Wall clock time and date at job start Wed Apr 1 2020 00:13:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09001 * 109.45807 * 2 1
4 4 C 1.53036 * 109.44900 * 119.96762 * 2 1 3
5 5 C 1.53632 * 109.24130 * 58.52386 * 4 2 1
6 6 N 1.46927 * 108.54013 * 54.85647 * 5 4 2
7 7 C 1.34777 * 120.62757 * 126.36982 * 6 5 4
8 8 O 1.21288 * 119.99593 * 179.71618 * 7 6 5
9 9 C 1.50697 * 120.00369 * 359.71777 * 7 6 5
10 10 C 1.52997 * 109.47466 * 180.02562 * 9 7 6
11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7
12 12 N 1.46499 * 109.46840 * 180.02562 * 11 10 9
13 13 C 1.35321 * 125.87102 * 124.99920 * 12 11 10
14 14 C 1.35347 * 106.17576 * 179.97438 * 13 12 11
15 15 N 1.33777 * 106.49832 * 0.02562 * 14 13 12
16 16 N 1.28635 * 108.88300 * 359.73058 * 15 14 13
17 17 C 1.46923 * 118.73975 * 306.08904 * 6 5 4
18 18 C 1.53041 * 109.45842 * 240.03034 * 2 1 3
19 19 H 1.08994 * 109.49924 * 181.40584 * 18 2 1
20 20 C 1.53001 * 109.50042 * 61.30879 * 18 2 1
21 21 N 1.46495 * 109.47108 * 175.16372 * 20 18 2
22 22 C 1.36946 * 119.99774 * 180.02562 * 21 20 18
23 23 H 1.07995 * 119.99970 * 359.97438 * 22 21 20
24 24 C 1.38816 * 119.99802 * 179.97438 * 22 21 20
25 25 N 1.31619 * 119.99859 * 359.97438 * 24 22 21
26 26 Si 1.86796 * 119.99618 * 179.97438 * 24 22 21
27 27 H 1.48502 * 109.47287 * 60.00279 * 26 24 22
28 28 H 1.48508 * 109.46757 * 179.97438 * 26 24 22
29 29 H 1.48495 * 109.47303 * 299.99770 * 26 24 22
30 30 H 1.08998 * 109.47124 * 179.97438 * 1 2 3
31 31 H 1.09001 * 109.47332 * 299.96940 * 1 2 3
32 32 H 1.09007 * 109.47126 * 59.96973 * 1 2 3
33 33 H 1.08998 * 109.49507 * 178.59760 * 4 2 1
34 34 H 1.09002 * 109.49891 * 298.69654 * 4 2 1
35 35 H 1.09001 * 109.73670 * 295.11794 * 5 4 2
36 36 H 1.09001 * 109.66257 * 174.54836 * 5 4 2
37 37 H 1.09002 * 109.47120 * 59.99760 * 9 7 6
38 38 H 1.08998 * 109.46862 * 300.00562 * 9 7 6
39 39 H 1.09002 * 109.47153 * 59.99773 * 10 9 7
40 40 H 1.09001 * 109.46832 * 299.99964 * 10 9 7
41 41 H 1.09001 * 109.47194 * 299.99650 * 11 10 9
42 42 H 1.08992 * 109.47399 * 59.99823 * 11 10 9
43 43 H 1.08001 * 126.90925 * 359.97438 * 13 12 11
44 44 H 1.07993 * 126.74907 * 180.02562 * 14 13 12
45 45 H 1.08998 * 109.58421 * 173.64745 * 17 6 5
46 46 H 1.08995 * 109.58927 * 293.93602 * 17 6 5
47 47 H 1.09002 * 109.47143 * 295.16321 * 20 18 2
48 48 H 1.08998 * 109.47046 * 55.16109 * 20 18 2
49 49 H 0.96993 * 120.00438 * 0.02562 * 21 20 18
50 50 H 0.97003 * 119.99750 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8931 1.0278 0.0000
4 6 2.0396 -0.7208 1.2501
5 6 1.4940 -2.1569 1.2642
6 7 1.8619 -2.8089 0.0000
7 6 2.5148 -3.9880 0.0001
8 8 2.8084 -4.5186 -1.0503
9 6 2.8799 -4.6471 1.3052
10 6 3.6090 -5.9628 1.0257
11 6 3.9791 -6.6322 2.3508
12 7 4.6778 -7.8917 2.0832
13 6 5.8969 -8.2385 2.5574
14 6 6.1546 -9.4736 2.0675
15 7 5.0950 -9.8173 1.3269
16 7 4.2354 -8.8609 1.3608
17 6 1.4992 -2.1542 -1.2643
18 6 2.0398 -0.7208 -1.2501
19 1 3.1295 -0.7431 -1.2382
20 6 1.5571 0.0194 -2.4990
21 7 2.1395 -0.6024 -3.6908
22 6 1.8485 -0.1061 -4.9336
23 1 1.1894 0.7433 -5.0350
24 6 2.4008 -0.6950 -6.0628
25 7 3.2044 -1.7299 -5.9390
26 14 2.0033 -0.0184 -7.7580
27 1 2.4419 1.3979 -7.8411
28 1 2.7136 -0.8174 -8.7888
29 1 0.5390 -0.0978 -7.9918
30 1 -0.3633 -1.0276 -0.0005
31 1 -0.3634 0.5134 0.8903
32 1 -0.3634 0.5143 -0.8898
33 1 3.1293 -0.7431 1.2384
34 1 1.6955 -0.1934 2.1398
35 1 0.4086 -2.1374 1.3630
36 1 1.9292 -2.7064 2.0990
37 1 1.9738 -4.8478 1.8769
38 1 3.5309 -3.9855 1.8767
39 1 4.5152 -5.7617 0.4542
40 1 2.9583 -6.6245 0.4541
41 1 4.6297 -5.9707 2.9228
42 1 3.0728 -6.8333 2.9219
43 1 6.5356 -7.6484 3.1979
44 1 7.0414 -10.0652 2.2406
45 1 1.9379 -2.7019 -2.0983
46 1 0.4144 -2.1368 -1.3687
47 1 0.4699 -0.0343 -2.5557
48 1 1.8670 1.0630 -2.4454
49 1 2.7311 -1.3656 -3.5997
50 1 3.5906 -2.1412 -6.7282
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001132884176.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 00:13:49
Heat of formation + Delta-G solvation = 38.028269 kcal
Electronic energy + Delta-G solvation = -29033.898049 eV
Core-core repulsion = 25097.219190 eV
Total energy + Delta-G solvation = -3936.678859 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.206 amu
Computer time = 1.11 seconds
Orbital eigenvalues (eV)
-44.13359 -41.48188 -39.41155 -36.78308 -36.63840 -34.90669 -33.64863 -33.43970
-31.92186 -31.49060 -29.14380 -28.51663 -26.98554 -25.78275 -24.90661 -24.07989
-23.43287 -22.55840 -22.05628 -20.73392 -19.43904 -18.93195 -18.56847 -17.94417
-17.33086 -16.92850 -16.80420 -16.76179 -16.06557 -15.85780 -15.68849 -15.58137
-15.30335 -15.10976 -14.81898 -14.50556 -14.32954 -14.11312 -13.80514 -13.55210
-13.15809 -13.12549 -13.04961 -12.84694 -12.67208 -12.60977 -12.52613 -12.44513
-12.18326 -12.02029 -11.99062 -11.92854 -11.75645 -11.70464 -11.34448 -11.20663
-11.06205 -10.94492 -10.74953 -10.30209 -9.54394 -9.03903 -7.97644 -5.28367
0.71851 1.41975 1.46647 1.53015 1.53484 1.66497 1.66564 2.06414
2.52696 3.35072 3.39419 3.59786 3.70733 3.72989 3.82279 3.87395
3.88011 4.08895 4.12867 4.20046 4.25910 4.31358 4.34826 4.37181
4.38864 4.45985 4.55438 4.57468 4.63624 4.77414 4.79160 4.79902
4.85869 4.93621 5.00731 5.04056 5.10602 5.18896 5.22128 5.26377
5.31657 5.32456 5.42693 5.45674 5.57745 5.62758 5.74860 6.22659
6.50461 7.24731 7.27910 7.57015 8.05210 8.26827 9.25633
Molecular weight = 335.21amu
Principal moments of inertia in cm(-1)
A = 0.010796 B = 0.002515 C = 0.002094
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2592.901685 B =11129.419880 C =13366.076841
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.081 4.081
3 H 0.077 0.923
4 C -0.123 4.123
5 C 0.097 3.903
6 N -0.608 5.608
7 C 0.493 3.507
8 O -0.603 6.603
9 C -0.118 4.118
10 C -0.116 4.116
11 C 0.115 3.885
12 N -0.289 5.289
13 C -0.031 4.031
14 C -0.074 4.074
15 N -0.324 5.324
16 N -0.135 5.135
17 C 0.129 3.871
18 C -0.088 4.088
19 H 0.049 0.951
20 C 0.158 3.842
21 N -0.749 5.749
22 C -0.247 4.247
23 H 0.079 0.921
24 C -0.081 4.081
25 N -0.973 5.973
26 Si 0.978 3.022
27 H -0.273 1.273
28 H -0.297 1.297
29 H -0.275 1.275
30 H 0.055 0.945
31 H 0.082 0.918
32 H 0.042 0.958
33 H 0.063 0.937
34 H 0.113 0.887
35 H 0.087 0.913
36 H 0.126 0.874
37 H 0.138 0.862
38 H 0.141 0.859
39 H 0.049 0.951
40 H 0.048 0.952
41 H 0.158 0.842
42 H 0.126 0.874
43 H 0.242 0.758
44 H 0.215 0.785
45 H 0.040 0.960
46 H 0.067 0.933
47 H 0.028 0.972
48 H 0.023 0.977
49 H 0.369 0.631
50 H 0.250 0.750
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.441 -2.165 32.729 32.804
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.100 4.100
3 H 0.095 0.905
4 C -0.160 4.160
5 C -0.024 4.024
6 N -0.340 5.340
7 C 0.283 3.717
8 O -0.484 6.484
9 C -0.157 4.157
10 C -0.155 4.155
11 C -0.004 4.004
12 N -0.083 5.083
13 C -0.183 4.183
14 C -0.232 4.232
15 N -0.189 5.189
16 N -0.114 5.114
17 C 0.005 3.995
18 C -0.108 4.108
19 H 0.067 0.933
20 C 0.031 3.969
21 N -0.391 5.391
22 C -0.379 4.379
23 H 0.097 0.903
24 C -0.273 4.273
25 N -0.624 5.624
26 Si 0.806 3.194
27 H -0.199 1.199
28 H -0.224 1.224
29 H -0.201 1.201
30 H 0.074 0.926
31 H 0.101 0.899
32 H 0.061 0.939
33 H 0.082 0.918
34 H 0.131 0.869
35 H 0.105 0.895
36 H 0.144 0.856
37 H 0.156 0.844
38 H 0.159 0.841
39 H 0.067 0.933
40 H 0.067 0.933
41 H 0.176 0.824
42 H 0.144 0.856
43 H 0.258 0.742
44 H 0.232 0.768
45 H 0.059 0.941
46 H 0.085 0.915
47 H 0.046 0.954
48 H 0.041 0.959
49 H 0.201 0.799
50 H 0.058 0.942
Dipole moment (debyes) X Y Z Total
from point charges -0.712 -2.800 31.209 31.343
hybrid contribution 1.091 0.209 -1.586 1.937
sum 0.379 -2.591 29.623 29.738
Atomic orbital electron populations
1.21960 0.94223 1.02052 1.02390 1.21087 0.96770 0.99304 0.92874
0.90477 1.22029 1.00933 0.95125 0.97961 1.22339 1.01816 0.93797
0.84454 1.48303 1.56741 1.20963 1.08021 1.21724 0.76629 0.80744
0.92596 1.90791 1.55951 1.64962 1.36696 1.21620 1.04615 0.95933
0.93549 1.21477 1.00816 0.96505 0.96672 1.22539 1.00658 0.79370
0.97841 1.47883 1.14263 1.15087 1.31106 1.24516 0.89310 0.99100
1.05354 1.24307 1.00786 0.97463 1.00652 1.75069 1.02619 1.21180
1.19983 1.78293 1.23160 0.94602 1.15349 1.21279 0.99130 0.92760
0.86303 1.21528 0.99211 0.94262 0.95786 0.93284 1.20893 0.95879
0.94839 0.85266 1.42691 1.57094 1.37263 1.02079 1.19644 1.22552
1.10633 0.85036 0.90267 1.25695 1.00559 0.98950 1.02099 1.69873
1.37302 1.25975 1.29245 0.85143 0.77675 0.77545 0.78995 1.19894
1.22385 1.20144 0.92600 0.89919 0.93873 0.91819 0.86917 0.89524
0.85563 0.84447 0.84082 0.93261 0.93269 0.82429 0.85648 0.74180
0.76845 0.94115 0.91488 0.95433 0.95941 0.79946 0.94157
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.72 8.11 71.98 0.58 -2.14 16
2 C -0.08 -1.66 2.71 -10.77 -0.03 -1.69 16
3 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16
4 C -0.12 -1.52 5.64 30.82 0.17 -1.34 16
5 C 0.10 1.13 5.90 86.51 0.51 1.64 16
6 N -0.61 -14.92 2.97 -818.05 -2.43 -17.35 16
7 C 0.49 13.58 7.70 87.66 0.67 14.26 16
8 O -0.60 -25.74 15.40 -3.05 -0.05 -25.79 16
9 C -0.12 -1.40 4.05 29.85 0.12 -1.28 16
10 C -0.12 -2.01 4.63 30.59 0.14 -1.87 16
11 C 0.12 0.90 6.46 86.38 0.56 1.45 16
12 N -0.29 -4.91 3.44 -347.74 -1.20 -6.10 16
13 C -0.03 -0.37 11.57 83.49 0.97 0.60 16
14 C -0.07 -1.30 12.05 83.73 1.01 -0.29 16
15 N -0.32 -9.09 12.41 -58.26 -0.72 -9.82 16
16 N -0.13 -3.72 12.92 37.02 0.48 -3.24 16
17 C 0.13 4.44 5.04 86.37 0.44 4.87 16
18 C -0.09 -2.85 2.15 -10.71 -0.02 -2.87 16
19 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16
20 C 0.16 6.47 5.19 86.38 0.45 6.92 16
21 N -0.75 -40.84 5.38 -343.45 -1.85 -42.68 16
22 C -0.25 -14.57 9.99 84.03 0.84 -13.73 16
23 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16
24 C -0.08 -4.96 5.50 84.86 0.47 -4.49 16
25 N -0.97 -64.48 13.06 21.65 0.28 -64.19 16
26 Si 0.98 48.56 29.55 68.60 2.03 50.59 16
27 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16
28 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16
29 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16
30 H 0.06 1.04 4.97 -2.39 -0.01 1.03 16
31 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16
32 H 0.04 0.97 6.57 -2.38 -0.02 0.95 16
33 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16
34 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16
35 H 0.09 0.85 6.69 -2.39 -0.02 0.83 16
36 H 0.13 0.37 5.93 -2.39 -0.01 0.36 16
37 H 0.14 0.60 7.93 -2.39 -0.02 0.58 16
38 H 0.14 0.48 7.70 -2.39 -0.02 0.47 16
39 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16
40 H 0.05 1.27 8.08 -2.39 -0.02 1.25 16
41 H 0.16 -0.33 8.07 -2.39 -0.02 -0.35 16
42 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16
43 H 0.24 0.00 8.06 -2.91 -0.02 -0.02 16
44 H 0.21 2.15 8.06 -2.91 -0.02 2.12 16
45 H 0.04 1.91 6.20 -2.39 -0.01 1.90 16
46 H 0.07 2.25 6.70 -2.39 -0.02 2.23 16
47 H 0.03 1.12 6.72 -2.39 -0.02 1.10 16
48 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16
49 H 0.37 22.19 6.89 -92.71 -0.64 21.56 16
50 H 0.25 16.08 8.31 -92.71 -0.77 15.31 16
Total: -1.00 -99.08 392.94 3.73 -95.35
By element:
Atomic # 1 Polarization: 22.90 SS G_CDS: 0.31 Total: 23.20 kcal
Atomic # 6 Polarization: -6.84 SS G_CDS: 6.88 Total: 0.04 kcal
Atomic # 7 Polarization: -137.96 SS G_CDS: -5.43 Total: -143.39 kcal
Atomic # 8 Polarization: -25.74 SS G_CDS: -0.05 Total: -25.79 kcal
Atomic # 14 Polarization: 48.56 SS G_CDS: 2.03 Total: 50.59 kcal
Total: -99.08 3.73 -95.35 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001132884176.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 133.380 kcal
(2) G-P(sol) polarization free energy of solvation -99.085 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.296 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.733 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.352 kcal
(6) G-S(sol) free energy of system = (1) + (5) 38.028 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.11 seconds