Wall clock time and date at job start Wed Apr 1 2020 00:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.44554 * 2 1 4 4 C 1.53035 * 109.46137 * 240.02874 * 2 1 3 5 5 C 1.53195 * 109.31200 * 178.61273 * 4 2 1 6 6 N 1.46931 * 108.77110 * 54.63842 * 5 4 2 7 7 C 1.34776 * 120.62930 * 126.37290 * 6 5 4 8 8 O 1.21275 * 120.00127 * 180.02562 * 7 6 5 9 9 C 1.50700 * 119.99953 * 0.02562 * 7 6 5 10 10 C 1.53004 * 109.47371 * 180.02562 * 9 7 6 11 11 C 1.52993 * 109.47287 * 180.02562 * 10 9 7 12 12 N 1.46511 * 109.47085 * 180.02562 * 11 10 9 13 13 C 1.35309 * 125.87011 * 124.99733 * 12 11 10 14 14 C 1.35346 * 106.17518 * 179.97438 * 13 12 11 15 15 N 1.33769 * 106.49638 * 0.02562 * 14 13 12 16 16 N 1.28632 * 108.88871 * 359.73444 * 15 14 13 17 17 C 1.46919 * 118.74092 * 306.38691 * 6 5 4 18 18 C 1.53045 * 109.45681 * 119.96178 * 2 1 3 19 19 H 1.09000 * 109.52739 * 61.42112 * 18 2 1 20 20 C 1.53000 * 109.49689 * 301.33571 * 18 2 1 21 21 N 1.46499 * 109.46840 * 175.16149 * 20 18 2 22 22 C 1.36936 * 120.00002 * 180.02562 * 21 20 18 23 23 H 1.08004 * 120.00140 * 0.02562 * 22 21 20 24 24 C 1.38811 * 120.00367 * 180.02562 * 22 21 20 25 25 N 1.31619 * 119.99972 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00444 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47261 * 59.99582 * 26 24 22 28 28 H 1.48502 * 109.47375 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.46897 * 300.00142 * 26 24 22 30 30 H 1.09002 * 109.47420 * 300.03954 * 1 2 3 31 31 H 1.09003 * 109.46607 * 60.03869 * 1 2 3 32 32 H 1.08998 * 109.47276 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.49551 * 58.66578 * 4 2 1 34 34 H 1.08993 * 109.49844 * 298.56651 * 4 2 1 35 35 H 1.08998 * 109.59148 * 294.85230 * 5 4 2 36 36 H 1.08995 * 109.70304 * 174.49327 * 5 4 2 37 37 H 1.09003 * 109.47752 * 300.00572 * 9 7 6 38 38 H 1.09004 * 109.46783 * 60.00627 * 9 7 6 39 39 H 1.09003 * 109.46994 * 300.00846 * 10 9 7 40 40 H 1.09009 * 109.46806 * 59.99998 * 10 9 7 41 41 H 1.08998 * 109.47223 * 299.99987 * 11 10 9 42 42 H 1.08996 * 109.47301 * 60.00268 * 11 10 9 43 43 H 1.08004 * 126.91272 * 359.97438 * 13 12 11 44 44 H 1.08002 * 126.75052 * 180.02562 * 14 13 12 45 45 H 1.08999 * 109.58985 * 293.82483 * 17 6 5 46 46 H 1.08992 * 109.58857 * 173.39578 * 17 6 5 47 47 H 1.09002 * 109.47398 * 295.16475 * 20 18 2 48 48 H 1.09001 * 109.47194 * 55.16655 * 20 18 2 49 49 H 0.97000 * 120.00420 * 0.02562 * 21 20 18 50 50 H 0.96996 * 120.00586 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5714 -0.6886 -1.2641 6 7 4.0678 -1.2488 0.0003 7 6 4.9615 -2.2577 0.0003 8 8 5.3632 -2.7118 1.0506 9 6 5.4614 -2.8216 -1.3047 10 6 6.4582 -3.9481 -1.0251 11 6 6.9663 -4.5201 -2.3500 12 7 7.9203 -5.5993 -2.0823 13 6 7.8405 -6.8639 -2.5567 14 6 8.9186 -7.5192 -2.0666 15 7 9.5960 -6.6352 -1.3256 16 7 8.9813 -5.5057 -1.3594 17 6 3.5714 -0.6885 1.2644 18 6 2.0398 -0.7207 1.2502 19 1 1.6978 -1.7556 1.2391 20 6 1.5027 -0.0187 2.4990 21 7 1.8948 -0.7748 3.6909 22 6 1.5239 -0.3350 4.9336 23 1 0.9418 0.5692 5.0349 24 6 1.8959 -1.0511 6.0630 25 7 2.6048 -2.1532 5.9396 26 14 1.3892 -0.4515 7.7581 27 1 -0.0924 -0.3952 7.8409 28 1 1.9070 -1.3865 8.7891 29 1 1.9498 0.9036 7.9917 30 1 -0.3634 0.5144 0.8896 31 1 -0.3633 0.5133 -0.8904 32 1 -0.3634 -1.0276 0.0005 33 1 1.6573 -0.2208 -2.1398 34 1 1.6979 -1.7556 -1.2381 35 1 3.9144 0.3409 -1.3672 36 1 3.9438 -1.2831 -2.0983 37 1 4.6208 -3.2144 -1.8767 38 1 5.9533 -2.0342 -1.8759 39 1 7.2989 -3.5557 -0.4529 40 1 5.9660 -4.7354 -0.4540 41 1 6.1258 -4.9125 -2.9225 42 1 7.4586 -3.7328 -2.9207 43 1 7.0713 -7.2690 -3.1976 44 1 9.1805 -8.5526 -2.2397 45 1 3.9143 0.3410 1.3675 46 1 3.9416 -1.2844 2.0986 47 1 1.9155 0.9886 2.5556 48 1 0.4154 0.0367 2.4454 49 1 2.4173 -1.5870 3.6000 50 1 2.8644 -2.6538 6.7287 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132884177.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:01 Heat of formation + Delta-G solvation = 64.125475 kcal Electronic energy + Delta-G solvation = -28896.617478 eV Core-core repulsion = 24961.070279 eV Total energy + Delta-G solvation = -3935.547199 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -43.45274 -40.32224 -38.16888 -36.10281 -35.00875 -33.71811 -32.92276 -31.85184 -31.25773 -29.87732 -28.75511 -27.57967 -25.56023 -23.92308 -23.25003 -23.01024 -22.62439 -21.39196 -21.24894 -19.90332 -18.99923 -17.94548 -17.16644 -16.93028 -16.55965 -16.02962 -15.85058 -15.24530 -14.86126 -14.82581 -14.51848 -14.38613 -13.97450 -13.90230 -13.54047 -13.42450 -13.09790 -12.91063 -12.70529 -12.66503 -12.33080 -12.21407 -11.87695 -11.82499 -11.77876 -11.51442 -11.31640 -11.08904 -11.00824 -10.88268 -10.80298 -10.61350 -10.36996 -10.31344 -10.18265 -9.98081 -9.67519 -9.63179 -9.55341 -8.82823 -8.52241 -6.86627 -5.69514 -2.99483 1.35691 2.04009 2.37726 2.67708 3.01098 3.47568 3.51530 3.53508 3.97314 4.17366 4.27138 4.44805 4.56258 4.64685 4.69574 4.72330 4.76624 4.79653 4.85926 4.89292 4.97142 5.08426 5.12080 5.23918 5.33453 5.38938 5.60019 5.61794 5.63306 5.65117 5.68921 5.77571 5.85803 5.86851 5.92912 5.95230 5.99866 6.16321 6.21889 6.29399 6.30418 6.42467 6.56195 6.62419 6.80281 6.88639 7.47074 7.73737 8.25579 8.29479 8.48097 9.58898 10.16929 10.50844 11.52664 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010646 B = 0.002495 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.427211 B =11219.846525 C =13450.807546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 H 0.071 0.929 4 C -0.129 4.129 5 C 0.107 3.893 6 N -0.612 5.612 7 C 0.508 3.492 8 O -0.526 6.526 9 C -0.135 4.135 10 C -0.121 4.121 11 C 0.115 3.885 12 N -0.289 5.289 13 C -0.053 4.053 14 C -0.054 4.054 15 N -0.274 5.274 16 N -0.078 5.078 17 C 0.119 3.881 18 C -0.101 4.101 19 H 0.073 0.927 20 C 0.158 3.842 21 N -0.733 5.733 22 C -0.243 4.243 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.930 5.930 26 Si 0.906 3.094 27 H -0.287 1.287 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.190 0.810 44 H 0.189 0.811 45 H 0.065 0.935 46 H 0.104 0.896 47 H 0.018 0.982 48 H 0.027 0.973 49 H 0.385 0.615 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.304 -2.672 -27.798 28.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.089 0.911 4 C -0.167 4.167 5 C -0.017 4.017 6 N -0.346 5.346 7 C 0.295 3.705 8 O -0.402 6.402 9 C -0.175 4.175 10 C -0.159 4.159 11 C -0.006 4.006 12 N -0.083 5.083 13 C -0.204 4.204 14 C -0.211 4.211 15 N -0.140 5.140 16 N -0.058 5.058 17 C -0.002 4.002 18 C -0.121 4.121 19 H 0.091 0.909 20 C 0.030 3.970 21 N -0.378 5.378 22 C -0.374 4.374 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.578 5.578 26 Si 0.737 3.263 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.125 0.875 42 H 0.119 0.881 43 H 0.207 0.793 44 H 0.206 0.794 45 H 0.083 0.917 46 H 0.122 0.878 47 H 0.036 0.964 48 H 0.044 0.956 49 H 0.219 0.781 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.325 -1.888 -26.210 26.631 hybrid contribution -1.060 -0.613 0.114 1.230 sum 3.264 -2.501 -26.096 26.418 Atomic orbital electron populations 1.21883 0.94956 1.01948 1.01730 1.21091 0.95981 0.99375 0.93933 0.91079 1.21984 0.94618 1.01599 0.98514 1.21741 0.94796 0.99257 0.85871 1.48194 1.43224 1.35436 1.07741 1.20440 0.79245 0.79637 0.91137 1.90810 1.56945 1.59007 1.33389 1.21567 1.00055 0.99047 0.96875 1.21635 1.00402 0.98605 0.95280 1.22203 0.90585 0.88069 0.99714 1.47539 1.18343 1.10218 1.32182 1.23709 1.04240 0.85672 1.06765 1.23649 0.94773 1.01824 1.00901 1.75153 1.24218 0.96518 1.18080 1.78363 0.95909 1.19007 1.12570 1.21732 0.93638 0.99105 0.85742 1.21712 0.94538 1.00674 0.95150 0.90858 1.20721 0.96793 0.94048 0.85391 1.42407 1.65261 1.29297 1.00787 1.19143 1.27990 1.06490 0.83792 0.91320 1.24759 1.00777 0.97528 0.97819 1.69659 1.42130 1.17305 1.28666 0.86287 0.77941 0.77673 0.84369 1.21346 1.21696 1.21289 0.91596 0.93243 0.92802 0.90881 0.91504 0.91351 0.90126 0.88637 0.88532 0.88942 0.89944 0.87502 0.88083 0.79307 0.79415 0.91693 0.87815 0.96449 0.95569 0.78139 0.93411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.81 37.16 0.33 -1.31 16 2 C -0.08 -0.97 2.23 -90.58 -0.20 -1.17 16 3 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.13 -1.10 5.36 -26.61 -0.14 -1.25 16 5 C 0.11 0.87 6.34 -3.71 -0.02 0.85 16 6 N -0.61 -7.79 2.97 -172.77 -0.51 -8.30 16 7 C 0.51 6.95 7.70 -10.99 -0.08 6.86 16 8 O -0.53 -10.20 15.39 5.56 0.09 -10.11 16 9 C -0.13 -1.02 4.05 -27.88 -0.11 -1.13 16 10 C -0.12 -1.08 4.63 -26.73 -0.12 -1.20 16 11 C 0.12 0.65 6.46 -4.04 -0.03 0.62 16 12 N -0.29 -2.67 3.44 -61.26 -0.21 -2.88 16 13 C -0.05 -0.38 11.57 -17.05 -0.20 -0.58 16 14 C -0.05 -0.50 12.05 -17.74 -0.21 -0.71 16 15 N -0.27 -3.68 12.41 30.23 0.38 -3.30 16 16 N -0.08 -1.04 12.92 60.35 0.78 -0.26 16 17 C 0.12 1.95 5.52 -3.71 -0.02 1.93 16 18 C -0.10 -1.59 1.92 -90.49 -0.17 -1.76 16 19 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 20 C 0.16 3.13 5.41 -4.04 -0.02 3.11 16 21 N -0.73 -18.90 5.38 -59.91 -0.32 -19.22 16 22 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 23 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 24 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 25 N -0.93 -29.22 13.06 55.49 0.72 -28.50 16 26 Si 0.91 22.98 29.55 -169.99 -5.02 17.95 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 28 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 29 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 30 H 0.07 0.82 6.30 -51.93 -0.33 0.49 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.41 5.93 -51.93 -0.31 0.10 16 37 H 0.10 0.47 7.69 -51.93 -0.40 0.07 16 38 H 0.10 0.48 7.94 -51.93 -0.41 0.07 16 39 H 0.09 1.09 8.08 -51.93 -0.42 0.67 16 40 H 0.08 0.92 8.10 -51.92 -0.42 0.50 16 41 H 0.11 0.24 8.07 -51.93 -0.42 -0.18 16 42 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.19 0.53 8.06 -52.48 -0.42 0.11 16 44 H 0.19 1.07 8.06 -52.49 -0.42 0.64 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.10 2.18 6.20 -51.93 -0.32 1.86 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.03 0.52 6.15 -51.93 -0.32 0.20 16 49 H 0.38 10.67 6.89 -40.82 -0.28 10.39 16 50 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 LS Contribution 399.01 15.07 6.01 6.01 Total: -1.00 -38.60 399.01 -7.60 -46.20 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -8.25 Total: 5.70 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -1.26 Total: -3.30 kcal Atomic # 7 Polarization: -63.29 SS G_CDS: 0.83 Total: -62.46 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -38.60 -7.60 -46.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132884177.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.325 kcal (2) G-P(sol) polarization free energy of solvation -38.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds