Wall clock time and date at job start Tue Mar 31 2020 23:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.58129 * 2 1 4 4 C 1.53183 * 109.58815 * 239.71479 * 2 1 3 5 5 C 1.53047 * 109.31414 * 185.57836 * 4 2 1 6 6 C 1.53034 * 109.53535 * 61.36475 * 5 4 2 7 7 H 1.09003 * 109.49775 * 178.65060 * 6 5 4 8 8 N 1.46507 * 109.50122 * 58.58836 * 6 5 4 9 9 C 1.34770 * 119.99978 * 154.99566 * 8 6 5 10 10 O 1.21281 * 120.00250 * 0.02562 * 9 8 6 11 11 C 1.50699 * 119.99826 * 180.02562 * 9 8 6 12 12 C 1.52999 * 109.47347 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.47203 * 180.02562 * 12 11 9 14 14 C 1.52995 * 109.46898 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47042 * 179.97438 * 14 13 12 16 16 C 1.35357 * 126.91065 * 84.99785 * 15 14 13 17 17 N 1.33776 * 106.49302 * 180.22638 * 16 15 14 18 18 N 1.28631 * 108.88757 * 359.56238 * 17 16 15 19 19 N 1.28717 * 110.17619 * 0.45429 * 18 17 16 20 20 H 0.97005 * 125.86708 * 179.70475 * 19 18 17 21 21 C 1.53190 * 109.31447 * 298.63825 * 6 5 4 22 22 N 1.46921 * 108.77974 * 54.63369 * 21 6 5 23 23 C 1.36942 * 120.63153 * 126.36945 * 22 21 6 24 24 H 1.07999 * 119.99742 * 209.03741 * 23 22 21 25 25 C 1.38803 * 119.99900 * 29.03567 * 23 22 21 26 26 N 1.31621 * 120.00330 * 15.01735 * 25 23 22 27 27 Si 1.86804 * 120.00304 * 195.01174 * 25 23 22 28 28 H 1.48503 * 109.46791 * 90.00337 * 27 25 23 29 29 H 1.48494 * 109.47460 * 210.00276 * 27 25 23 30 30 H 1.48495 * 109.46865 * 330.00781 * 27 25 23 31 31 H 1.08998 * 109.47225 * 180.28410 * 1 2 3 32 32 H 1.09002 * 109.47375 * 300.28390 * 1 2 3 33 33 H 1.09001 * 109.46962 * 60.28730 * 1 2 3 34 34 H 1.09006 * 109.50240 * 65.62559 * 4 2 1 35 35 H 1.09003 * 109.50338 * 305.53144 * 4 2 1 36 36 H 1.09002 * 109.45603 * 301.34427 * 5 4 2 37 37 H 1.08998 * 109.46184 * 181.38741 * 5 4 2 38 38 H 0.96997 * 119.99683 * 335.00412 * 8 6 5 39 39 H 1.09001 * 109.47184 * 60.00027 * 11 9 8 40 40 H 1.09004 * 109.47213 * 300.00064 * 11 9 8 41 41 H 1.09001 * 109.47180 * 59.99751 * 12 11 9 42 42 H 1.08996 * 109.47078 * 300.00142 * 12 11 9 43 43 H 1.08991 * 109.46965 * 60.00050 * 13 12 11 44 44 H 1.09005 * 109.46655 * 299.99626 * 13 12 11 45 45 H 1.08996 * 109.47804 * 59.99910 * 14 13 12 46 46 H 1.09010 * 109.47415 * 299.99450 * 14 13 12 47 47 H 1.07993 * 126.75275 * 359.96908 * 16 15 14 48 48 H 1.09002 * 109.58967 * 174.42903 * 21 6 5 49 49 H 1.09007 * 109.58793 * 294.84817 * 21 6 5 50 50 H 0.96998 * 120.00389 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7278 -1.2462 5 6 3.5676 -0.8465 -1.1711 6 6 3.9569 -1.6657 0.0615 7 1 5.0412 -1.7702 0.1013 8 7 3.3405 -2.9924 -0.0184 9 6 3.8971 -4.0342 0.6307 10 8 4.9079 -3.8734 1.2813 11 6 3.2634 -5.3990 0.5480 12 6 4.0865 -6.3941 1.3684 13 6 3.4435 -7.7799 1.2839 14 6 4.2663 -8.7747 2.1048 15 6 3.6326 -10.1395 2.0222 16 6 3.8193 -11.0651 1.0524 17 7 3.0603 -12.1169 1.3799 18 7 2.4516 -11.8632 2.4844 19 7 2.7631 -10.6865 2.9028 20 1 2.4313 -10.2643 3.7107 21 6 3.4650 -0.9486 1.3226 22 7 2.0225 -0.7010 1.1937 23 6 1.1535 -1.1161 2.1672 24 1 0.1359 -1.3705 1.9100 25 6 1.5806 -1.2100 3.4846 26 7 2.7036 -0.6322 3.8552 27 14 0.5615 -2.1564 4.7317 28 1 0.9959 -3.5764 4.7505 29 1 0.7520 -1.5627 6.0794 30 1 -0.8733 -2.0827 4.3565 31 1 -0.3633 -1.0276 0.0051 32 1 -0.3634 0.5182 0.8874 33 1 -0.3633 0.5094 -0.8926 34 1 1.7661 -0.1642 -2.1370 35 1 1.6030 -1.7237 -1.2935 36 1 4.0062 0.1488 -1.0990 37 1 3.9379 -1.3422 -2.0684 38 1 2.5320 -3.1210 -0.5385 39 1 3.2326 -5.7229 -0.4923 40 1 2.2490 -5.3532 0.9445 41 1 4.1170 -6.0700 2.4087 42 1 5.1010 -6.4400 0.9724 43 1 3.4135 -8.1036 0.2437 44 1 2.4289 -7.7342 1.6798 45 1 4.2960 -8.4508 3.1451 46 1 5.2812 -8.8205 1.7094 47 1 4.4528 -10.9712 0.1828 48 1 3.6518 -1.5744 2.1953 49 1 3.9902 0.0003 1.4318 50 1 3.0019 -0.6975 4.7758 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132212420.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:17 Heat of formation + Delta-G solvation = 30.686899 kcal Electronic energy + Delta-G solvation = -29394.406047 eV Core-core repulsion = 25457.408842 eV Total energy + Delta-G solvation = -3936.997205 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 23.48 seconds Orbital eigenvalues (eV) -44.27364 -40.93888 -39.20252 -36.82626 -35.68831 -34.47381 -34.36059 -33.38728 -32.12062 -31.70516 -29.92676 -27.85332 -26.84170 -25.84150 -23.98104 -23.86545 -23.07022 -22.20859 -21.95615 -21.31370 -20.31391 -19.15345 -18.27337 -17.93964 -17.13894 -17.00221 -16.88728 -16.39695 -15.84999 -15.63813 -15.48683 -15.37269 -15.12717 -14.93596 -14.66892 -14.45910 -14.03642 -13.84093 -13.54347 -13.50751 -13.03389 -12.97221 -12.83377 -12.60334 -12.54897 -12.53408 -12.38254 -12.22755 -12.10353 -12.08085 -12.03772 -11.80484 -11.59628 -11.55856 -11.42803 -11.18889 -11.02706 -10.69187 -10.49448 -10.10496 -9.83058 -8.55608 -7.79630 -5.25555 0.58709 1.42305 1.43181 1.51817 1.55168 1.88383 1.89688 2.50356 2.53362 3.35496 3.49819 3.65463 3.73984 3.92610 3.98607 4.03577 4.10489 4.13100 4.19388 4.21510 4.40680 4.51656 4.52491 4.59802 4.66495 4.69896 4.76216 4.82741 4.85031 4.89989 4.98591 5.00523 5.06777 5.13284 5.13432 5.15730 5.23442 5.29145 5.35489 5.38074 5.50151 5.57846 5.64099 5.72920 5.77933 5.84333 5.97272 6.46208 6.83325 7.20672 7.43556 7.54082 7.95119 8.46096 9.25322 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012204 B = 0.002724 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.866136 B =10278.049787 C =11440.888419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.152 3.848 3 H 0.009 0.991 4 C -0.117 4.117 5 C -0.110 4.110 6 C 0.128 3.872 7 H 0.060 0.940 8 N -0.696 5.696 9 C 0.500 3.500 10 O -0.597 6.597 11 C -0.132 4.132 12 C -0.098 4.098 13 C -0.104 4.104 14 C -0.046 4.046 15 C 0.010 3.990 16 C -0.057 4.057 17 N -0.304 5.304 18 N -0.119 5.119 19 N -0.381 5.381 20 H 0.460 0.540 21 C 0.172 3.828 22 N -0.594 5.594 23 C -0.235 4.235 24 H 0.078 0.922 25 C -0.057 4.057 26 N -0.939 5.939 27 Si 0.952 3.048 28 H -0.290 1.290 29 H -0.304 1.304 30 H -0.263 1.263 31 H 0.054 0.946 32 H 0.033 0.967 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.407 0.593 39 H 0.124 0.876 40 H 0.095 0.905 41 H 0.044 0.956 42 H 0.070 0.930 43 H 0.087 0.913 44 H 0.061 0.939 45 H 0.085 0.915 46 H 0.113 0.887 47 H 0.216 0.784 48 H 0.049 0.951 49 H -0.011 1.011 50 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.523 -12.240 -11.690 16.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.047 3.953 3 H 0.027 0.973 4 C -0.156 4.156 5 C -0.148 4.148 6 C 0.021 3.979 7 H 0.078 0.922 8 N -0.346 5.346 9 C 0.288 3.712 10 O -0.479 6.479 11 C -0.172 4.172 12 C -0.136 4.136 13 C -0.142 4.142 14 C -0.085 4.085 15 C -0.125 4.125 16 C -0.215 4.215 17 N -0.170 5.170 18 N -0.098 5.098 19 N -0.103 5.103 20 H 0.308 0.692 21 C 0.044 3.956 22 N -0.317 5.317 23 C -0.365 4.365 24 H 0.095 0.905 25 C -0.251 4.251 26 N -0.586 5.586 27 Si 0.782 3.218 28 H -0.217 1.217 29 H -0.232 1.232 30 H -0.188 1.188 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.244 0.756 39 H 0.142 0.858 40 H 0.114 0.886 41 H 0.062 0.938 42 H 0.089 0.911 43 H 0.106 0.894 44 H 0.080 0.920 45 H 0.104 0.896 46 H 0.132 0.868 47 H 0.233 0.767 48 H 0.068 0.932 49 H 0.007 0.993 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 0.441 -13.470 -10.933 17.354 hybrid contribution -0.100 1.275 1.755 2.171 sum 0.340 -12.195 -9.179 15.267 Atomic orbital electron populations 1.21723 0.94673 1.01447 1.00698 1.20772 0.94177 0.93080 0.87263 0.97301 1.21940 0.94674 1.01177 0.97844 1.21652 0.97296 0.99700 0.96190 1.21391 0.96113 0.83164 0.97208 0.92161 1.45814 1.29660 1.07807 1.51360 1.21424 0.84036 0.87990 0.77775 1.90650 1.27967 1.86376 1.42880 1.21691 1.00782 0.90069 1.04635 1.21240 0.99433 0.93444 0.99477 1.21523 0.98704 0.92387 1.01630 1.20267 1.00038 0.85364 1.02862 1.22635 0.97407 0.99744 0.92677 1.23961 1.04179 0.90222 1.03128 1.75047 1.09355 1.25937 1.06652 1.78241 1.22086 0.99944 1.09549 1.45231 1.31114 1.12171 1.21810 0.69217 1.20862 0.84085 0.95076 0.95533 1.44257 1.02224 1.65305 1.19953 1.19444 0.95054 1.35553 0.86492 0.90474 1.25766 0.98894 1.01501 0.98986 1.70178 1.25317 1.46854 1.16267 0.85474 0.79311 0.78372 0.78658 1.21685 1.23187 1.18757 0.92743 0.94817 0.90710 0.89413 0.91469 0.91467 0.89612 0.75636 0.85776 0.88644 0.93760 0.91099 0.89450 0.91997 0.89628 0.86836 0.76738 0.93205 0.99306 0.94943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.14 7.94 71.98 0.57 -3.56 16 2 C 0.15 5.54 3.50 44.97 0.16 5.70 16 3 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 4 C -0.12 -3.11 5.21 30.67 0.16 -2.95 16 5 C -0.11 -3.04 5.59 30.62 0.17 -2.87 16 6 C 0.13 4.66 2.81 45.06 0.13 4.78 16 7 H 0.06 2.35 7.58 -2.39 -0.02 2.34 16 8 N -0.70 -22.13 4.92 -442.17 -2.17 -24.31 16 9 C 0.50 16.74 7.80 87.66 0.68 17.42 16 10 O -0.60 -25.73 15.64 -3.03 -0.05 -25.78 16 11 C -0.13 -2.90 5.70 29.85 0.17 -2.73 16 12 C -0.10 -1.98 4.50 30.60 0.14 -1.84 16 13 C -0.10 -1.35 5.20 30.59 0.16 -1.19 16 14 C -0.05 -0.50 5.78 29.85 0.17 -0.33 16 15 C 0.01 0.15 6.56 41.36 0.27 0.42 16 16 C -0.06 -0.96 11.99 83.73 1.00 0.05 16 17 N -0.30 -7.26 12.41 -58.25 -0.72 -7.99 16 18 N -0.12 -2.71 13.38 37.02 0.50 -2.22 16 19 N -0.38 -5.96 6.98 -47.79 -0.33 -6.29 16 20 H 0.46 4.27 8.96 -219.95 -1.97 2.30 16 21 C 0.17 8.28 4.89 86.36 0.42 8.70 16 22 N -0.59 -27.43 2.91 -675.26 -1.96 -29.40 16 23 C -0.23 -12.03 8.61 84.03 0.72 -11.31 16 24 H 0.08 3.76 6.20 -2.91 -0.02 3.75 16 25 C -0.06 -3.15 4.96 84.86 0.42 -2.73 16 26 N -0.94 -56.86 11.14 21.65 0.24 -56.62 16 27 Si 0.95 44.59 29.58 68.60 2.03 46.62 16 28 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 29 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 30 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 31 H 0.05 1.72 7.40 -2.39 -0.02 1.71 16 32 H 0.03 1.25 7.66 -2.39 -0.02 1.23 16 33 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 35 H 0.07 1.65 6.40 -2.39 -0.02 1.64 16 36 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.41 10.69 6.77 -92.71 -0.63 10.06 16 39 H 0.12 1.80 8.14 -2.39 -0.02 1.79 16 40 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 41 H 0.04 1.15 8.10 -2.39 -0.02 1.13 16 42 H 0.07 1.46 8.10 -2.39 -0.02 1.44 16 43 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 45 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 47 H 0.22 2.15 8.06 -2.91 -0.02 2.13 16 48 H 0.05 2.89 6.06 -2.39 -0.01 2.88 16 49 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 50 H 0.24 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -78.35 396.61 1.23 -77.12 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: -1.65 Total: 21.29 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 5.35 Total: 7.57 kcal Atomic # 7 Polarization: -122.36 SS G_CDS: -4.46 Total: -126.81 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.05 Total: -25.78 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -78.35 1.23 -77.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132212420.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.805 kcal (2) G-P(sol) polarization free energy of solvation -78.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 23.48 seconds