Wall clock time and date at job start Tue Mar 31 2020 23:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.70197 * 2 1 4 4 C 1.53189 * 109.58890 * 120.35647 * 2 1 3 5 5 C 1.53042 * 109.31257 * 174.41849 * 4 2 1 6 6 C 1.53033 * 109.54020 * 298.63730 * 5 4 2 7 7 H 1.08998 * 109.49774 * 181.34366 * 6 5 4 8 8 N 1.46498 * 109.49904 * 301.41143 * 6 5 4 9 9 C 1.34779 * 120.00236 * 204.99924 * 8 6 5 10 10 O 1.21290 * 119.99680 * 0.02562 * 9 8 6 11 11 C 1.50690 * 120.00284 * 180.02562 * 9 8 6 12 12 C 1.53005 * 109.47500 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47290 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.46812 * 180.02562 * 13 12 11 15 15 C 1.50705 * 109.46870 * 179.97438 * 14 13 12 16 16 C 1.35348 * 126.90776 * 85.00311 * 15 14 13 17 17 N 1.33776 * 106.49496 * 179.97438 * 16 15 14 18 18 N 1.28634 * 108.88410 * 359.97438 * 17 16 15 19 19 N 1.28712 * 110.17809 * 359.76081 * 18 17 16 20 20 H 0.97009 * 125.86882 * 180.23527 * 19 18 17 21 21 C 1.53195 * 109.31136 * 61.36395 * 6 5 4 22 22 N 1.46918 * 108.77694 * 305.36324 * 21 6 5 23 23 C 1.36941 * 120.63230 * 233.58762 * 22 21 6 24 24 H 1.08001 * 119.99701 * 150.20812 * 23 22 21 25 25 C 1.38806 * 119.99785 * 330.20682 * 23 22 21 26 26 N 1.31617 * 120.00234 * 344.47421 * 25 23 22 27 27 Si 1.86810 * 119.99977 * 164.47191 * 25 23 22 28 28 H 1.48497 * 109.46638 * 0.02562 * 27 25 23 29 29 H 1.48498 * 109.46924 * 119.99761 * 27 25 23 30 30 H 1.48491 * 109.46981 * 240.00176 * 27 25 23 31 31 H 1.09000 * 109.46545 * 299.64055 * 1 2 3 32 32 H 1.08989 * 109.47116 * 59.64125 * 1 2 3 33 33 H 1.09002 * 109.46958 * 179.64580 * 1 2 3 34 34 H 1.09004 * 109.49693 * 54.47177 * 4 2 1 35 35 H 1.08995 * 109.50151 * 294.37559 * 4 2 1 36 36 H 1.09005 * 109.45726 * 178.61447 * 5 4 2 37 37 H 1.08998 * 109.44359 * 58.65592 * 5 4 2 38 38 H 0.96995 * 119.99923 * 25.00350 * 8 6 5 39 39 H 1.09004 * 109.47380 * 59.99879 * 11 9 8 40 40 H 1.08996 * 109.47502 * 300.00192 * 11 9 8 41 41 H 1.09004 * 109.46849 * 59.99620 * 12 11 9 42 42 H 1.08996 * 109.46954 * 300.00593 * 12 11 9 43 43 H 1.08995 * 109.47218 * 60.00165 * 13 12 11 44 44 H 1.08995 * 109.47278 * 299.99826 * 13 12 11 45 45 H 1.08994 * 109.47497 * 299.99786 * 14 13 12 46 46 H 1.08995 * 109.47158 * 60.00050 * 14 13 12 47 47 H 1.08001 * 126.75835 * 359.97438 * 16 15 14 48 48 H 1.08997 * 109.58630 * 65.15364 * 21 6 5 49 49 H 1.09003 * 109.58468 * 185.57680 * 21 6 5 50 50 H 0.97000 * 120.00129 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0437 -0.7294 1.2454 5 6 3.5676 -0.8480 1.1700 6 6 3.9570 -1.6657 -0.0636 7 1 5.0412 -1.7700 -0.1036 8 7 3.3406 -2.9924 0.0146 9 6 3.8971 -4.0334 -0.6358 10 8 4.9085 -3.8719 -1.2856 11 6 3.2628 -5.3980 -0.5558 12 6 4.0861 -6.3922 -1.3773 13 6 3.4425 -7.7777 -1.2956 14 6 4.2662 -8.7719 -2.1166 15 6 3.6325 -10.1369 -2.0355 16 6 2.6272 -10.6134 -2.8064 17 7 2.3865 -11.8611 -2.3881 18 7 3.1899 -12.1388 -1.4227 19 7 3.9584 -11.1348 -1.1819 20 1 4.6506 -11.0988 -0.5031 21 6 3.4650 -0.9468 -1.3238 22 7 2.0226 -0.6995 -1.1945 23 6 1.1537 -1.1126 -2.1691 24 1 0.1395 -1.3792 -1.9106 25 6 1.5765 -1.1887 -3.4890 26 7 2.6873 -0.5881 -3.8599 27 14 0.5688 -2.1437 -4.7389 28 1 -0.6269 -2.7207 -4.0738 29 1 0.1368 -1.2309 -5.8277 30 1 1.3952 -3.2379 -5.3089 31 1 -0.3632 0.5083 0.8932 32 1 -0.3633 0.5193 -0.8867 33 1 -0.3633 -1.0277 -0.0064 34 1 1.6031 -1.7254 1.2912 35 1 1.7662 -0.1669 2.1368 36 1 3.9379 -1.3449 2.0667 37 1 4.0060 0.1474 1.0991 38 1 2.5320 -3.1216 0.5345 39 1 2.2487 -5.3512 -0.9528 40 1 3.2312 -5.7237 0.4839 41 1 5.1004 -6.4391 -0.9808 42 1 4.1173 -6.0663 -2.4170 43 1 2.4282 -7.7311 -1.6919 44 1 3.4117 -8.1033 -0.2558 45 1 4.2973 -8.4466 -3.1564 46 1 5.2803 -8.8184 -1.7199 47 1 2.1192 -10.0894 -3.6025 48 1 3.9903 0.0021 -1.4318 49 1 3.6518 -1.5716 -2.1973 50 1 2.9826 -0.6410 -4.7824 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132212418.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:27 Heat of formation + Delta-G solvation = 30.524143 kcal Electronic energy + Delta-G solvation = -29382.396579 eV Core-core repulsion = 25445.392316 eV Total energy + Delta-G solvation = -3937.004262 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 15.61 seconds Orbital eigenvalues (eV) -44.28034 -40.93754 -39.19799 -36.82588 -35.68320 -34.46004 -34.37358 -33.38773 -32.11663 -31.70940 -29.92960 -27.84649 -26.83192 -25.84048 -23.99442 -23.86777 -23.07530 -22.20846 -21.95286 -21.31159 -20.31141 -19.15527 -18.26585 -17.93593 -17.13636 -16.99383 -16.86846 -16.42557 -15.82736 -15.59749 -15.51142 -15.37244 -15.14066 -14.93919 -14.66503 -14.47126 -14.02751 -13.82094 -13.54429 -13.52549 -13.03374 -12.96103 -12.83166 -12.60879 -12.57647 -12.48821 -12.38667 -12.22271 -12.09572 -12.06465 -12.01081 -11.81168 -11.59197 -11.55475 -11.42508 -11.18200 -11.02314 -10.68944 -10.49460 -10.11355 -9.82847 -8.53915 -7.79097 -5.25137 0.58062 1.43724 1.46144 1.52789 1.54881 1.88523 1.89650 2.51083 2.54303 3.36735 3.49644 3.66021 3.73485 3.92205 3.98722 4.02710 4.11135 4.13192 4.19054 4.21487 4.38625 4.52161 4.53806 4.59787 4.65319 4.70272 4.76377 4.82974 4.85384 4.89183 4.98776 5.01218 5.07062 5.12727 5.13497 5.15848 5.21462 5.29498 5.35571 5.38875 5.50498 5.58888 5.64201 5.74200 5.77359 5.84347 6.01121 6.47429 6.83381 7.21800 7.42605 7.54115 7.95860 8.47330 9.26188 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012250 B = 0.002711 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.165177 B =10324.359344 C =11477.694027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.152 3.848 3 H 0.009 0.991 4 C -0.117 4.117 5 C -0.110 4.110 6 C 0.128 3.872 7 H 0.060 0.940 8 N -0.696 5.696 9 C 0.499 3.501 10 O -0.597 6.597 11 C -0.132 4.132 12 C -0.098 4.098 13 C -0.104 4.104 14 C -0.046 4.046 15 C 0.014 3.986 16 C -0.064 4.064 17 N -0.304 5.304 18 N -0.115 5.115 19 N -0.375 5.375 20 H 0.463 0.537 21 C 0.173 3.827 22 N -0.593 5.593 23 C -0.235 4.235 24 H 0.077 0.923 25 C -0.056 4.056 26 N -0.938 5.938 27 Si 0.950 3.050 28 H -0.257 1.257 29 H -0.299 1.299 30 H -0.299 1.299 31 H 0.074 0.926 32 H 0.033 0.967 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.407 0.593 39 H 0.098 0.902 40 H 0.122 0.878 41 H 0.068 0.932 42 H 0.046 0.954 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.100 0.900 46 H 0.099 0.901 47 H 0.206 0.794 48 H -0.011 1.011 49 H 0.047 0.953 50 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.774 -12.867 13.472 18.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.047 3.953 3 H 0.026 0.974 4 C -0.156 4.156 5 C -0.148 4.148 6 C 0.021 3.979 7 H 0.078 0.922 8 N -0.346 5.346 9 C 0.288 3.712 10 O -0.479 6.479 11 C -0.172 4.172 12 C -0.136 4.136 13 C -0.143 4.143 14 C -0.085 4.085 15 C -0.121 4.121 16 C -0.222 4.222 17 N -0.171 5.171 18 N -0.094 5.094 19 N -0.098 5.098 20 H 0.311 0.689 21 C 0.046 3.954 22 N -0.317 5.317 23 C -0.365 4.365 24 H 0.095 0.905 25 C -0.250 4.250 26 N -0.586 5.586 27 Si 0.780 3.220 28 H -0.181 1.181 29 H -0.227 1.227 30 H -0.227 1.227 31 H 0.093 0.907 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.244 0.756 39 H 0.116 0.884 40 H 0.140 0.860 41 H 0.086 0.914 42 H 0.065 0.935 43 H 0.089 0.911 44 H 0.098 0.902 45 H 0.118 0.882 46 H 0.117 0.883 47 H 0.223 0.777 48 H 0.007 0.993 49 H 0.065 0.935 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 2.025 -14.227 13.201 19.513 hybrid contribution 0.235 1.174 -1.312 1.776 sum 2.260 -13.053 11.888 17.800 Atomic orbital electron populations 1.21717 0.94647 1.01458 1.00690 1.20780 0.94191 0.93059 0.87266 0.97358 1.21938 0.94660 1.01180 0.97853 1.21650 0.97310 0.99704 0.96161 1.21384 0.96107 0.83175 0.97188 0.92158 1.45815 1.29665 1.07824 1.51338 1.21434 0.84038 0.88000 0.77754 1.90653 1.27955 1.86359 1.42936 1.21690 1.00953 0.90030 1.04506 1.21240 0.99204 0.93483 0.99678 1.21518 0.99429 0.92377 1.00932 1.20257 0.99392 0.85176 1.03676 1.22552 1.00373 0.94516 0.94689 1.23895 1.00640 0.92756 1.04884 1.75060 1.18933 1.15864 1.07218 1.78211 1.03783 1.12662 1.14793 1.45150 1.27795 1.09342 1.27507 0.68855 1.20829 0.84166 0.94998 0.95419 1.44257 1.02193 1.65441 1.19833 1.19451 0.95355 1.35453 0.86283 0.90508 1.25778 0.98949 1.01281 0.99040 1.70185 1.26100 1.46180 1.16101 0.85446 0.78786 0.78147 0.79646 1.18131 1.22687 1.22657 0.90735 0.94804 0.92721 0.91450 0.89429 0.89620 0.91478 0.75621 0.88388 0.85954 0.91358 0.93479 0.91148 0.90248 0.88164 0.88255 0.77708 0.99282 0.93500 0.94934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.14 7.95 71.98 0.57 -3.57 16 2 C 0.15 5.55 3.50 44.98 0.16 5.71 16 3 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 4 C -0.12 -3.11 5.21 30.67 0.16 -2.95 16 5 C -0.11 -3.03 5.59 30.62 0.17 -2.86 16 6 C 0.13 4.65 2.81 45.07 0.13 4.78 16 7 H 0.06 2.35 7.58 -2.39 -0.02 2.33 16 8 N -0.70 -22.02 4.92 -442.18 -2.17 -24.19 16 9 C 0.50 16.62 7.80 87.65 0.68 17.31 16 10 O -0.60 -25.64 15.64 -3.06 -0.05 -25.69 16 11 C -0.13 -2.87 5.70 29.85 0.17 -2.70 16 12 C -0.10 -1.96 4.50 30.60 0.14 -1.82 16 13 C -0.10 -1.33 5.20 30.59 0.16 -1.17 16 14 C -0.05 -0.49 5.78 29.85 0.17 -0.32 16 15 C 0.01 0.19 6.56 41.36 0.27 0.47 16 16 C -0.06 -1.19 11.99 83.73 1.00 -0.19 16 17 N -0.30 -7.50 12.41 -58.25 -0.72 -8.22 16 18 N -0.11 -2.52 13.38 37.02 0.50 -2.02 16 19 N -0.37 -5.14 6.98 -47.79 -0.33 -5.48 16 20 H 0.46 2.63 8.96 -219.95 -1.97 0.66 16 21 C 0.17 8.35 4.88 86.37 0.42 8.77 16 22 N -0.59 -27.46 2.90 -675.23 -1.96 -29.42 16 23 C -0.23 -12.06 8.58 84.03 0.72 -11.34 16 24 H 0.08 3.76 6.23 -2.91 -0.02 3.74 16 25 C -0.06 -3.10 4.94 84.86 0.42 -2.68 16 26 N -0.94 -57.02 11.23 21.65 0.24 -56.77 16 27 Si 0.95 44.85 29.58 68.60 2.03 46.88 16 28 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 29 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 30 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 31 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.03 1.25 7.67 -2.39 -0.02 1.24 16 33 H 0.05 1.74 7.40 -2.39 -0.02 1.72 16 34 H 0.07 1.66 6.40 -2.39 -0.02 1.64 16 35 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 37 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.41 10.62 6.77 -92.71 -0.63 10.00 16 39 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.07 1.38 8.10 -2.39 -0.02 1.36 16 42 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 43 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.21 2.89 8.06 -2.91 -0.02 2.87 16 48 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 49 H 0.05 2.72 6.15 -2.39 -0.01 2.71 16 50 H 0.24 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -78.94 396.76 1.23 -77.71 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -1.65 Total: 19.76 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: 5.35 Total: 7.45 kcal Atomic # 7 Polarization: -121.66 SS G_CDS: -4.45 Total: -126.11 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.05 Total: -25.69 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -78.94 1.23 -77.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132212418.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.231 kcal (2) G-P(sol) polarization free energy of solvation -78.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 15.61 seconds