Wall clock time and date at job start Tue Mar 31 2020 23:40:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.08997 * 109.58756 * 2 1
4 4 C 1.53190 * 109.70389 * 239.64509 * 2 1 3
5 5 C 1.53039 * 109.34133 * 185.52633 * 4 2 1
6 6 C 1.53044 * 109.53775 * 61.31457 * 5 4 2
7 7 H 1.08998 * 109.49806 * 58.65216 * 6 5 4
8 8 N 1.46503 * 109.49684 * 178.71771 * 6 5 4
9 9 C 1.34771 * 120.00183 * 205.21395 * 8 6 5
10 10 O 1.21282 * 120.00042 * 359.71807 * 9 8 6
11 11 C 1.50699 * 120.00095 * 179.72537 * 9 8 6
12 12 C 1.52996 * 109.47096 * 179.97438 * 11 9 8
13 13 C 1.53003 * 109.47495 * 180.02562 * 12 11 9
14 14 C 1.52996 * 109.47495 * 179.97438 * 13 12 11
15 15 C 1.50699 * 109.47096 * 179.97438 * 14 13 12
16 16 C 1.35346 * 126.91558 * 85.00043 * 15 14 13
17 17 N 1.33771 * 106.49858 * 179.97438 * 16 15 14
18 18 N 1.28629 * 108.88619 * 359.97438 * 17 16 15
19 19 N 1.28716 * 110.17925 * 359.76220 * 18 17 16
20 20 H 0.97005 * 125.87233 * 180.23629 * 19 18 17
21 21 C 1.53185 * 109.34008 * 298.68368 * 6 5 4
22 22 N 1.46926 * 108.77690 * 54.61978 * 21 6 5
23 23 C 1.36936 * 120.63288 * 126.41608 * 22 21 6
24 24 H 1.08001 * 120.00012 * 209.02763 * 23 22 21
25 25 C 1.38809 * 119.99840 * 29.01430 * 23 22 21
26 26 N 1.31619 * 120.00258 * 15.02013 * 25 23 22
27 27 Si 1.86805 * 119.99930 * 195.01519 * 25 23 22
28 28 H 1.48497 * 109.47362 * 90.00688 * 27 25 23
29 29 H 1.48510 * 109.46944 * 210.00312 * 27 25 23
30 30 H 1.48499 * 109.47135 * 330.00264 * 27 25 23
31 31 H 1.09002 * 109.46872 * 299.72097 * 1 2 3
32 32 H 1.09000 * 109.47327 * 59.71358 * 1 2 3
33 33 H 1.08999 * 109.47369 * 179.71980 * 1 2 3
34 34 H 1.09003 * 109.49834 * 305.45839 * 4 2 1
35 35 H 1.08996 * 109.49801 * 65.52210 * 4 2 1
36 36 H 1.09001 * 109.43417 * 301.30982 * 5 4 2
37 37 H 1.08997 * 109.48795 * 181.34880 * 5 4 2
38 38 H 0.97001 * 119.99582 * 24.93012 * 8 6 5
39 39 H 1.09004 * 109.46934 * 299.99158 * 11 9 8
40 40 H 1.08999 * 109.47221 * 59.99397 * 11 9 8
41 41 H 1.09008 * 109.47415 * 299.99447 * 12 11 9
42 42 H 1.08999 * 109.47408 * 59.99720 * 12 11 9
43 43 H 1.09008 * 109.46761 * 299.99909 * 13 12 11
44 44 H 1.08999 * 109.47106 * 59.99431 * 13 12 11
45 45 H 1.09004 * 109.46711 * 299.99399 * 14 13 12
46 46 H 1.08999 * 109.47408 * 59.99616 * 14 13 12
47 47 H 1.08003 * 126.75170 * 359.97438 * 16 15 14
48 48 H 1.09001 * 109.58842 * 174.40995 * 21 6 5
49 49 H 1.09001 * 109.58796 * 294.69230 * 21 6 5
50 50 H 0.97002 * 120.00251 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8954 1.0269 0.0000
4 6 2.0465 -0.7288 -1.2445
5 6 3.5705 -0.8451 -1.1678
6 6 3.9601 -1.6609 0.0671
7 1 3.5040 -2.6491 0.0090
8 7 5.4177 -1.7975 0.1229
9 6 5.9723 -2.8409 0.7710
10 8 5.2649 -3.6640 1.3124
11 6 7.4715 -2.9849 0.8231
12 6 7.8359 -4.2432 1.6135
13 6 9.3580 -4.3891 1.6670
14 6 9.7223 -5.6471 2.4579
15 6 11.2215 -5.7910 2.5100
16 6 12.0635 -5.2110 3.3969
17 7 13.2963 -5.6148 3.0703
18 7 13.2225 -6.3936 2.0493
19 7 11.9961 -6.5313 1.6835
20 1 11.6814 -7.0708 0.9413
21 6 3.4653 -0.9426 1.3264
22 7 2.0225 -0.6981 1.1954
23 6 1.1534 -1.1125 2.1690
24 1 0.1364 -1.3693 1.9114
25 6 1.5794 -1.2027 3.4870
26 7 2.7011 -0.6221 3.8573
27 14 0.5607 -2.1480 4.7353
28 1 0.9974 -3.5671 4.7578
29 1 0.7489 -1.5508 6.0819
30 1 -0.8740 -2.0775 4.3586
31 1 -0.3633 0.5095 0.8925
32 1 -0.3634 0.5183 -0.8874
33 1 -0.3634 -1.0276 -0.0050
34 1 1.6079 -1.7257 -1.2905
35 1 1.7683 -0.1675 -2.1365
36 1 4.0071 0.1512 -1.0975
37 1 3.9428 -1.3421 -2.0636
38 1 5.9834 -1.1393 -0.3101
39 1 7.8642 -3.0657 -0.1905
40 1 7.9036 -2.1115 1.3117
41 1 7.4432 -4.1620 2.6272
42 1 7.4037 -5.1167 1.1253
43 1 9.7510 -4.4701 0.6535
44 1 9.7897 -3.5155 2.1554
45 1 9.3293 -5.5655 3.4714
46 1 9.2905 -6.5208 1.9699
47 1 11.7933 -4.5518 4.2086
48 1 3.6523 -1.5666 2.2003
49 1 3.9904 0.0063 1.4359
50 1 2.9986 -0.6848 4.7784
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001132212421.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:40:56
Heat of formation + Delta-G solvation = 52.353103 kcal
Electronic energy + Delta-G solvation = -28651.763200 eV
Core-core repulsion = 24715.705513 eV
Total energy + Delta-G solvation = -3936.057687 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.206 amu
Computer time = 14.78 seconds
Orbital eigenvalues (eV)
-43.61599 -39.54794 -37.71895 -36.14119 -34.37310 -33.67308 -32.82208 -32.59765
-30.79279 -29.87191 -29.16391 -26.24708 -25.31816 -24.58240 -23.28940 -22.37493
-22.14098 -21.43740 -20.57185 -19.91003 -19.19403 -18.51574 -16.74037 -16.45688
-16.31983 -16.05551 -15.61963 -15.08857 -14.82126 -14.70091 -14.30723 -13.97934
-13.80582 -13.63854 -13.38276 -13.07546 -12.82056 -12.68205 -12.44151 -12.30285
-11.94342 -11.80482 -11.51457 -11.44220 -11.40147 -11.12728 -11.11708 -10.91077
-10.87780 -10.77472 -10.72319 -10.51517 -10.40465 -10.25952 -9.95724 -9.75004
-9.49659 -9.45670 -9.27220 -8.51257 -8.40994 -6.61326 -5.73615 -3.18213
1.21378 2.23593 2.39480 3.06048 3.42217 3.48696 3.49600 3.55039
4.07134 4.31033 4.53327 4.57056 4.61078 4.85257 4.87228 5.04119
5.16905 5.21903 5.25925 5.33969 5.36855 5.45041 5.52196 5.55324
5.57194 5.63191 5.68091 5.71469 5.82267 5.96479 6.05859 6.09846
6.22191 6.26424 6.30546 6.38486 6.45003 6.47566 6.50960 6.61921
6.74908 6.97479 7.04093 7.12016 7.33167 7.75647 7.85889 7.96112
8.11739 8.50565 8.68645 9.25205 9.89333 10.44421 11.34345
Molecular weight = 335.21amu
Principal moments of inertia in cm(-1)
A = 0.015005 B = 0.002160 C = 0.001950
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1865.613633 B =12958.900407 C =14358.413689
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C 0.165 3.835
3 H 0.024 0.976
4 C -0.126 4.126
5 C -0.116 4.116
6 C 0.116 3.884
7 H 0.080 0.920
8 N -0.723 5.723
9 C 0.506 3.494
10 O -0.535 6.535
11 C -0.139 4.139
12 C -0.104 4.104
13 C -0.114 4.114
14 C -0.051 4.051
15 C -0.002 4.002
16 C -0.049 4.049
17 N -0.266 5.266
18 N -0.088 5.088
19 N -0.392 5.392
20 H 0.447 0.553
21 C 0.168 3.832
22 N -0.584 5.584
23 C -0.252 4.252
24 H 0.070 0.930
25 C 0.005 3.995
26 N -0.901 5.901
27 Si 0.901 3.099
28 H -0.287 1.287
29 H -0.292 1.292
30 H -0.279 1.279
31 H 0.061 0.939
32 H 0.037 0.963
33 H 0.053 0.947
34 H 0.060 0.940
35 H 0.054 0.946
36 H 0.058 0.942
37 H 0.049 0.951
38 H 0.391 0.609
39 H 0.086 0.914
40 H 0.091 0.909
41 H 0.077 0.923
42 H 0.070 0.930
43 H 0.061 0.939
44 H 0.072 0.928
45 H 0.099 0.901
46 H 0.080 0.920
47 H 0.191 0.809
48 H 0.095 0.905
49 H 0.015 0.985
50 H 0.252 0.748
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.269 -5.905 -9.447 17.326
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C 0.058 3.942
3 H 0.042 0.958
4 C -0.166 4.166
5 C -0.154 4.154
6 C 0.011 3.989
7 H 0.098 0.902
8 N -0.373 5.373
9 C 0.292 3.708
10 O -0.411 6.411
11 C -0.180 4.180
12 C -0.142 4.142
13 C -0.153 4.153
14 C -0.091 4.091
15 C -0.136 4.136
16 C -0.206 4.206
17 N -0.134 5.134
18 N -0.068 5.068
19 N -0.112 5.112
20 H 0.292 0.708
21 C 0.041 3.959
22 N -0.307 5.307
23 C -0.381 4.381
24 H 0.088 0.912
25 C -0.194 4.194
26 N -0.545 5.545
27 Si 0.731 3.269
28 H -0.214 1.214
29 H -0.218 1.218
30 H -0.205 1.205
31 H 0.080 0.920
32 H 0.056 0.944
33 H 0.072 0.928
34 H 0.079 0.921
35 H 0.073 0.927
36 H 0.076 0.924
37 H 0.068 0.932
38 H 0.224 0.776
39 H 0.105 0.895
40 H 0.110 0.890
41 H 0.095 0.905
42 H 0.089 0.911
43 H 0.080 0.920
44 H 0.090 0.910
45 H 0.118 0.882
46 H 0.099 0.901
47 H 0.208 0.792
48 H 0.113 0.887
49 H 0.033 0.967
50 H 0.062 0.938
Dipole moment (debyes) X Y Z Total
from point charges 14.336 -6.810 -9.027 18.258
hybrid contribution -1.402 -0.095 0.168 1.415
sum 12.934 -6.904 -8.859 17.130
Atomic orbital electron populations
1.21799 0.95996 1.01368 1.00216 1.20484 0.93060 0.93553 0.87093
0.95806 1.22040 0.94367 1.01286 0.98897 1.21676 0.97358 0.99635
0.96747 1.21961 0.78104 1.00742 0.98128 0.90199 1.46115 1.08507
1.26807 1.55918 1.20552 0.90356 0.81413 0.78496 1.90741 1.63765
1.42157 1.44441 1.21652 0.93392 1.00615 1.02317 1.21326 0.93742
0.97305 1.01874 1.21630 0.96617 0.97052 0.99972 1.20248 0.85339
0.99790 1.03687 1.22439 0.96966 0.99062 0.95122 1.23473 0.88633
1.05406 1.03104 1.75100 1.22431 1.08867 1.06956 1.78290 1.00055
1.17291 1.11152 1.45151 1.06021 1.34503 1.25571 0.70782 1.21078
0.83439 0.96872 0.94478 1.44031 1.02633 1.64830 1.19212 1.19154
0.94776 1.38040 0.86145 0.91201 1.25074 0.97779 0.99488 0.97026
1.69997 1.23439 1.44340 1.16768 0.86317 0.79736 0.80039 0.80831
1.21351 1.21822 1.20468 0.91979 0.94364 0.92821 0.92129 0.92744
0.92353 0.93216 0.77589 0.89548 0.89021 0.90476 0.91094 0.92012
0.90972 0.88218 0.90139 0.79156 0.88661 0.96664 0.93764
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.53 7.95 37.16 0.30 -2.23 16
2 C 0.16 3.33 3.49 -67.60 -0.24 3.09 16
3 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16
4 C -0.13 -2.10 5.38 -26.61 -0.14 -2.25 16
5 C -0.12 -1.82 5.36 -26.69 -0.14 -1.96 16
6 C 0.12 2.19 2.60 -67.81 -0.18 2.01 16
7 H 0.08 1.74 7.57 -51.93 -0.39 1.34 16
8 N -0.72 -10.97 5.08 -53.69 -0.27 -11.24 16
9 C 0.51 7.98 7.80 -10.99 -0.09 7.89 16
10 O -0.53 -11.12 15.64 5.56 0.09 -11.03 16
11 C -0.14 -1.41 5.70 -27.89 -0.16 -1.57 16
12 C -0.10 -0.99 4.50 -26.73 -0.12 -1.11 16
13 C -0.11 -0.74 5.20 -26.73 -0.14 -0.87 16
14 C -0.05 -0.29 5.78 -27.89 -0.16 -0.45 16
15 C 0.00 -0.01 6.56 -82.09 -0.54 -0.55 16
16 C -0.05 -0.44 11.99 -17.74 -0.21 -0.65 16
17 N -0.27 -3.13 12.41 30.23 0.38 -2.76 16
18 N -0.09 -0.94 13.38 60.35 0.81 -0.13 16
19 N -0.39 -2.80 6.98 33.54 0.23 -2.57 16
20 H 0.45 1.56 8.96 -190.40 -1.71 -0.15 16
21 C 0.17 4.00 4.87 -3.71 -0.02 3.98 16
22 N -0.58 -14.35 2.99 -164.78 -0.49 -14.84 16
23 C -0.25 -6.83 8.60 -15.06 -0.13 -6.95 16
24 H 0.07 1.85 6.21 -52.49 -0.33 1.52 16
25 C 0.01 0.14 4.96 -17.43 -0.09 0.06 16
26 N -0.90 -26.39 11.14 55.49 0.62 -25.77 16
27 Si 0.90 22.19 29.58 -169.99 -5.03 17.16 16
28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16
29 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16
30 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16
31 H 0.06 1.25 7.62 -51.93 -0.40 0.85 16
32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16
33 H 0.05 1.01 7.44 -51.93 -0.39 0.63 16
34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16
35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16
36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16
37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
38 H 0.39 4.53 8.60 -40.82 -0.35 4.18 16
39 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16
40 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16
41 H 0.08 0.87 8.10 -51.92 -0.42 0.45 16
42 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16
43 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16
44 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16
45 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16
46 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16
47 H 0.19 1.22 8.06 -52.48 -0.42 0.80 16
48 H 0.10 2.68 6.06 -51.93 -0.31 2.37 16
49 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16
50 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16
LS Contribution 400.14 15.07 6.03 6.03
Total: -1.00 -35.40 400.14 -9.47 -44.87
By element:
Atomic # 1 Polarization: 11.63 SS G_CDS: -9.77 Total: 1.86 kcal
Atomic # 6 Polarization: 0.48 SS G_CDS: -2.05 Total: -1.57 kcal
Atomic # 7 Polarization: -58.58 SS G_CDS: 1.27 Total: -57.31 kcal
Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.03 kcal
Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.16 kcal
Total LS contribution 6.03 Total: 6.03 kcal
Total: -35.40 -9.47 -44.87 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001132212421.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 97.222 kcal
(2) G-P(sol) polarization free energy of solvation -35.404 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.818 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.869 kcal
(6) G-S(sol) free energy of system = (1) + (5) 52.353 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 14.78 seconds