Wall clock time and date at job start Tue Mar 31 2020 23:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.58129 * 2 1 4 4 C 1.53183 * 109.58815 * 239.71479 * 2 1 3 5 5 C 1.53047 * 109.31414 * 185.57836 * 4 2 1 6 6 C 1.53034 * 109.53535 * 61.36475 * 5 4 2 7 7 H 1.09003 * 109.49775 * 178.65060 * 6 5 4 8 8 N 1.46507 * 109.50122 * 58.58836 * 6 5 4 9 9 C 1.34770 * 119.99978 * 154.99566 * 8 6 5 10 10 O 1.21281 * 120.00250 * 0.02562 * 9 8 6 11 11 C 1.50699 * 119.99826 * 180.02562 * 9 8 6 12 12 C 1.52999 * 109.47347 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.47203 * 180.02562 * 12 11 9 14 14 C 1.52995 * 109.46898 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47042 * 179.97438 * 14 13 12 16 16 C 1.35357 * 126.91065 * 84.99785 * 15 14 13 17 17 N 1.33776 * 106.49302 * 180.22638 * 16 15 14 18 18 N 1.28631 * 108.88757 * 359.56238 * 17 16 15 19 19 N 1.28717 * 110.17619 * 0.45429 * 18 17 16 20 20 H 0.97005 * 125.86708 * 179.70475 * 19 18 17 21 21 C 1.53190 * 109.31447 * 298.63825 * 6 5 4 22 22 N 1.46921 * 108.77974 * 54.63369 * 21 6 5 23 23 C 1.36942 * 120.63153 * 126.36945 * 22 21 6 24 24 H 1.07999 * 119.99742 * 209.03741 * 23 22 21 25 25 C 1.38803 * 119.99900 * 29.03567 * 23 22 21 26 26 N 1.31621 * 120.00330 * 15.01735 * 25 23 22 27 27 Si 1.86804 * 120.00304 * 195.01174 * 25 23 22 28 28 H 1.48503 * 109.46791 * 90.00337 * 27 25 23 29 29 H 1.48494 * 109.47460 * 210.00276 * 27 25 23 30 30 H 1.48495 * 109.46865 * 330.00781 * 27 25 23 31 31 H 1.08998 * 109.47225 * 180.28410 * 1 2 3 32 32 H 1.09002 * 109.47375 * 300.28390 * 1 2 3 33 33 H 1.09001 * 109.46962 * 60.28730 * 1 2 3 34 34 H 1.09006 * 109.50240 * 65.62559 * 4 2 1 35 35 H 1.09003 * 109.50338 * 305.53144 * 4 2 1 36 36 H 1.09002 * 109.45603 * 301.34427 * 5 4 2 37 37 H 1.08998 * 109.46184 * 181.38741 * 5 4 2 38 38 H 0.96997 * 119.99683 * 335.00412 * 8 6 5 39 39 H 1.09001 * 109.47184 * 60.00027 * 11 9 8 40 40 H 1.09004 * 109.47213 * 300.00064 * 11 9 8 41 41 H 1.09001 * 109.47180 * 59.99751 * 12 11 9 42 42 H 1.08996 * 109.47078 * 300.00142 * 12 11 9 43 43 H 1.08991 * 109.46965 * 60.00050 * 13 12 11 44 44 H 1.09005 * 109.46655 * 299.99626 * 13 12 11 45 45 H 1.08996 * 109.47804 * 59.99910 * 14 13 12 46 46 H 1.09010 * 109.47415 * 299.99450 * 14 13 12 47 47 H 1.07993 * 126.75275 * 359.96908 * 16 15 14 48 48 H 1.09002 * 109.58967 * 174.42903 * 21 6 5 49 49 H 1.09007 * 109.58793 * 294.84817 * 21 6 5 50 50 H 0.96998 * 120.00389 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7278 -1.2462 5 6 3.5676 -0.8465 -1.1711 6 6 3.9569 -1.6657 0.0615 7 1 5.0412 -1.7702 0.1013 8 7 3.3405 -2.9924 -0.0184 9 6 3.8971 -4.0342 0.6307 10 8 4.9079 -3.8734 1.2813 11 6 3.2634 -5.3990 0.5480 12 6 4.0865 -6.3941 1.3684 13 6 3.4435 -7.7799 1.2839 14 6 4.2663 -8.7747 2.1048 15 6 3.6326 -10.1395 2.0222 16 6 3.8193 -11.0651 1.0524 17 7 3.0603 -12.1169 1.3799 18 7 2.4516 -11.8632 2.4844 19 7 2.7631 -10.6865 2.9028 20 1 2.4313 -10.2643 3.7107 21 6 3.4650 -0.9486 1.3226 22 7 2.0225 -0.7010 1.1937 23 6 1.1535 -1.1161 2.1672 24 1 0.1359 -1.3705 1.9100 25 6 1.5806 -1.2100 3.4846 26 7 2.7036 -0.6322 3.8552 27 14 0.5615 -2.1564 4.7317 28 1 0.9959 -3.5764 4.7505 29 1 0.7520 -1.5627 6.0794 30 1 -0.8733 -2.0827 4.3565 31 1 -0.3633 -1.0276 0.0051 32 1 -0.3634 0.5182 0.8874 33 1 -0.3633 0.5094 -0.8926 34 1 1.7661 -0.1642 -2.1370 35 1 1.6030 -1.7237 -1.2935 36 1 4.0062 0.1488 -1.0990 37 1 3.9379 -1.3422 -2.0684 38 1 2.5320 -3.1210 -0.5385 39 1 3.2326 -5.7229 -0.4923 40 1 2.2490 -5.3532 0.9445 41 1 4.1170 -6.0700 2.4087 42 1 5.1010 -6.4400 0.9724 43 1 3.4135 -8.1036 0.2437 44 1 2.4289 -7.7342 1.6798 45 1 4.2960 -8.4508 3.1451 46 1 5.2812 -8.8205 1.7094 47 1 4.4528 -10.9712 0.1828 48 1 3.6518 -1.5744 2.1953 49 1 3.9902 0.0003 1.4318 50 1 3.0019 -0.6975 4.7758 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132212420.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:40 Heat of formation + Delta-G solvation = 53.720488 kcal Electronic energy + Delta-G solvation = -29393.407236 eV Core-core repulsion = 25457.408842 eV Total energy + Delta-G solvation = -3935.998393 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.55730 -39.52556 -37.72327 -36.02607 -34.09558 -33.60068 -32.75498 -32.51415 -30.77485 -29.92210 -29.05773 -26.32623 -25.28154 -24.74431 -23.22695 -22.27360 -22.15907 -21.39618 -20.55766 -20.07050 -18.72937 -18.45879 -16.84176 -16.32834 -16.21779 -15.96946 -15.46024 -14.97502 -14.77354 -14.65825 -14.22045 -14.02915 -13.94232 -13.53416 -13.30271 -13.05034 -12.79102 -12.66564 -12.50713 -12.19716 -12.00663 -11.65423 -11.45175 -11.30900 -11.24195 -11.18891 -11.07012 -10.96574 -10.88441 -10.84698 -10.76136 -10.66432 -10.40759 -10.35057 -9.98886 -9.56693 -9.47889 -9.43596 -9.20886 -8.47971 -8.33023 -6.62526 -5.77266 -3.21698 1.27833 2.28307 2.46896 3.22808 3.32695 3.39105 3.41568 3.76138 4.15027 4.37706 4.46184 4.62512 4.71395 4.93464 5.01178 5.12190 5.26392 5.29205 5.32435 5.34891 5.37221 5.43038 5.48975 5.57690 5.63388 5.67019 5.77114 5.79360 5.86660 5.99615 6.09537 6.13870 6.17801 6.30919 6.32392 6.32721 6.42471 6.51632 6.54263 6.58930 6.69395 6.90394 7.02434 7.11112 7.40260 7.69251 7.80821 8.15078 8.17336 8.46805 8.85218 9.21193 9.85703 10.41993 11.30413 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012204 B = 0.002724 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.866136 B =10278.049787 C =11440.888419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.130 4.130 5 C -0.119 4.119 6 C 0.118 3.882 7 H 0.074 0.926 8 N -0.702 5.702 9 C 0.511 3.489 10 O -0.550 6.550 11 C -0.140 4.140 12 C -0.102 4.102 13 C -0.115 4.115 14 C -0.051 4.051 15 C -0.001 4.001 16 C -0.051 4.051 17 N -0.268 5.268 18 N -0.087 5.087 19 N -0.390 5.390 20 H 0.448 0.552 21 C 0.162 3.838 22 N -0.582 5.582 23 C -0.249 4.249 24 H 0.068 0.932 25 C 0.005 3.995 26 N -0.899 5.899 27 Si 0.896 3.104 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.280 1.280 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.037 0.963 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.050 0.950 38 H 0.394 0.606 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.081 0.919 46 H 0.098 0.902 47 H 0.190 0.810 48 H 0.097 0.903 49 H 0.023 0.977 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.881 -11.215 -8.643 14.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.169 4.169 5 C -0.157 4.157 6 C 0.012 3.988 7 H 0.092 0.908 8 N -0.352 5.352 9 C 0.297 3.703 10 O -0.429 6.429 11 C -0.180 4.180 12 C -0.140 4.140 13 C -0.153 4.153 14 C -0.091 4.091 15 C -0.135 4.135 16 C -0.208 4.208 17 N -0.135 5.135 18 N -0.067 5.067 19 N -0.111 5.111 20 H 0.294 0.706 21 C 0.035 3.965 22 N -0.306 5.306 23 C -0.379 4.379 24 H 0.086 0.914 25 C -0.194 4.194 26 N -0.543 5.543 27 Si 0.727 3.273 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.206 1.206 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.228 0.772 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.100 0.900 46 H 0.116 0.884 47 H 0.207 0.793 48 H 0.116 0.884 49 H 0.041 0.959 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.868 -12.429 -7.846 14.816 hybrid contribution -0.548 0.820 0.838 1.294 sum 1.319 -11.609 -7.008 13.625 Atomic orbital electron populations 1.21796 0.96159 1.01210 1.00135 1.20457 0.92846 0.93639 0.87249 0.95832 1.22059 0.95191 1.00632 0.99018 1.21688 0.96962 1.00134 0.96882 1.21743 0.96871 0.82124 0.98048 0.90841 1.45871 1.29305 1.08641 1.51415 1.20428 0.84572 0.86215 0.79060 1.90668 1.25683 1.85438 1.41078 1.21632 1.01254 0.93130 1.02015 1.21301 0.99218 0.92019 1.01482 1.21637 0.99110 0.94224 1.00377 1.20252 0.99623 0.86633 1.02551 1.22452 0.98144 0.99567 0.93307 1.23430 1.04403 0.90873 1.02120 1.75087 1.08112 1.24311 1.05980 1.78293 1.20886 0.98543 1.09012 1.45170 1.31633 1.12851 1.21469 0.70641 1.21188 0.83635 0.97041 0.94617 1.44044 1.02740 1.64676 1.19119 1.19094 0.94636 1.37942 0.86223 0.91450 1.25056 0.97687 0.99708 0.96931 1.69984 1.23187 1.44308 1.16818 0.86384 0.79772 0.79863 0.81297 1.21695 1.21808 1.20552 0.92973 0.92107 0.94438 0.92947 0.92681 0.91258 0.93122 0.77167 0.89612 0.89071 0.90861 0.90958 0.91155 0.91823 0.90046 0.88380 0.79261 0.88443 0.95916 0.93691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 7.94 37.16 0.30 -2.08 16 2 C 0.16 3.14 3.50 -67.60 -0.24 2.91 16 3 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.13 -1.98 5.21 -26.61 -0.14 -2.11 16 5 C -0.12 -1.80 5.59 -26.69 -0.15 -1.95 16 6 C 0.12 2.17 2.81 -67.81 -0.19 1.98 16 7 H 0.07 1.40 7.58 -51.93 -0.39 1.01 16 8 N -0.70 -11.70 4.92 -53.69 -0.26 -11.96 16 9 C 0.51 8.74 7.80 -10.99 -0.09 8.65 16 10 O -0.55 -11.54 15.64 5.56 0.09 -11.45 16 11 C -0.14 -1.71 5.70 -27.88 -0.16 -1.86 16 12 C -0.10 -1.11 4.50 -26.73 -0.12 -1.24 16 13 C -0.12 -0.91 5.20 -26.73 -0.14 -1.05 16 14 C -0.05 -0.34 5.78 -27.89 -0.16 -0.50 16 15 C 0.00 0.00 6.56 -82.09 -0.54 -0.54 16 16 C -0.05 -0.48 11.99 -17.73 -0.21 -0.69 16 17 N -0.27 -3.31 12.41 30.24 0.38 -2.94 16 18 N -0.09 -1.02 13.38 60.35 0.81 -0.22 16 19 N -0.39 -3.31 6.98 33.54 0.23 -3.08 16 20 H 0.45 2.35 8.96 -190.40 -1.71 0.65 16 21 C 0.16 3.75 4.89 -3.71 -0.02 3.73 16 22 N -0.58 -13.40 2.91 -164.78 -0.48 -13.88 16 23 C -0.25 -6.36 8.61 -15.06 -0.13 -6.49 16 24 H 0.07 1.68 6.20 -52.49 -0.33 1.36 16 25 C 0.01 0.14 4.96 -17.43 -0.09 0.05 16 26 N -0.90 -25.83 11.14 55.49 0.62 -25.21 16 27 Si 0.90 21.26 29.58 -169.99 -5.03 16.23 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 29 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 30 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 31 H 0.05 0.91 7.40 -51.93 -0.38 0.53 16 32 H 0.06 1.18 7.66 -51.93 -0.40 0.78 16 33 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.81 6.40 -51.93 -0.33 0.48 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.39 5.80 6.77 -40.82 -0.28 5.52 16 39 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 42 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.10 0.56 8.14 -51.92 -0.42 0.14 16 47 H 0.19 1.21 8.06 -52.49 -0.42 0.79 16 48 H 0.10 2.67 6.06 -51.93 -0.31 2.36 16 49 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 50 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 396.61 15.07 5.98 5.98 Total: -1.00 -33.42 396.61 -9.35 -42.76 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -9.60 Total: 4.96 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -2.07 Total: -1.20 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: 1.29 Total: -57.28 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.09 Total: -11.45 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.42 -9.35 -42.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132212420.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.483 kcal (2) G-P(sol) polarization free energy of solvation -33.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds