 0.05 0.92 7.40 -51.93 -0.38 0.53 16 34 H 0.05 0.81 6.40 -51.93 -0.33 0.48 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.39 5.79 6.77 -40.82 -0.28 5.51 16 39 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 42 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.19 1.45 8.06 -52.49 -0.42 1.02 16 48 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 49 H 0.09 2.61 6.15 -51.93 -0.32 2.29 16 50 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 396.76 15.07 5.98 5.98 Total: -1.00 -33.62 396.76 -9.34 -42.96 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -9.61 Total: 4.46 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -2.07 Total: -1.20 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: 1.30 Total: -57.09 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.09 Total: -11.42 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.62 -9.34 -42.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132212418.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.743 kcal (2) G-P(sol) polarization free energy of solvation -33.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.96 seconds